# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 182 AAA_22 PF13401.1 131 4.7e-08 23.4 0.1 1 1 3.5e-06 4.9e-05 13.7 0.1 6 122 2 110 1 120 0.47 # 857 # 1402 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.449 1_2 - 182 PhoH PF02562.11 205 8.6e-05 11.9 0.0 1 2 0.0023 0.032 3.5 0.0 21 46 2 27 1 63 0.79 # 857 # 1402 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.449 1_2 - 182 PhoH PF02562.11 205 8.6e-05 11.9 0.0 2 2 0.00028 0.0039 6.5 0.0 120 131 69 80 67 86 0.85 # 857 # 1402 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.449 1_2 - 182 T2SE PF00437.15 272 3.5e-05 12.9 0.1 1 1 3.4e-06 4.7e-05 12.4 0.1 131 172 3 46 1 53 0.87 # 857 # 1402 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.449 1_2 - 182 AAA_16 PF13191.1 185 3.1e-05 14.2 0.0 1 1 7.1e-06 0.0001 12.5 0.0 27 56 3 36 1 43 0.79 # 857 # 1402 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.449 1_2 - 182 AAA_18 PF13238.1 129 8.4e-05 13.1 0.0 1 1 1.2e-05 0.00017 12.1 0.0 2 34 4 43 4 84 0.58 # 857 # 1402 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.449 1_2 - 182 KaiC PF06745.8 227 8.9e-05 11.8 0.2 1 1 1.1e-05 0.00015 11.0 0.2 21 41 2 22 1 79 0.79 # 857 # 1402 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.449 1_2 - 182 AAA_14 PF13173.1 128 3.9e-07 20.2 0.0 1 1 4.2e-08 5.8e-07 19.6 0.0 4 122 2 136 1 138 0.67 # 857 # 1402 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.449 1_2 - 182 AAA PF00004.24 132 4e-08 23.7 0.0 1 1 4.1e-09 5.7e-08 23.2 0.0 2 126 4 127 3 133 0.72 # 857 # 1402 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.449 1_2 - 182 AAA_19 PF13245.1 76 1.5e-05 14.9 0.0 1 1 1.7e-06 2.4e-05 14.3 0.0 12 32 2 19 1 34 0.78 # 857 # 1402 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.449 1_2 - 182 AAA_10 PF12846.2 304 6.3e-05 12.6 0.0 1 2 0.0018 0.025 4.1 0.0 4 17 3 16 2 32 0.89 # 857 # 1402 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.449 1_2 - 182 AAA_10 PF12846.2 304 6.3e-05 12.6 0.0 2 2 0.00032 0.0044 6.5 0.0 219 268 67 119 53 127 0.82 # 857 # 1402 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.449 1_2 - 182 Zot PF05707.7 193 2.6e-54 173.7 0.0 1 1 2.5e-55 3.5e-54 173.3 0.0 1 190 1 177 1 179 0.96 # 857 # 1402 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.449 1_2 - 182 Viral_helicase1 PF01443.13 234 7.6e-06 15.7 0.0 1 1 7.8e-07 1.1e-05 15.1 0.0 1 73 3 79 3 83 0.65 # 857 # 1402 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.449 1_2 - 182 DUF2075 PF09848.4 352 1.2e-07 21.1 0.0 1 1 2.9e-08 4.1e-07 19.3 0.0 3 95 2 80 1 119 0.77 # 857 # 1402 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.449 1_2 - 182 AAA_11 PF13086.1 236 5.5e-05 12.9 0.6 1 2 5e-05 0.0007 9.3 0.0 19 42 2 26 1 68 0.81 # 857 # 1402 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.449 1_2 - 182 AAA_11 PF13086.1 236 5.5e-05 12.9 0.6 2 2 0.0075 0.11 2.2 0.1 194 203 70 79 62 85 0.78 # 857 # 1402 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.449 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/db653340-ad6a-4a0d-b47a-f2c3b5dd4673 # Target file: checkm_output/bins/pAJ277475.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pAJ277475.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/db653340-ad6a-4a0d-b47a-f2c3b5dd4673 checkm_output/bins/pAJ277475.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:35:40 2020 # [ok]