# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 640 AIG1 PF04548.11 212 7.9e-06 13.0 0.0 1 1 6.6e-06 2e-05 11.7 0.0 32 62 51 81 43 108 0.84 # 798 # 2717 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.404 1_2 - 640 Septin PF00735.13 281 8.2e-06 12.9 0.1 1 1 4.9e-06 1.5e-05 12.0 0.1 7 77 6 82 3 91 0.68 # 798 # 2717 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.404 1_2 - 640 Miro PF08477.8 119 5.8e-07 18.0 0.0 1 1 4.4e-07 1.3e-06 16.9 0.0 9 119 13 131 5 131 0.75 # 798 # 2717 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.404 1_2 - 640 TIGR03594 TIGR03594 432 5.4e-10 26.3 0.3 1 3 0.044 0.13 -1.3 0.0 176 211 4 42 2 50 0.74 # 798 # 2717 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.404 1_2 - 640 TIGR03594 TIGR03594 432 5.4e-10 26.3 0.3 2 3 2e-08 6e-08 19.6 0.1 31 123 51 135 47 154 0.87 # 798 # 2717 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.404 1_2 - 640 TIGR03594 TIGR03594 432 5.4e-10 26.3 0.3 3 3 0.0017 0.0051 3.3 0.0 304 348 196 240 186 266 0.82 # 798 # 2717 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.404 1_2 - 640 MMR_HSR1 PF01926.18 116 1.3e-09 26.0 0.1 1 1 8.6e-10 2.6e-09 25.1 0.1 4 116 8 129 5 129 0.68 # 798 # 2717 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.404 1_2 - 640 GTP_EFTU_D2 PF03144.20 74 3.3e-10 28.0 0.0 1 1 2.3e-10 7e-10 27.0 0.0 3 60 265 316 263 323 0.90 # 798 # 2717 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.404 1_2 - 640 GTP_EFTU PF00009.22 188 1.9e-61 194.7 0.4 1 1 9.1e-62 2.7e-61 194.2 0.4 2 185 2 237 1 240 0.92 # 798 # 2717 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.404 1_2 - 640 EFG_IV PF03764.13 120 3.8e-27 82.3 0.0 1 1 3.5e-27 1e-26 80.8 0.0 1 120 416 532 416 532 0.98 # 798 # 2717 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.404 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/57ee23d9-5546-4943-8d2d-62251595146c # Target file: checkm_output/bins/pAVFM02000072.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pAVFM02000072.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/57ee23d9-5546-4943-8d2d-62251595146c checkm_output/bins/pAVFM02000072.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:35:53 2020 # [ok]