# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_1 - 223 MipZ PF09140.6 261 2.3e-17 50.8 0.1 1 1 1.3e-16 3.8e-16 46.8 0.1 2 140 3 125 2 148 0.79 # 79 # 747 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.253 1_1 - 223 YhjQ PF06564.7 244 2e-09 25.1 0.0 1 2 4.2e-09 1.3e-08 22.4 0.0 1 49 1 49 1 59 0.84 # 79 # 747 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.253 1_1 - 223 YhjQ PF06564.7 244 2e-09 25.1 0.0 2 2 0.022 0.066 0.4 0.0 103 145 68 111 53 123 0.73 # 79 # 747 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.253 1_1 - 223 SRP54 PF00448.17 196 2.3e-09 24.9 0.0 1 1 1.6e-09 4.9e-09 23.8 0.0 11 133 12 135 10 152 0.73 # 79 # 747 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.253 1_1 - 223 ArsA_ATPase PF02374.10 305 1.4e-10 28.6 0.0 1 1 8.7e-11 2.6e-10 27.7 0.0 8 46 9 47 1 91 0.88 # 79 # 747 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.253 1_1 - 223 VirC1 PF07015.6 231 1.2e-12 35.3 0.0 1 1 4.7e-13 1.4e-12 35.1 0.0 1 149 1 148 1 199 0.86 # 79 # 747 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.253 1_1 - 223 Fer4_NifH PF00142.13 273 6.5e-08 19.9 0.0 1 1 4.9e-08 1.5e-07 18.7 0.0 7 40 9 42 3 58 0.89 # 79 # 747 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.253 1_1 - 223 AAA_23 PF13476.1 202 5.1e-07 18.1 2.9 1 1 2.6e-07 7.8e-07 17.5 2.9 29 124 12 168 10 222 0.44 # 79 # 747 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.253 1_1 - 223 CbiA PF01656.18 195 3.5e-26 79.7 0.1 1 1 1.5e-26 4.6e-26 79.3 0.1 1 173 4 163 4 189 0.75 # 79 # 747 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.253 1_1 - 223 AAA_31 PF13614.1 157 3.6e-10 27.9 0.0 1 2 1.2e-08 3.6e-08 21.5 0.0 2 66 3 80 2 83 0.75 # 79 # 747 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.253 1_1 - 223 AAA_31 PF13614.1 157 3.6e-10 27.9 0.0 2 2 0.0014 0.0043 4.9 0.0 116 152 79 117 71 121 0.79 # 79 # 747 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.253 1_1 - 223 ArgK PF03308.11 267 1.2e-05 12.0 0.0 1 1 7.8e-06 2.3e-05 11.1 0.0 39 69 12 42 6 50 0.92 # 79 # 747 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.253 1_1 - 223 RNA_helicase PF00910.17 107 1.7e-05 13.0 0.6 1 2 0.00025 0.00076 7.7 0.0 6 30 9 31 4 89 0.75 # 79 # 747 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.253 1_1 - 223 RNA_helicase PF00910.17 107 1.7e-05 13.0 0.6 2 2 0.0061 0.018 3.3 0.0 62 84 133 156 116 168 0.75 # 79 # 747 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.253 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/481f5493-b357-43ea-93d6-4cba9b27ba22 # Target file: checkm_output/bins/pAVFM02000083.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pAVFM02000083.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/481f5493-b357-43ea-93d6-4cba9b27ba22 checkm_output/bins/pAVFM02000083.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:36:00 2020 # [ok]