# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_8 - 141 SSB PF00436.20 104 5.6e-29 89.9 0.2 1 1 6.9e-30 7.6e-29 89.5 0.2 1 102 1 102 1 104 0.98 # 4053 # 4475 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.326 1_11 - 184 TraG-D_C PF12696.2 128 4.4e-05 13.2 0.0 1 1 6.5e-06 7.2e-05 12.5 0.0 16 75 43 98 37 114 0.80 # 5739 # 6290 # -1 # ID=1_11;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_11 - 184 AAA_10 PF12846.2 304 8.5e-20 61.1 0.0 1 1 1.1e-20 1.2e-19 60.6 0.0 207 301 12 104 4 107 0.91 # 5739 # 6290 # -1 # ID=1_11;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/babd8e08-eb3d-4667-b9cd-0e9dc42baa58 # Target file: checkm_output/bins/pAVFM02000075.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pAVFM02000075.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/babd8e08-eb3d-4667-b9cd-0e9dc42baa58 checkm_output/bins/pAVFM02000075.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:35:56 2020 # [ok]