# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_6 - 196 MipZ PF09140.6 261 1e-12 38.4 0.9 1 1 4e-12 4.6e-11 33.0 0.9 3 108 3 110 1 124 0.63 # 7257 # 7844 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_16 - 195 MipZ PF09140.6 261 6.7e-11 32.5 0.1 1 2 7e-08 8.1e-07 19.1 0.0 5 66 5 65 1 77 0.79 # 16770 # 17354 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.530 1_16 - 195 MipZ PF09140.6 261 6.7e-11 32.5 0.1 2 2 9.3e-06 0.00011 12.2 0.1 98 137 75 114 64 147 0.85 # 16770 # 17354 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.530 1_3 - 1155 UvrD_C_2 PF13538.1 104 8.9e-07 19.9 0.0 1 1 1.9e-07 4.3e-06 17.7 0.0 3 103 736 843 734 844 0.71 # 2550 # 6014 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_3 - 1155 AAA_22 PF13401.1 131 1.2e-06 19.5 0.0 1 1 3.4e-07 7.9e-06 16.9 0.0 8 126 490 603 485 608 0.79 # 2550 # 6014 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_16 - 195 DUF1611 PF07755.6 301 0.00024 10.6 0.0 1 1 1.5e-05 0.00035 10.1 0.0 114 151 2 39 1 47 0.87 # 16770 # 17354 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.530 1_6 - 196 AAA_17 PF13207.1 121 5.6e-05 14.8 0.0 1 1 3.8e-06 8.7e-05 14.2 0.0 9 78 11 113 9 168 0.61 # 7257 # 7844 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_6 - 196 LpxK PF02606.9 326 0.0001 12.1 0.0 1 1 7.5e-06 0.00017 11.4 0.0 46 71 10 35 2 46 0.93 # 7257 # 7844 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_6 - 196 ArsA_ATPase PF02374.10 305 1.9e-07 21.1 0.0 1 1 2.6e-08 3e-07 20.5 0.0 6 38 6 38 1 54 0.88 # 7257 # 7844 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_16 - 195 ArsA_ATPase PF02374.10 305 6.2e-06 16.2 0.0 1 1 7.8e-07 9e-06 15.7 0.0 1 42 1 42 1 54 0.84 # 16770 # 17354 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.530 1_16 - 195 AAA_26 PF13500.1 199 0.00012 12.6 0.1 1 2 4.4e-05 0.001 9.5 0.1 8 35 8 35 4 105 0.91 # 16770 # 17354 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.530 1_16 - 195 AAA_26 PF13500.1 199 0.00012 12.6 0.1 2 2 0.016 0.36 1.2 0.0 155 196 121 167 89 169 0.75 # 16770 # 17354 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.530 1_16 - 195 VirC1 PF07015.6 231 9.5e-13 38.5 0.0 1 1 1.6e-13 1.8e-12 37.6 0.0 4 132 3 124 1 136 0.81 # 16770 # 17354 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.530 1_6 - 196 VirC1 PF07015.6 231 4.1e-10 29.9 0.0 1 1 7.9e-11 9.1e-10 28.8 0.0 4 182 3 169 1 182 0.84 # 7257 # 7844 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_6 - 196 Fer4_NifH PF00142.13 273 4.1e-05 13.6 0.0 1 1 2.6e-06 6.1e-05 13.1 0.0 4 37 5 38 2 43 0.89 # 7257 # 7844 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_3 - 1155 AAA_16 PF13191.1 185 0.0056 7.5 8.9 1 2 1.7e-05 0.0004 11.2 0.2 16 56 478 518 473 628 0.72 # 2550 # 6014 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_3 - 1155 AAA_16 PF13191.1 185 0.0056 7.5 8.9 2 2 0.077 1.8 -0.7 0.6 82 100 1012 1030 960 1108 0.55 # 2550 # 6014 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_16 - 195 CbiA PF01656.18 195 1.8e-25 80.3 0.0 1 1 2.9e-26 3.3e-25 79.4 0.0 1 192 3 165 3 168 0.74 # 16770 # 17354 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.530 1_6 - 196 CbiA PF01656.18 195 5.4e-23 72.2 0.0 1 1 7.4e-24 8.5e-23 71.6 0.0 1 178 3 156 3 171 0.78 # 7257 # 7844 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_22 - 539 N6_Mtase PF02384.11 311 4.8e-09 26.4 0.0 1 1 3.8e-10 8.6e-09 25.6 0.0 10 63 310 376 307 519 0.79 # 20887 # 22503 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_6 - 196 AAA_31 PF13614.1 157 2.5e-09 28.1 0.0 1 2 1.1e-07 1.2e-06 19.4 0.0 6 43 6 43 1 55 0.85 # 7257 # 7844 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_6 - 196 AAA_31 PF13614.1 157 2.5e-09 28.1 0.0 2 2 0.00077 0.0089 6.8 0.0 119 155 80 115 75 117 0.88 # 7257 # 7844 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_16 - 195 AAA_31 PF13614.1 157 4.2e-05 14.3 0.0 1 2 0.00065 0.0075 7.0 0.0 3 39 3 39 2 52 0.81 # 16770 # 17354 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.530 1_16 - 195 AAA_31 PF13614.1 157 4.2e-05 14.3 0.0 2 2 0.0033 0.038 4.7 0.0 122 155 80 112 78 114 0.88 # 16770 # 17354 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.530 1_22 - 539 Methyltransf_26 PF13659.1 117 9.5e-08 23.0 0.0 1 1 1.2e-08 2.7e-07 21.5 0.0 3 83 362 493 360 522 0.68 # 20887 # 22503 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_3 - 1155 AAA_30 PF13604.1 196 7.7e-58 186.1 7.6 1 1 3.4e-59 7.7e-58 186.1 7.6 1 195 469 671 469 672 0.96 # 2550 # 6014 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_3 - 1155 AAA_19 PF13245.1 76 1.5e-10 31.7 4.5 1 2 1.7e-09 1.9e-08 24.8 1.5 13 75 489 545 476 546 0.80 # 2550 # 6014 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_3 - 1155 AAA_19 PF13245.1 76 1.5e-10 31.7 4.5 2 2 0.001 0.012 6.3 0.1 16 61 664 709 653 735 0.71 # 2550 # 6014 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_6 - 196 AAA_19 PF13245.1 76 3.3e-05 14.5 2.0 1 2 7.6e-05 0.00088 9.9 0.1 13 48 4 35 3 54 0.84 # 7257 # 7844 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_6 - 196 AAA_19 PF13245.1 76 3.3e-05 14.5 2.0 2 2 0.0077 0.089 3.5 0.3 10 23 79 92 71 137 0.70 # 7257 # 7844 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_6 - 196 NAD_binding_10 PF13460.1 183 2.2e-05 15.4 1.3 1 2 0.00053 0.012 6.4 0.2 13 29 20 36 5 62 0.74 # 7257 # 7844 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_6 - 196 NAD_binding_10 PF13460.1 183 2.2e-05 15.4 1.3 2 2 0.00013 0.0031 8.4 0.1 33 107 70 145 47 162 0.81 # 7257 # 7844 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_6 - 196 AAA_10 PF12846.2 304 1.2e-05 15.6 0.0 1 1 5.6e-07 1.3e-05 15.6 0.0 8 48 8 52 4 153 0.84 # 7257 # 7844 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_3 - 1155 AAA_11 PF13086.1 236 5e-08 23.6 8.2 1 3 0.00059 0.013 5.8 0.0 2 75 470 536 469 556 0.87 # 2550 # 6014 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_3 - 1155 AAA_11 PF13086.1 236 5e-08 23.6 8.2 2 3 9.3e-08 2.1e-06 18.2 0.2 194 231 567 607 562 610 0.85 # 2550 # 6014 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_3 - 1155 AAA_11 PF13086.1 236 5e-08 23.6 8.2 3 3 0.017 0.38 1.0 1.7 100 155 958 1031 932 1047 0.56 # 2550 # 6014 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_6 - 196 ArgK PF03308.11 267 7.7e-05 12.3 0.1 1 1 5.9e-06 0.00014 11.5 0.1 38 67 10 39 3 44 0.89 # 7257 # 7844 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_3 - 1155 PIF1 PF05970.9 364 1.2e-05 15.1 0.0 1 1 1.2e-06 2.9e-05 13.9 0.0 25 116 489 579 469 640 0.82 # 2550 # 6014 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/76ae6a8c-f622-40f0-9a97-1bbc646310c8 # Target file: checkm_output/bins/pAP005225.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pAP005225.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/76ae6a8c-f622-40f0-9a97-1bbc646310c8 checkm_output/bins/pAP005225.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:35:49 2020 # [ok]