# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 4_3 - 104 RuvB_C PF05491.8 76 0.0002 14.2 0.3 1 2 0.014 1.7 1.6 0.0 4 40 8 44 7 48 0.68 # 2494 # 2805 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.337 4_3 - 104 RuvB_C PF05491.8 76 0.0002 14.2 0.3 2 2 5.2e-06 0.00064 12.6 0.1 13 50 42 79 27 90 0.80 # 2494 # 2805 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.337 3_9 - 215 Rad17 PF03215.10 519 0.00012 14.0 0.0 1 1 2.1e-06 0.00025 12.9 0.0 42 84 26 68 14 76 0.83 # 5007 # 5651 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 3_14 - 227 NB-ARC PF00931.17 287 0.00091 11.3 0.0 1 1 1.2e-05 0.0014 10.6 0.0 20 39 32 51 20 67 0.83 # 9809 # 10489 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.423 3_14 - 227 AAA_22 PF13401.1 131 3.5e-05 17.2 0.3 1 1 1.8e-06 0.00023 14.5 0.3 3 22 30 49 28 206 0.82 # 9809 # 10489 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.423 9_4 - 182 DUF1611 PF07755.6 301 0.00038 12.3 1.1 1 1 4.3e-06 0.00053 11.8 1.0 46 97 106 158 82 178 0.82 # 2796 # 3341 # -1 # ID=9_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.326 3_9 - 215 AAA_15 PF13175.1 415 2.4e-09 29.9 8.3 1 2 8.7e-08 1.1e-05 17.8 2.6 12 57 5 80 2 134 0.64 # 5007 # 5651 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 3_9 - 215 AAA_15 PF13175.1 415 2.4e-09 29.9 8.3 2 2 4.6e-07 5.6e-05 15.5 0.3 371 414 150 194 137 195 0.85 # 5007 # 5651 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 3_9 - 215 AAA_17 PF13207.1 121 9e-05 16.5 0.0 1 1 2.5e-06 0.00015 15.8 0.0 1 100 31 160 31 201 0.53 # 5007 # 5651 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 3_14 - 227 AAA_17 PF13207.1 121 0.00017 15.6 0.3 1 1 5.4e-06 0.00033 14.7 0.3 2 19 34 51 33 126 0.88 # 9809 # 10489 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.423 3_9 - 215 AAA_21 PF13304.1 303 5.1e-15 49.3 4.5 1 1 1.9e-15 1.2e-13 44.8 4.5 6 301 36 194 36 196 0.79 # 5007 # 5651 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 3_14 - 227 AAA_21 PF13304.1 303 9.9e-14 45.1 0.0 1 2 1.7e-07 1e-05 18.8 0.0 3 43 35 82 33 95 0.69 # 9809 # 10489 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.423 3_14 - 227 AAA_21 PF13304.1 303 9.9e-14 45.1 0.0 2 2 4.3e-09 2.7e-07 24.0 0.0 235 299 140 201 138 205 0.92 # 9809 # 10489 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.423 3_14 - 227 MobB PF03205.9 140 0.00063 12.7 0.1 1 2 2.3e-05 0.0029 10.5 0.0 3 19 34 50 32 54 0.89 # 9809 # 10489 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.423 3_14 - 227 MobB PF03205.9 140 0.00063 12.7 0.1 2 2 0.083 10 -1.0 0.0 44 69 181 203 167 220 0.58 # 9809 # 10489 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.423 3_14 - 227 SMC_N PF02463.14 220 5.9e-09 28.6 0.4 1 1 3e-08 1.9e-06 20.5 0.4 24 205 31 207 22 219 0.73 # 9809 # 10489 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.423 3_9 - 215 SMC_N PF02463.14 220 1.2e-06 21.1 0.0 1 2 0.00029 0.018 7.5 0.0 27 44 32 49 4 75 0.88 # 5007 # 5651 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 3_9 - 215 SMC_N PF02463.14 220 1.2e-06 21.1 0.0 2 2 1.6e-05 0.00097 11.6 0.0 156 204 148 197 139 207 0.82 # 5007 # 5651 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 3_9 - 215 Arch_ATPase PF01637.13 234 2.7e-07 23.7 0.3 1 1 4.3e-09 5.3e-07 22.7 0.3 17 103 26 120 18 188 0.64 # 5007 # 5651 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 3_14 - 227 AAA_16 PF13191.1 185 3.2e-05 17.2 0.1 1 1 6.4e-07 3.9e-05 16.9 0.1 20 42 27 49 20 167 0.91 # 9809 # 10489 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.423 3_9 - 215 AAA_16 PF13191.1 185 5.1e-05 16.5 0.0 1 1 1.1e-06 6.9e-05 16.1 0.0 18 49 23 54 13 186 0.87 # 5007 # 5651 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 3_9 - 215 AAA_23 PF13476.1 202 5e-06 20.2 5.6 1 2 4.4e-06 0.00027 14.5 0.2 3 40 4 50 3 53 0.65 # 5007 # 5651 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 3_9 - 215 AAA_23 PF13476.1 202 5e-06 20.2 5.6 2 2 0.00035 0.022 8.3 2.0 110 177 50 150 48 200 0.62 # 5007 # 5651 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 3_14 - 227 AAA_23 PF13476.1 202 0.00071 13.1 0.1 1 1 1.8e-05 0.0011 12.5 0.1 21 39 33 51 3 54 0.84 # 9809 # 10489 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.423 3_9 - 215 AAA_18 PF13238.1 129 9.8e-06 19.1 0.0 1 2 5.8e-06 0.00036 14.1 0.0 1 35 32 72 32 112 0.72 # 5007 # 5651 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 3_9 - 215 AAA_18 PF13238.1 129 9.8e-06 19.1 0.0 2 2 0.018 1.1 2.8 0.0 47 85 159 194 143 204 0.83 # 5007 # 5651 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 3_14 - 227 AAA_18 PF13238.1 129 0.00024 14.6 0.0 1 2 2.9e-05 0.0018 11.8 0.0 1 18 34 51 34 122 0.80 # 9809 # 10489 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.423 3_14 - 227 AAA_18 PF13238.1 129 0.00024 14.6 0.0 2 2 0.065 4 1.0 0.0 48 97 169 212 127 221 0.77 # 9809 # 10489 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.423 3_9 - 215 AAA_13 PF13166.1 712 4.3e-10 31.8 0.5 1 2 5e-07 6.1e-05 14.8 0.1 23 59 36 72 31 134 0.66 # 5007 # 5651 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 3_9 - 215 AAA_13 PF13166.1 712 4.3e-10 31.8 0.5 2 2 3.1e-07 3.8e-05 15.5 0.0 527 562 150 184 139 189 0.83 # 5007 # 5651 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 3_9 - 215 AAA_14 PF13173.1 128 7.1e-06 19.2 0.7 1 1 3.7e-06 0.00015 14.9 0.7 3 57 30 76 28 206 0.74 # 5007 # 5651 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 4_7 - 935 AAA_14 PF13173.1 128 0.0015 11.7 1.4 1 1 0.00012 0.005 10.0 0.2 31 85 663 715 650 747 0.71 # 7419 # 10223 # 1 # ID=4_7;partial=01;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.350 12_2 - 755 AAA_14 PF13173.1 128 0.013 8.6 9.7 1 1 3.5e-05 0.0014 11.7 0.8 20 78 694 752 689 755 0.77 # 841 # 3105 # 1 # ID=12_2;partial=01;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.304 3_14 - 227 AAA_29 PF13555.1 62 1.6e-06 20.8 0.1 1 1 5e-08 3.1e-06 19.9 0.1 19 40 28 48 21 59 0.81 # 9809 # 10489 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.423 3_9 - 215 AAA_29 PF13555.1 62 0.00012 14.8 0.0 1 1 3.3e-06 0.0002 14.1 0.0 20 47 27 53 18 67 0.71 # 5007 # 5651 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 3_9 - 215 AAA PF00004.24 132 0.00015 15.2 0.0 1 1 7.5e-06 0.00092 12.6 0.0 3 38 34 90 32 212 0.77 # 5007 # 5651 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 20_2 - 94 CobU PF02283.11 167 0.00039 13.0 0.0 1 1 3.2e-06 0.00039 13.0 0.0 37 65 22 50 12 91 0.83 # 203 # 484 # 1 # ID=20_2;partial=01;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.394 1_2 - 300 GHMP_kinases_N PF00288.21 67 1.1e-08 28.3 0.0 1 1 1.8e-10 2.2e-08 27.3 0.0 2 49 97 144 96 156 0.93 # 1819 # 2718 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.359 3_14 - 227 MMR_HSR1 PF01926.18 116 0.00071 12.8 0.4 1 1 9.8e-06 0.0012 12.0 0.4 2 19 34 51 33 205 0.88 # 9809 # 10489 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.423 3_14 - 227 DUF258 PF03193.11 161 1.3e-05 17.6 0.0 1 1 1.8e-07 2.3e-05 16.8 0.0 32 55 27 51 8 66 0.85 # 9809 # 10489 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.423 3_14 - 227 AAA_33 PF13671.1 143 0.00029 13.9 0.6 1 1 2.4e-05 0.0015 11.6 0.6 2 17 34 49 33 220 0.69 # 9809 # 10489 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.423 3_9 - 215 AAA_33 PF13671.1 143 0.00071 12.7 0.0 1 1 0.00011 0.0065 9.6 0.0 2 33 32 97 31 209 0.47 # 5007 # 5651 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 3_14 - 227 AAA_30 PF13604.1 196 4.3e-05 16.4 0.2 1 2 2.5e-05 0.003 10.3 0.0 16 38 29 51 23 61 0.80 # 9809 # 10489 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.423 3_14 - 227 AAA_30 PF13604.1 196 4.3e-05 16.4 0.2 2 2 0.002 0.25 4.1 0.1 70 128 132 198 113 207 0.70 # 9809 # 10489 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.423 3_9 - 215 VirE PF05272.6 198 0.00027 13.6 0.1 1 2 2.1e-05 0.0026 10.4 0.0 54 88 31 71 26 79 0.69 # 5007 # 5651 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 3_9 - 215 VirE PF05272.6 198 0.00027 13.6 0.1 2 2 0.016 2 1.0 0.0 86 125 91 132 83 144 0.62 # 5007 # 5651 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 1_3 - 236 tRNA-synt_2c PF01411.14 552 5.1e-12 37.9 0.3 1 1 6.3e-14 7.7e-12 37.4 0.3 474 544 14 78 7 103 0.78 # 2766 # 3473 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.356 3_14 - 227 ABC_tran PF00005.22 137 3.9e-35 114.3 0.0 1 1 8.7e-37 5.4e-35 113.9 0.0 1 136 21 169 21 170 0.92 # 9809 # 10489 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.423 3_9 - 215 ABC_tran PF00005.22 137 4.5e-23 75.3 0.0 1 1 1e-24 6.2e-23 74.8 0.0 1 136 19 160 19 161 0.90 # 5007 # 5651 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 3_9 - 215 AAA_19 PF13245.1 76 0.0014 11.6 0.0 1 1 1.9e-05 0.0024 10.9 0.0 10 35 29 53 23 73 0.82 # 5007 # 5651 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 3_14 - 227 AAA_10 PF12846.2 304 7.3e-06 18.7 0.1 1 2 6.9e-07 8.5e-05 15.2 0.0 6 22 36 52 33 73 0.83 # 9809 # 10489 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.423 3_14 - 227 AAA_10 PF12846.2 304 7.3e-06 18.7 0.1 2 2 0.011 1.4 1.4 0.0 215 262 154 200 130 221 0.84 # 9809 # 10489 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.423 3_9 - 215 SbcCD_C PF13558.1 90 2.9e-05 17.2 0.0 1 1 8.2e-07 5.1e-05 16.4 0.0 64 90 151 177 138 177 0.85 # 5007 # 5651 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 3_14 - 227 SbcCD_C PF13558.1 90 0.00018 14.6 0.1 1 1 1.9e-05 0.0012 12.0 0.1 32 89 141 185 118 186 0.80 # 9809 # 10489 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.423 5_1 - 113 DOT1 PF08123.8 205 2.6e-05 16.8 0.1 1 1 2.5e-07 3.1e-05 16.5 0.1 69 148 31 109 17 111 0.86 # 327 # 665 # -1 # ID=5_1;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.274 3_14 - 227 DEAD PF00270.24 169 0.00041 13.1 0.0 1 1 5.8e-06 0.00071 12.3 0.0 11 150 27 190 18 203 0.70 # 9809 # 10489 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.423 1_3 - 236 TIGR00344 TIGR00344 847 5.4e-29 93.8 0.2 1 2 3.5e-26 4.3e-24 77.6 0.0 473 622 19 176 10 186 0.83 # 2766 # 3473 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.356 1_3 - 236 TIGR00344 TIGR00344 847 5.4e-29 93.8 0.2 2 2 5.6e-07 6.9e-05 14.0 0.3 659 680 196 217 188 231 0.79 # 2766 # 3473 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.356 3_9 - 215 RNA_helicase PF00910.17 107 3.2e-05 17.3 0.1 1 1 5.1e-07 6.2e-05 16.4 0.1 1 26 32 57 32 122 0.79 # 5007 # 5651 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 3_9 - 215 UPF0079 PF02367.12 123 0.00016 14.5 0.0 1 1 2.6e-06 0.00032 13.5 0.0 11 42 25 56 17 61 0.85 # 5007 # 5651 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 3_14 - 227 AAA_24 PF13479.1 213 4.9e-05 16.2 0.0 1 2 0.00046 0.057 6.1 0.0 7 20 35 48 32 57 0.87 # 9809 # 10489 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.423 3_14 - 227 AAA_24 PF13479.1 213 4.9e-05 16.2 0.0 2 2 0.00012 0.015 8.0 0.0 78 141 145 205 143 218 0.80 # 9809 # 10489 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.423 3_9 - 215 NACHT PF05729.7 166 2e-06 20.7 0.0 1 1 3.3e-08 4.1e-06 19.7 0.0 2 27 31 56 30 84 0.83 # 5007 # 5651 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 3_14 - 227 AAA_25 PF13481.1 194 0.00016 14.3 0.1 1 2 5.4e-06 0.00066 12.3 0.0 30 50 28 48 20 76 0.88 # 9809 # 10489 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.423 3_14 - 227 AAA_25 PF13481.1 194 0.00016 14.3 0.1 2 2 0.048 6 -0.6 0.0 166 188 178 199 114 203 0.60 # 9809 # 10489 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.423 3_9 - 215 AAA_5 PF07728.9 139 2.2e-05 17.4 0.0 1 2 7.2e-07 8.9e-05 15.4 0.0 3 39 33 69 31 84 0.83 # 5007 # 5651 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 3_9 - 215 AAA_5 PF07728.9 139 2.2e-05 17.4 0.0 2 2 0.071 8.7 -0.7 0.0 63 75 148 160 113 187 0.63 # 5007 # 5651 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/84b46cf0-0460-441b-b74c-7ed38bb243df # Target file: checkm_output/bins/pAL731825.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pAL731825.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/84b46cf0-0460-441b-b74c-7ed38bb243df checkm_output/bins/pAL731825.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:35:48 2020 # [ok]