#                                                                            --- full sequence --- -------------- this domain -------------   hmm coord   ali coord   env coord
# target name        accession   tlen query name           accession   qlen   E-value  score  bias   #  of  c-Evalue  i-Evalue  score  bias  from    to  from    to  from    to  acc description of target
#------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- ---------------------
1_3                  -            623 AAA_17               PF13207.1    121     8e-05   12.8   0.0   1   1   3.7e-05    0.0003   11.0   0.0     3    21   327   345   325   395 0.88 # 463 # 2331 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521
1_3                  -            623 KaiC                 PF06745.8    227   6.3e-08   21.3   0.0   1   2   4.4e-07   3.5e-06   15.6   0.1    13    37   317   341   305   353 0.92 # 463 # 2331 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521
1_3                  -            623 KaiC                 PF06745.8    227   6.3e-08   21.3   0.0   2   2    0.0024     0.019    3.3   0.0    96   144   388   446   366   475 0.72 # 463 # 2331 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521
1_3                  -            623 AAA_29               PF13555.1     62   3.2e-05   12.9   0.1   1   1   8.5e-06   6.8e-05   11.8   0.1     9    39   312   339   303   348 0.75 # 463 # 2331 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521
1_3                  -            623 AAA_19               PF13245.1     76   7.6e-06   15.1   0.1   1   1   2.9e-06   2.4e-05   13.5   0.1    12    36   325   354   320   372 0.77 # 463 # 2331 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521
1_3                  -            623 NACHT                PF05729.7    166   1.7e-06   17.1   0.0   1   1   3.7e-07   2.9e-06   16.3   0.0     2    32   325   355   324   380 0.85 # 463 # 2331 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521
1_3                  -            623 AAA_25               PF13481.1    194   6.4e-28   86.8   0.1   1   1   1.6e-28   1.3e-27   85.8   0.1    16   193   302   466   289   467 0.89 # 463 # 2331 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521
#
# Program:         hmmsearch
# Version:         3.1b2 (February 2015)
# Pipeline mode:   SEARCH
# Query file:      /tmp/ad7c6574-44b3-413a-8183-5f577eb8adb1
# Target file:     checkm_output/bins/pAY172685.1.assembled/genes.faa
# Option settings: hmmsearch --domtblout checkm_output/bins/pAY172685.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/ad7c6574-44b3-413a-8183-5f577eb8adb1 checkm_output/bins/pAY172685.1.assembled/genes.faa 
# Current dir:     /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2
# Date:            Tue Jul  7 16:36:07 2020
# [ok]