# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_16 - 849 UPF0020 PF01170.13 180 2.3e-10 31.6 0.0 1 1 1.5e-11 4.6e-10 30.6 0.0 20 123 328 427 320 440 0.77 # 15276 # 17822 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.467 1_12 - 200 MipZ PF09140.6 261 8.8e-09 26.0 0.9 1 2 7.5e-08 2.3e-06 18.0 0.3 2 41 3 42 2 57 0.88 # 11839 # 12438 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.575 1_12 - 200 MipZ PF09140.6 261 8.8e-09 26.0 0.9 2 2 0.00031 0.0096 6.2 0.0 94 143 74 124 63 141 0.82 # 11839 # 12438 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.575 1_16 - 849 Methyltransf_18 PF12847.2 112 0.00016 13.5 0.0 1 1 1.8e-05 0.00055 11.8 0.0 3 108 338 480 337 484 0.54 # 15276 # 17822 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.467 1_2 - 1165 UvrD_C_2 PF13538.1 104 3.7e-06 18.4 0.1 1 1 4.3e-07 1.3e-05 16.6 0.1 3 103 714 821 712 822 0.73 # 197 # 3691 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.558 1_2 - 1165 AAA_22 PF13401.1 131 1.2e-06 20.0 2.4 1 2 2.3e-07 7.1e-06 17.5 0.0 7 125 467 580 461 584 0.64 # 197 # 3691 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.558 1_2 - 1165 AAA_22 PF13401.1 131 1.2e-06 20.0 2.4 2 2 0.093 2.9 -0.7 0.0 51 99 650 704 606 722 0.63 # 197 # 3691 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.558 1_12 - 200 Methyltransf_24 PF13578.1 106 3.6e-05 15.9 0.0 1 1 2.3e-06 7.2e-05 14.9 0.0 7 86 15 95 11 106 0.75 # 11839 # 12438 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.575 1_12 - 200 VirC1 PF07015.6 231 4.3e-16 49.9 0.3 1 1 3.5e-17 1.1e-15 48.6 0.3 1 124 1 119 1 127 0.84 # 11839 # 12438 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.575 1_2 - 1165 AAA_16 PF13191.1 185 0.011 7.0 14.9 1 1 4.6e-06 0.00014 13.1 2.1 15 86 455 535 445 706 0.81 # 197 # 3691 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.558 1_12 - 200 CbiA PF01656.18 195 1.9e-22 70.9 0.6 1 1 1.7e-23 5.2e-22 69.4 0.6 2 193 5 169 4 171 0.75 # 11839 # 12438 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.575 1_16 - 849 N6_Mtase PF02384.11 311 2.1e-33 106.9 0.0 1 1 1.3e-34 3.9e-33 106.0 0.0 20 236 310 537 298 610 0.84 # 15276 # 17822 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.467 1_12 - 200 AAA_31 PF13614.1 157 0.00024 12.3 0.1 1 2 0.00014 0.0043 8.2 0.1 8 41 9 42 2 48 0.86 # 11839 # 12438 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.575 1_12 - 200 AAA_31 PF13614.1 157 0.00024 12.3 0.1 2 2 0.012 0.37 2.0 0.0 120 154 81 114 62 117 0.76 # 11839 # 12438 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.575 1_16 - 849 Methyltransf_26 PF13659.1 117 5.7e-17 53.1 0.0 1 1 8.3e-18 2.6e-16 51.0 0.0 2 116 338 484 337 485 0.82 # 15276 # 17822 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.467 1_2 - 1165 AAA_30 PF13604.1 196 3e-59 191.1 8.1 1 1 9.7e-61 3e-59 191.1 8.1 1 195 447 649 447 650 0.96 # 197 # 3691 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.558 1_2 - 1165 AAA_19 PF13245.1 76 7.1e-09 26.7 1.4 1 3 2.3e-10 7.1e-09 26.7 1.4 13 74 467 522 454 524 0.73 # 197 # 3691 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.558 1_2 - 1165 AAA_19 PF13245.1 76 7.1e-09 26.7 1.4 2 3 0.003 0.092 3.9 0.1 36 63 662 694 631 705 0.71 # 197 # 3691 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.558 1_2 - 1165 AAA_19 PF13245.1 76 7.1e-09 26.7 1.4 3 3 0.078 2.4 -0.7 0.1 35 69 822 858 782 871 0.70 # 197 # 3691 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.558 1_2 - 1165 AAA_11 PF13086.1 236 5.9e-09 27.0 15.1 1 2 3.7e-05 0.0012 9.7 0.0 2 90 448 525 447 543 0.81 # 197 # 3691 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.558 1_2 - 1165 AAA_11 PF13086.1 236 5.9e-09 27.0 15.1 2 2 5e-09 1.5e-07 22.4 0.1 195 231 546 585 534 587 0.88 # 197 # 3691 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.558 1_2 - 1165 PIF1 PF05970.9 364 2.1e-06 18.1 0.1 1 1 1.2e-07 3.6e-06 17.3 0.1 1 115 447 556 447 566 0.85 # 197 # 3691 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.558 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/a8bbf5ed-224e-48b9-a532-94a705ef932f # Target file: checkm_output/bins/pAJ420072.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pAJ420072.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/a8bbf5ed-224e-48b9-a532-94a705ef932f checkm_output/bins/pAJ420072.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:35:43 2020 # [ok]