# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_1 - 325 DUF87 PF01935.12 229 1.1e-06 15.0 0.1 1 1 2.2e-06 2.2e-06 14.0 0.1 28 48 162 182 154 190 0.84 # 3 # 977 # -1 # ID=1_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_1 - 325 Septin PF00735.13 281 7.2e-07 14.8 0.0 1 1 1.1e-06 1.1e-06 14.1 0.0 6 29 159 182 155 206 0.80 # 3 # 977 # -1 # ID=1_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_1 - 325 AAA_22 PF13401.1 131 1.9e-07 17.8 0.0 1 1 3.8e-07 3.8e-07 16.8 0.0 4 41 157 205 153 253 0.70 # 3 # 977 # -1 # ID=1_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_1 - 325 ATP_bind_1 PF03029.12 238 2.2e-06 13.7 0.0 1 1 3.6e-06 3.6e-06 13.0 0.0 1 23 162 184 162 190 0.87 # 3 # 977 # -1 # ID=1_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_1 - 325 PRK PF00485.13 194 5.9e-06 12.3 0.0 1 1 1.1e-05 1.1e-05 11.4 0.0 2 24 160 182 159 218 0.83 # 3 # 977 # -1 # ID=1_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_1 - 325 AAA_17 PF13207.1 121 9e-08 19.5 0.1 1 1 2.2e-07 2.2e-07 18.2 0.1 2 49 160 204 159 300 0.82 # 3 # 977 # -1 # ID=1_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_1 - 325 MobB PF03205.9 140 5.8e-07 15.7 0.6 1 2 2.2e-06 2.2e-06 13.9 0.0 3 27 160 184 158 196 0.81 # 3 # 977 # -1 # ID=1_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_1 - 325 MobB PF03205.9 140 5.8e-07 15.7 0.6 2 2 0.073 0.073 -0.8 0.1 20 44 293 317 291 318 0.80 # 3 # 977 # -1 # ID=1_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_1 - 325 T2SE PF00437.15 272 3.1e-65 206.1 0.0 1 1 3.5e-65 3.5e-65 205.9 0.0 5 269 10 309 6 312 0.94 # 3 # 977 # -1 # ID=1_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_1 - 325 Zeta_toxin PF06414.7 201 1.2e-06 14.1 0.0 1 1 2e-06 2e-06 13.4 0.0 17 49 158 191 143 215 0.85 # 3 # 977 # -1 # ID=1_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_1 - 325 Arch_ATPase PF01637.13 234 2.6e-06 13.6 0.0 1 1 4e-06 4e-06 13.0 0.0 23 81 160 222 148 271 0.83 # 3 # 977 # -1 # ID=1_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_1 - 325 AAA_16 PF13191.1 185 4.6e-07 16.4 0.0 1 1 6.2e-07 6.2e-07 15.9 0.0 24 81 157 231 141 302 0.76 # 3 # 977 # -1 # ID=1_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_1 - 325 AAA_23 PF13476.1 202 3.1e-05 10.7 6.2 1 2 0.084 0.084 -0.5 0.3 113 113 114 114 9 159 0.52 # 3 # 977 # -1 # ID=1_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_1 - 325 AAA_23 PF13476.1 202 3.1e-05 10.7 6.2 2 2 8.5e-06 8.5e-06 12.6 1.8 22 37 160 175 148 181 0.88 # 3 # 977 # -1 # ID=1_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_1 - 325 AAA_18 PF13238.1 129 3e-06 14.0 1.4 1 1 4.8e-06 4.8e-06 13.4 0.0 1 18 160 177 160 225 0.76 # 3 # 977 # -1 # ID=1_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_1 - 325 AAA_14 PF13173.1 128 4.7e-07 16.2 0.1 1 1 2.2e-06 2.2e-06 14.1 0.0 2 54 157 208 156 252 0.75 # 3 # 977 # -1 # ID=1_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_1 - 325 GvpD PF07088.6 484 4.6e-06 11.4 0.0 1 1 6e-06 6e-06 11.1 0.0 8 42 155 189 147 255 0.83 # 3 # 977 # -1 # ID=1_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_1 - 325 AAA_29 PF13555.1 62 4.5e-07 15.9 0.0 1 1 1.1e-06 1.1e-06 14.7 0.0 22 40 156 174 139 181 0.85 # 3 # 977 # -1 # ID=1_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_1 - 325 Sigma54_activat PF00158.21 168 9.7e-07 14.8 0.0 1 1 2.1e-06 2.1e-06 13.7 0.0 11 43 146 178 139 195 0.84 # 3 # 977 # -1 # ID=1_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_1 - 325 NTPase_1 PF03266.10 168 7e-06 12.2 0.1 1 1 1.3e-05 1.3e-05 11.4 0.1 1 23 159 181 159 189 0.88 # 3 # 977 # -1 # ID=1_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_1 - 325 FtsK_SpoIIIE PF01580.13 205 1.6e-09 23.9 0.0 1 1 2.6e-09 2.6e-09 23.2 0.0 39 59 154 178 129 184 0.81 # 3 # 977 # -1 # ID=1_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_1 - 325 ABC_tran PF00005.22 137 3.3e-09 23.6 0.0 1 1 6.7e-09 6.7e-09 22.6 0.0 4 50 150 197 148 223 0.84 # 3 # 977 # -1 # ID=1_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_1 - 325 AAA_10 PF12846.2 304 5.7e-08 18.8 0.0 1 1 6.8e-08 6.8e-08 18.6 0.0 2 37 158 193 157 317 0.80 # 3 # 977 # -1 # ID=1_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_1 - 325 ResIII PF04851.10 184 7.5e-07 15.5 0.0 1 1 1.4e-06 1.4e-06 14.6 0.0 3 64 142 198 137 234 0.70 # 3 # 977 # -1 # ID=1_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_1 - 325 DEAD PF00270.24 169 9.1e-08 18.1 0.0 1 1 1.7e-07 1.7e-07 17.3 0.0 3 69 146 209 144 240 0.69 # 3 # 977 # -1 # ID=1_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_1 - 325 TrwB_AAD_bind PF10412.4 386 1.9e-06 13.0 0.0 1 1 2.8e-06 2.8e-06 12.4 0.0 16 42 158 184 150 214 0.85 # 3 # 977 # -1 # ID=1_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_1 - 325 RNA_helicase PF00910.17 107 2e-06 14.5 0.0 1 1 5.7e-06 5.7e-06 13.0 0.0 1 23 160 182 160 221 0.79 # 3 # 977 # -1 # ID=1_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_1 - 325 UPF0079 PF02367.12 123 2.8e-07 16.7 0.0 1 1 5e-07 5e-07 15.8 0.0 8 42 150 184 144 203 0.85 # 3 # 977 # -1 # ID=1_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_1 - 325 AAA_24 PF13479.1 213 2.6e-06 13.5 0.0 1 1 4.8e-06 4.8e-06 12.6 0.0 5 33 159 185 156 214 0.84 # 3 # 977 # -1 # ID=1_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_1 - 325 NACHT PF05729.7 166 3.3e-07 16.5 0.0 1 1 5.8e-07 5.8e-07 15.7 0.0 3 22 160 179 158 185 0.89 # 3 # 977 # -1 # ID=1_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_1 - 325 AAA_25 PF13481.1 194 2.5e-06 13.4 0.0 1 1 3.8e-06 3.8e-06 12.8 0.0 26 56 151 180 125 197 0.76 # 3 # 977 # -1 # ID=1_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/8aa35ecd-7729-44e5-a03f-2d80d5b00a52 # Target file: checkm_output/bins/pAY190287.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pAY190287.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/8aa35ecd-7729-44e5-a03f-2d80d5b00a52 checkm_output/bins/pAY190287.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:36:07 2020 # [ok]