# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_1 - 176 Mg_chelatase PF01078.16 207 3.6e-05 11.6 0.0 1 1 1.1e-05 5.4e-05 11.0 0.0 23 40 141 158 120 165 0.70 # 2 # 529 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 1_1 - 176 cobW PF02492.14 178 6.8e-06 14.3 0.0 1 1 1.9e-06 9.6e-06 13.8 0.0 3 21 143 161 141 173 0.84 # 2 # 529 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 1_1 - 176 DUF87 PF01935.12 229 1.2e-05 13.9 0.0 1 1 5.7e-06 2.9e-05 12.6 0.0 9 43 126 160 121 172 0.75 # 2 # 529 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 1_1 - 176 NB-ARC PF00931.17 287 2.6e-05 11.8 0.0 1 2 0.039 0.19 -0.9 0.0 241 259 35 53 14 70 0.77 # 2 # 529 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 1_1 - 176 NB-ARC PF00931.17 287 2.6e-05 11.8 0.0 2 2 1.8e-05 9.1e-05 10.0 0.0 17 40 138 161 131 168 0.83 # 2 # 529 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 1_1 - 176 AAA_22 PF13401.1 131 1.4e-07 20.4 0.0 1 1 5e-08 2.5e-07 19.6 0.0 5 30 141 166 137 173 0.84 # 2 # 529 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 1_1 - 176 AAA_17 PF13207.1 121 1.6e-06 17.7 0.0 1 1 1.2e-06 5.8e-06 15.9 0.0 3 17 144 158 143 165 0.90 # 2 # 529 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 1_1 - 176 T2SE PF00437.15 272 2.7e-05 11.8 0.0 1 1 6.2e-06 3.1e-05 11.6 0.0 120 151 132 164 85 174 0.83 # 2 # 529 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 1_1 - 176 SMC_N PF02463.14 220 3.6e-05 11.7 0.0 1 1 1.2e-05 6e-05 11.0 0.0 25 46 141 161 132 169 0.87 # 2 # 529 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 1_1 - 176 Arch_ATPase PF01637.13 234 2.7e-05 12.6 0.0 1 1 1.1e-05 5.4e-05 11.6 0.0 23 53 143 173 141 175 0.77 # 2 # 529 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 1_1 - 176 AAA_16 PF13191.1 185 2.1e-06 16.5 0.0 1 1 6.5e-07 3.3e-06 15.9 0.0 25 50 141 166 130 174 0.84 # 2 # 529 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 1_1 - 176 AAA_23 PF13476.1 202 1.4e-07 20.7 0.0 1 1 8.6e-08 4.3e-07 19.1 0.0 20 42 141 163 129 168 0.87 # 2 # 529 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 1_1 - 176 AAA_18 PF13238.1 129 2.4e-05 13.4 0.0 1 1 9.3e-06 4.6e-05 12.4 0.0 2 15 144 157 144 163 0.88 # 2 # 529 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 1_1 - 176 AAA_29 PF13555.1 62 4.5e-08 21.3 0.0 1 1 1.6e-08 7.9e-08 20.5 0.0 22 41 140 158 129 172 0.80 # 2 # 529 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 1_1 - 176 MMR_HSR1 PF01926.18 116 2.4e-05 13.0 0.0 1 1 9.7e-06 4.9e-05 12.0 0.0 3 20 144 161 142 174 0.80 # 2 # 529 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 1_1 - 176 AAA_33 PF13671.1 143 6.3e-06 14.8 0.0 1 1 2.1e-06 1.1e-05 14.1 0.0 3 20 144 161 143 168 0.85 # 2 # 529 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 1_1 - 176 AAA_30 PF13604.1 196 7e-05 11.1 0.0 1 1 1.9e-05 9.4e-05 10.7 0.0 21 45 143 167 134 175 0.81 # 2 # 529 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 1_1 - 176 FtsK_SpoIIIE PF01580.13 205 1.7e-07 19.5 0.0 1 1 4.8e-08 2.4e-07 19.1 0.0 33 60 133 162 112 170 0.78 # 2 # 529 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 1_1 - 176 ABC_tran PF00005.22 137 9.1e-07 18.0 0.0 1 1 3.9e-07 2e-06 16.9 0.0 4 31 133 160 131 170 0.86 # 2 # 529 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 1_1 - 176 RuvB_N PF05496.7 234 1.4e-05 12.8 0.0 1 1 4.1e-06 2e-05 12.3 0.0 49 69 139 160 134 170 0.83 # 2 # 529 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 1_1 - 176 AAA_19 PF13245.1 76 2.7e-06 15.8 0.0 1 1 9e-07 4.5e-06 15.1 0.0 14 33 144 163 135 172 0.83 # 2 # 529 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 1_1 - 176 AAA_10 PF12846.2 304 5.1e-09 24.6 0.0 1 1 1.5e-09 7.3e-09 24.0 0.0 2 27 141 166 140 175 0.86 # 2 # 529 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 1_1 - 176 AAA_11 PF13086.1 236 9.4e-06 14.0 0.0 1 1 2.9e-06 1.4e-05 13.4 0.0 17 41 140 164 127 173 0.82 # 2 # 529 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 1_1 - 176 RNA_helicase PF00910.17 107 5e-05 12.2 0.0 1 1 2.1e-05 0.00011 11.1 0.0 2 23 144 165 143 174 0.80 # 2 # 529 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 1_1 - 176 AAA_24 PF13479.1 213 1.8e-05 13.1 0.0 1 1 6.3e-06 3.1e-05 12.2 0.0 6 22 143 159 142 163 0.90 # 2 # 529 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 1_1 - 176 NACHT PF05729.7 166 3.2e-07 18.8 0.0 1 1 1e-07 5.2e-07 18.1 0.0 4 26 144 166 142 174 0.90 # 2 # 529 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 1_1 - 176 AAA_25 PF13481.1 194 1.3e-07 19.8 0.0 1 1 4.9e-08 2.5e-07 18.9 0.0 33 57 141 164 109 168 0.79 # 2 # 529 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/66415c8b-4c4d-4a95-9179-9fc2f60e4ca4 # Target file: checkm_output/bins/pAJ489618.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pAJ489618.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/66415c8b-4c4d-4a95-9179-9fc2f60e4ca4 checkm_output/bins/pAJ489618.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:35:43 2020 # [ok]