# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_3 - 1369 Thymidylate_kin PF02223.12 186 5.3e-05 12.3 0.0 1 1 1.1e-05 0.00011 11.2 0.0 1 33 486 518 486 527 0.83 # 2318 # 6424 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.687 1_4 - 200 MipZ PF09140.6 261 3.9e-11 32.1 2.0 1 1 5.1e-11 5.1e-10 28.4 2.0 2 137 2 118 1 151 0.73 # 6498 # 7097 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.640 1_4 - 200 YhjQ PF06564.7 244 5.2e-06 15.6 0.3 1 2 1.5e-06 1.5e-05 14.1 0.1 4 41 3 40 1 55 0.91 # 6498 # 7097 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.640 1_4 - 200 YhjQ PF06564.7 244 5.2e-06 15.6 0.3 2 2 0.059 0.59 -1.0 0.0 119 162 82 121 60 127 0.68 # 6498 # 7097 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.640 1_3 - 1369 UvrD_C_2 PF13538.1 104 3.9e-07 19.9 0.1 1 1 1.5e-07 1.5e-06 18.0 0.1 3 99 749 842 747 846 0.84 # 2318 # 6424 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.687 1_3 - 1369 AAA_22 PF13401.1 131 1.1e-08 24.9 0.2 1 1 1e-08 5.2e-08 22.8 0.0 6 127 483 622 478 625 0.78 # 2318 # 6424 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.687 1_4 - 200 AAA_22 PF13401.1 131 1.1e-05 15.2 0.0 1 2 2.3e-05 0.00011 12.0 0.0 14 94 11 87 3 88 0.81 # 6498 # 7097 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.640 1_4 - 200 AAA_22 PF13401.1 131 1.1e-05 15.2 0.0 2 2 0.051 0.25 1.2 0.0 40 69 101 141 89 166 0.71 # 6498 # 7097 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.640 1_4 - 200 DUF1611 PF07755.6 301 7.2e-07 17.7 0.1 1 2 8.2e-07 8.2e-06 14.2 0.1 124 154 12 42 10 52 0.93 # 6498 # 7097 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.640 1_4 - 200 DUF1611 PF07755.6 301 7.2e-07 17.7 0.1 2 2 0.007 0.07 1.3 0.0 65 99 136 171 82 182 0.66 # 6498 # 7097 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.640 1_3 - 1369 AAA_17 PF13207.1 121 0.0056 7.2 9.8 1 2 0.0039 0.039 4.5 0.0 3 21 485 503 483 514 0.87 # 2318 # 6424 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.687 1_3 - 1369 AAA_17 PF13207.1 121 0.0056 7.2 9.8 2 2 0.0097 0.097 3.2 0.0 9 60 530 577 524 621 0.74 # 2318 # 6424 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.687 1_4 - 200 ArsA_ATPase PF02374.10 305 2e-09 26.4 1.1 1 2 1.1e-09 1.1e-08 24.0 1.4 9 40 9 40 2 45 0.92 # 6498 # 7097 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.640 1_4 - 200 ArsA_ATPase PF02374.10 305 2e-09 26.4 1.1 2 2 0.037 0.37 -0.7 0.0 128 139 82 93 65 99 0.80 # 6498 # 7097 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.640 1_3 - 1369 PhoH PF02562.11 205 6.5e-09 24.9 0.5 1 2 4.6e-08 4.6e-07 18.9 0.1 6 79 467 543 464 546 0.87 # 2318 # 6424 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.687 1_3 - 1369 PhoH PF02562.11 205 6.5e-09 24.9 0.5 2 2 0.0019 0.019 3.8 0.1 120 172 583 634 579 655 0.74 # 2318 # 6424 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.687 1_3 - 1369 T2SE PF00437.15 272 6.2e-06 14.9 0.0 1 1 1.6e-06 1.6e-05 13.5 0.0 92 162 444 515 437 529 0.89 # 2318 # 6424 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.687 1_4 - 200 Methyltransf_24 PF13578.1 106 2.3e-07 21.4 0.0 1 2 3e-07 3e-06 17.8 0.0 7 90 14 101 10 111 0.72 # 6498 # 7097 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.640 1_4 - 200 Methyltransf_24 PF13578.1 106 2.3e-07 21.4 0.0 2 2 0.055 0.55 0.9 0.0 76 97 175 196 170 197 0.90 # 6498 # 7097 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.640 1_4 - 200 VirC1 PF07015.6 231 2.8e-09 26.0 0.0 1 1 5.5e-10 5.5e-09 25.0 0.0 4 127 3 123 1 139 0.89 # 6498 # 7097 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.640 1_4 - 200 Fer4_NifH PF00142.13 273 9.3e-05 11.3 0.0 1 1 1.6e-05 0.00016 10.5 0.0 7 43 8 44 3 53 0.89 # 6498 # 7097 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.640 1_3 - 1369 AAA_16 PF13191.1 185 0.0001 12.0 0.0 1 2 1e-05 0.0001 12.0 0.0 25 68 482 529 455 623 0.76 # 2318 # 6424 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.687 1_3 - 1369 AAA_16 PF13191.1 185 0.0001 12.0 0.0 2 2 0.081 0.81 -0.7 0.2 73 131 1256 1306 1233 1329 0.68 # 2318 # 6424 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.687 1_4 - 200 CbiA PF01656.18 195 1.1e-23 73.3 0.1 1 1 1.5e-24 1.5e-23 72.8 0.1 2 190 4 169 3 174 0.73 # 6498 # 7097 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.640 1_4 - 200 FAD_binding_2 PF00890.19 417 7e-05 11.4 0.4 1 1 1.3e-05 0.00013 10.5 0.1 12 44 19 50 12 56 0.90 # 6498 # 7097 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.640 1_4 - 200 AAA_31 PF13614.1 157 9.5e-10 28.3 0.1 1 2 5.6e-08 5.6e-07 19.3 0.0 2 42 2 42 1 52 0.91 # 6498 # 7097 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.640 1_4 - 200 AAA_31 PF13614.1 157 9.5e-10 28.3 0.1 2 2 0.00034 0.0034 7.0 0.0 119 156 82 117 69 118 0.88 # 6498 # 7097 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.640 1_3 - 1369 AAA_30 PF13604.1 196 1.1e-64 207.2 0.3 1 2 1.1e-65 1.1e-64 207.2 0.3 1 195 465 687 465 688 0.98 # 2318 # 6424 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.687 1_3 - 1369 AAA_30 PF13604.1 196 1.1e-64 207.2 0.3 2 2 0.023 0.23 0.6 0.0 55 88 988 1020 979 1031 0.81 # 2318 # 6424 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.687 1_3 - 1369 AAA_19 PF13245.1 76 7.3e-12 34.7 2.7 1 2 1.7e-11 1.7e-10 30.3 0.7 1 62 472 529 472 540 0.81 # 2318 # 6424 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.687 1_3 - 1369 AAA_19 PF13245.1 76 7.3e-12 34.7 2.7 2 2 0.012 0.12 1.9 0.0 28 63 693 729 690 748 0.71 # 2318 # 6424 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.687 1_3 - 1369 Viral_helicase1 PF01443.13 234 1.4e-07 20.8 0.1 1 3 0.00014 0.0014 7.7 0.1 2 20 485 503 484 537 0.75 # 2318 # 6424 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.687 1_3 - 1369 Viral_helicase1 PF01443.13 234 1.4e-07 20.8 0.1 2 3 0.00044 0.0044 6.2 0.0 63 107 583 629 562 720 0.80 # 2318 # 6424 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.687 1_3 - 1369 Viral_helicase1 PF01443.13 234 1.4e-07 20.8 0.1 3 3 0.0043 0.043 2.9 0.0 179 228 802 842 776 848 0.79 # 2318 # 6424 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.687 1_3 - 1369 TrwB_AAD_bind PF10412.4 386 2.3e-05 12.7 0.0 1 1 4.3e-06 4.3e-05 11.8 0.0 19 49 485 515 483 521 0.92 # 2318 # 6424 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.687 1_3 - 1369 AAA_11 PF13086.1 236 9.3e-09 24.8 0.6 1 2 1.5e-05 0.00015 11.0 0.0 2 66 466 522 465 543 0.91 # 2318 # 6424 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.687 1_3 - 1369 AAA_11 PF13086.1 236 9.3e-09 24.8 0.6 2 2 1.5e-05 0.00015 11.0 0.1 195 232 585 625 578 626 0.87 # 2318 # 6424 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.687 1_3 - 1369 PIF1 PF05970.9 364 0.00011 10.8 0.0 1 2 3.8e-05 0.00038 9.0 0.0 6 57 470 516 465 528 0.71 # 2318 # 6424 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.687 1_3 - 1369 PIF1 PF05970.9 364 0.00011 10.8 0.0 2 2 0.068 0.68 -1.7 0.0 99 118 579 598 569 621 0.82 # 2318 # 6424 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.687 1_3 - 1369 UvrD-helicase PF00580.16 315 0.00039 9.3 1.7 1 2 8.1e-05 0.00081 8.3 0.0 5 58 470 522 466 529 0.73 # 2318 # 6424 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.687 1_3 - 1369 UvrD-helicase PF00580.16 315 0.00039 9.3 1.7 2 2 0.077 0.77 -1.5 0.0 37 68 695 732 690 769 0.74 # 2318 # 6424 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.687 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/888a66fb-496d-4a9f-bae1-64e3c830bed3 # Target file: checkm_output/bins/pAY112722.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pAY112722.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/888a66fb-496d-4a9f-bae1-64e3c830bed3 checkm_output/bins/pAY112722.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:36:05 2020 # [ok]