# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_21 - 493 cobW PF02492.14 178 0.00034 11.6 0.1 1 2 0.027 1 0.3 0.0 83 101 39 57 13 76 0.76 # 16941 # 18419 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.732 1_21 - 493 cobW PF02492.14 178 0.00034 11.6 0.1 2 2 8.1e-05 0.0031 8.5 0.0 4 37 109 141 106 162 0.75 # 16941 # 18419 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.732 1_5 - 311 MipZ PF09140.6 261 4.6e-12 37.0 0.0 1 2 1.3e-12 5.1e-11 33.6 0.0 2 47 53 98 52 122 0.92 # 4005 # 4937 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.728 1_5 - 311 MipZ PF09140.6 261 4.6e-12 37.0 0.0 2 2 0.0094 0.36 1.3 0.0 86 150 160 226 134 234 0.75 # 4005 # 4937 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.728 1_5 - 311 SRP54 PF00448.17 196 1.4e-05 16.2 0.1 1 2 2.6e-06 0.0001 13.3 0.1 10 43 61 94 51 99 0.84 # 4005 # 4937 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.728 1_5 - 311 SRP54 PF00448.17 196 1.4e-05 16.2 0.1 2 2 0.023 0.88 0.5 0.0 67 92 158 183 143 248 0.76 # 4005 # 4937 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.728 1_5 - 311 LpxK PF02606.9 326 0.00023 11.7 0.0 1 1 9.3e-06 0.00035 11.1 0.0 39 71 55 86 43 100 0.82 # 4005 # 4937 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.728 1_5 - 311 ArsA_ATPase PF02374.10 305 5.6e-05 13.8 0.1 1 1 3.3e-06 0.00013 12.6 0.0 3 38 54 89 52 94 0.92 # 4005 # 4937 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.728 1_5 - 311 VirC1 PF07015.6 231 2.1e-08 25.0 0.1 1 2 6.2e-09 2.3e-07 21.6 0.0 6 47 56 98 52 131 0.84 # 4005 # 4937 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.728 1_5 - 311 VirC1 PF07015.6 231 2.1e-08 25.0 0.1 2 2 0.0098 0.37 1.3 0.0 74 142 165 233 152 273 0.68 # 4005 # 4937 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.728 1_5 - 311 Fer4_NifH PF00142.13 273 2.2e-05 15.2 0.0 1 2 2.5e-06 9.6e-05 13.1 0.0 4 39 56 91 53 101 0.88 # 4005 # 4937 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.728 1_5 - 311 Fer4_NifH PF00142.13 273 2.2e-05 15.2 0.0 2 2 0.042 1.6 -0.7 0.0 152 235 210 293 192 303 0.52 # 4005 # 4937 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.728 1_5 - 311 AAA_16 PF13191.1 185 0.00016 13.2 0.3 1 1 1e-05 0.00039 11.9 0.2 33 103 61 142 44 226 0.74 # 4005 # 4937 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.728 1_5 - 311 CbiA PF01656.18 195 4.5e-30 96.0 0.0 1 1 1.5e-31 5.7e-30 95.7 0.0 2 161 55 245 54 276 0.77 # 4005 # 4937 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.728 1_5 - 311 AAA_31 PF13614.1 157 4.9e-06 18.1 0.0 1 2 5.4e-06 0.00021 12.8 0.0 1 41 52 92 52 213 0.75 # 4005 # 4937 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.728 1_5 - 311 AAA_31 PF13614.1 157 4.9e-06 18.1 0.0 2 2 0.041 1.6 0.2 0.0 14 32 244 262 242 267 0.84 # 4005 # 4937 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.728 1_5 - 311 AAA_30 PF13604.1 196 3.4e-06 18.3 1.8 1 2 1.9e-07 7.2e-06 17.2 0.7 15 54 49 88 44 96 0.83 # 4005 # 4937 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.728 1_5 - 311 AAA_30 PF13604.1 196 3.4e-06 18.3 1.8 2 2 0.069 2.6 -0.9 0.0 133 167 201 233 178 254 0.67 # 4005 # 4937 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.728 1_21 - 493 FtsK_SpoIIIE PF01580.13 205 8.6e-06 16.9 0.0 1 1 4.2e-07 1.6e-05 16.0 0.0 42 61 109 128 74 131 0.87 # 16941 # 18419 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.732 1_21 - 493 DAP3 PF10236.4 309 0.00038 10.9 0.1 1 1 1.9e-05 0.00073 10.0 0.1 28 60 110 141 108 146 0.77 # 16941 # 18419 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.732 1_5 - 311 AAA_19 PF13245.1 76 1.4e-05 16.3 1.6 1 1 1.3e-06 2.4e-05 15.6 0.3 13 52 55 91 44 98 0.79 # 4005 # 4937 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.728 1_21 - 493 AAA_19 PF13245.1 76 0.0022 9.3 5.1 1 1 4.9e-05 0.00093 10.6 1.3 14 34 109 129 104 180 0.86 # 16941 # 18419 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.732 1_21 - 493 AAA_10 PF12846.2 304 2e-05 15.6 0.2 1 2 7.2e-06 0.00014 12.9 0.1 5 39 109 143 106 162 0.87 # 16941 # 18419 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.732 1_21 - 493 AAA_10 PF12846.2 304 2e-05 15.6 0.2 2 2 0.049 0.92 0.3 0.0 239 279 225 264 160 284 0.63 # 16941 # 18419 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.732 1_5 - 311 AAA_10 PF12846.2 304 0.00043 11.2 0.0 1 1 3.6e-05 0.00069 10.6 0.0 11 41 62 92 60 112 0.85 # 4005 # 4937 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.728 1_21 - 493 TrwB_AAD_bind PF10412.4 386 8.1e-05 12.8 0.0 1 1 3.4e-06 0.00013 12.2 0.0 19 52 109 142 101 146 0.93 # 16941 # 18419 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.732 1_21 - 493 AAA_25 PF13481.1 194 4e-05 14.6 1.5 1 1 6e-06 0.00011 13.1 1.2 37 132 109 208 84 219 0.64 # 16941 # 18419 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.732 1_5 - 311 AAA_25 PF13481.1 194 8.1e-05 13.6 0.0 1 1 1.3e-05 0.00025 12.0 0.0 35 86 54 95 21 118 0.78 # 4005 # 4937 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.728 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/78ec0e78-c83b-4698-90c6-d5591f76e8dd # Target file: checkm_output/bins/pAL645771.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pAL645771.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/78ec0e78-c83b-4698-90c6-d5591f76e8dd checkm_output/bins/pAL645771.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:35:47 2020 # [ok]