# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_40 - 193 MipZ PF09140.6 261 8.5e-13 39.8 0.5 1 2 4.4e-10 2.2e-08 25.4 0.1 2 40 2 40 1 55 0.88 # 40488 # 41066 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.501 1_40 - 193 MipZ PF09140.6 261 8.5e-13 39.8 0.5 2 2 2.4e-06 0.00012 13.1 0.1 94 135 71 112 57 123 0.84 # 40488 # 41066 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.501 1_40 - 193 YhjQ PF06564.7 244 0.00059 11.1 0.1 1 2 4.7e-05 0.0024 9.1 0.0 8 41 7 40 1 42 0.89 # 40488 # 41066 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.501 1_40 - 193 YhjQ PF06564.7 244 0.00059 11.1 0.1 2 2 0.045 2.3 -0.6 0.0 117 149 75 107 60 122 0.77 # 40488 # 41066 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.501 1_36 - 1187 UvrD_C_2 PF13538.1 104 3.7e-06 19.0 0.1 1 1 2.4e-07 1.2e-05 17.4 0.1 4 100 715 818 713 829 0.69 # 33074 # 36634 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.578 1_32 - 690 AAA_22 PF13401.1 131 9.6e-08 24.2 0.2 1 1 5.7e-08 9.5e-07 21.0 0.0 9 117 44 197 38 215 0.77 # 29853 # 31922 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.440 1_36 - 1187 AAA_22 PF13401.1 131 1e-06 20.8 0.0 1 1 2.8e-07 4.7e-06 18.7 0.0 6 126 465 580 460 585 0.82 # 33074 # 36634 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.578 1_45 - 242 AAA_22 PF13401.1 131 0.00021 13.4 0.0 1 1 4.1e-05 0.00068 11.7 0.0 4 114 35 182 31 197 0.64 # 44249 # 44974 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.492 1_40 - 193 ATP_bind_1 PF03029.12 238 4.6e-05 14.9 0.0 1 1 3.3e-06 0.00017 13.1 0.0 6 37 11 42 8 50 0.90 # 40488 # 41066 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.501 1_40 - 193 SRP54 PF00448.17 196 3.6e-05 15.2 0.0 1 1 1.2e-06 6e-05 14.5 0.0 10 38 10 38 1 45 0.87 # 40488 # 41066 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.501 1_32 - 690 KAP_NTPase PF07693.9 325 2.1e-61 199.6 0.0 1 1 7e-63 3.5e-61 198.8 0.0 2 321 20 299 19 303 0.96 # 29853 # 31922 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.440 1_45 - 242 AAA_21 PF13304.1 303 9.2e-15 47.2 0.0 1 2 7.4e-06 0.00037 12.4 0.3 2 30 38 64 37 91 0.67 # 44249 # 44974 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.492 1_45 - 242 AAA_21 PF13304.1 303 9.2e-15 47.2 0.0 2 2 2.8e-12 1.4e-10 33.5 0.0 191 298 110 192 63 196 0.70 # 44249 # 44974 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.492 1_40 - 193 MobB PF03205.9 140 0.00023 12.8 0.0 1 1 7.9e-06 0.0004 12.1 0.0 7 39 8 39 1 53 0.82 # 40488 # 41066 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.501 1_40 - 193 LpxK PF02606.9 326 0.00029 11.7 0.0 1 1 7.4e-06 0.00037 11.4 0.0 45 71 9 35 1 53 0.88 # 40488 # 41066 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.501 1_40 - 193 ArsA_ATPase PF02374.10 305 3.6e-08 24.6 0.2 1 2 1.4e-09 7e-08 23.7 0.1 6 48 6 48 1 75 0.87 # 40488 # 41066 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.501 1_40 - 193 ArsA_ATPase PF02374.10 305 3.6e-08 24.6 0.2 2 2 0.055 2.7 -1.2 0.0 100 136 51 85 43 90 0.76 # 40488 # 41066 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.501 1_36 - 1187 PhoH PF02562.11 205 1.1e-05 16.7 0.1 1 2 0.00097 0.049 4.7 0.1 6 34 448 478 443 503 0.80 # 33074 # 36634 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.578 1_36 - 1187 PhoH PF02562.11 205 1.1e-05 16.7 0.1 2 2 4.1e-05 0.002 9.2 0.0 121 170 544 593 542 614 0.80 # 33074 # 36634 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.578 1_32 - 690 Zeta_toxin PF06414.7 201 0.0005 11.1 0.0 1 2 4.7e-05 0.0023 8.9 0.0 4 41 29 64 26 72 0.82 # 29853 # 31922 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.440 1_32 - 690 Zeta_toxin PF06414.7 201 0.0005 11.1 0.0 2 2 0.062 3.1 -1.3 0.0 140 185 330 376 325 384 0.79 # 29853 # 31922 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.440 1_45 - 242 SMC_N PF02463.14 220 4.5e-06 17.9 0.0 1 2 0.00013 0.0065 7.6 0.0 25 44 36 55 18 62 0.81 # 44249 # 44974 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.492 1_45 - 242 SMC_N PF02463.14 220 4.5e-06 17.9 0.0 2 2 7.1e-05 0.0036 8.4 0.0 139 200 136 194 97 211 0.77 # 44249 # 44974 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.492 1_40 - 193 VirC1 PF07015.6 231 9.5e-09 26.5 0.0 1 1 4.7e-10 2.4e-08 25.2 0.0 4 120 3 112 1 124 0.82 # 40488 # 41066 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.501 1_40 - 193 Fer4_NifH PF00142.13 273 6.5e-05 14.1 0.0 1 1 2.1e-06 0.0001 13.4 0.0 5 40 6 41 2 50 0.90 # 40488 # 41066 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.501 1_32 - 690 Arch_ATPase PF01637.13 234 1.6e-06 19.8 0.0 1 1 6.9e-08 3.4e-06 18.8 0.0 21 131 40 177 28 191 0.76 # 29853 # 31922 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.440 1_32 - 690 AAA_16 PF13191.1 185 7.3e-07 21.2 0.3 1 1 3.5e-07 8.6e-06 17.7 0.0 28 176 43 190 17 198 0.67 # 29853 # 31922 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.440 1_36 - 1187 AAA_16 PF13191.1 185 0.0001 14.2 0.4 1 1 4.1e-06 0.0001 14.2 0.4 16 117 455 560 449 691 0.62 # 33074 # 36634 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.578 1_40 - 193 CbiA PF01656.18 195 9.8e-27 85.5 0.0 1 1 2.7e-28 1.3e-26 85.1 0.0 1 177 3 151 3 168 0.78 # 40488 # 41066 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.501 1_45 - 242 AAA_29 PF13555.1 62 1.6e-05 16.4 0.0 1 1 6e-07 3e-05 15.5 0.0 16 40 29 52 22 55 0.81 # 44249 # 44974 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.492 1_45 - 242 DUF258 PF03193.11 161 0.00055 11.1 0.0 1 1 1.7e-05 0.00083 10.5 0.0 18 64 17 64 5 72 0.79 # 44249 # 44974 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.492 1_40 - 193 AAA_31 PF13614.1 157 5.3e-12 37.9 0.0 1 2 5.3e-11 2.6e-09 29.1 0.0 2 43 2 43 1 50 0.93 # 40488 # 41066 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.501 1_40 - 193 AAA_31 PF13614.1 157 5.3e-12 37.9 0.0 2 2 0.00039 0.019 6.8 0.0 119 155 77 112 60 114 0.85 # 40488 # 41066 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.501 1_36 - 1187 AAA_30 PF13604.1 196 3.4e-59 191.6 10.0 1 1 2.8e-60 1.4e-58 189.6 10.0 1 195 446 648 446 649 0.96 # 33074 # 36634 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.578 1_45 - 242 ABC_tran PF00005.22 137 1.1e-26 85.7 0.0 1 1 6.4e-28 1.6e-26 85.2 0.0 1 137 25 162 25 162 0.90 # 44249 # 44974 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.492 1_32 - 690 ABC_tran PF00005.22 137 1.5e-05 17.2 0.0 1 1 2.2e-06 5.6e-05 15.4 0.0 4 44 32 72 29 98 0.88 # 29853 # 31922 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.440 1_36 - 1187 AAA_19 PF13245.1 76 7.6e-10 30.4 6.0 1 2 1.2e-09 5.9e-08 24.4 4.0 4 73 459 520 453 523 0.71 # 33074 # 36634 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.578 1_36 - 1187 AAA_19 PF13245.1 76 7.6e-10 30.4 6.0 2 2 0.0023 0.12 4.2 0.0 26 62 652 687 631 702 0.75 # 33074 # 36634 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.578 1_40 - 193 AAA_10 PF12846.2 304 0.00047 11.5 0.0 1 1 1.1e-05 0.00057 11.2 0.0 11 47 11 49 4 98 0.84 # 40488 # 41066 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.501 1_36 - 1187 AAA_11 PF13086.1 236 2.7e-06 19.0 8.4 1 2 0.00045 0.023 6.2 0.0 3 75 448 513 446 539 0.83 # 33074 # 36634 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.578 1_36 - 1187 AAA_11 PF13086.1 236 2.7e-06 19.0 8.4 2 2 2.5e-07 1.2e-05 16.8 0.1 194 231 544 584 535 587 0.81 # 33074 # 36634 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.578 1_40 - 193 ArgK PF03308.11 267 8.4e-05 13.3 0.0 1 1 2.3e-06 0.00011 12.9 0.0 32 69 3 41 1 47 0.84 # 40488 # 41066 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.501 1_36 - 1187 PIF1 PF05970.9 364 1.8e-06 19.0 0.1 1 1 6.2e-08 3.1e-06 18.2 0.1 2 116 447 556 446 602 0.86 # 33074 # 36634 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.578 1_32 - 690 NACHT PF05729.7 166 3.9e-05 15.3 1.4 1 1 2.5e-05 0.0013 10.4 0.6 5 95 44 178 41 212 0.78 # 29853 # 31922 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.440 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/f493b85a-b9e2-49d7-98c4-e9361b9c92d7 # Target file: checkm_output/bins/pAP005226.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pAP005226.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f493b85a-b9e2-49d7-98c4-e9361b9c92d7 checkm_output/bins/pAP005226.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:35:52 2020 # [ok]