# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_13 - 285 RrnaAD PF00398.15 262 8.1e-72 231.6 0.0 1 1 6.2e-73 1e-71 231.3 0.0 3 259 6 254 4 256 0.96 # 12316 # 13170 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_8 - 1117 Seryl_tRNA_N PF02403.17 108 0.05 4.0 9.8 1 2 0.00019 0.003 7.9 0.4 29 81 945 997 924 999 0.89 # 5211 # 8561 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_8 - 1117 Seryl_tRNA_N PF02403.17 108 0.05 4.0 9.8 2 2 0.02 0.32 1.4 0.1 35 53 1040 1058 1005 1067 0.69 # 5211 # 8561 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_6 - 197 MipZ PF09140.6 261 2.1e-10 30.4 1.3 1 1 1.9e-10 3.1e-09 26.5 1.3 2 115 2 117 1 119 0.66 # 4081 # 4671 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_13 - 285 Methyltransf_18 PF12847.2 112 9e-06 16.6 0.0 1 1 8.7e-07 1.4e-05 16.0 0.0 3 69 35 95 33 180 0.73 # 12316 # 13170 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_8 - 1117 UvrD_C_2 PF13538.1 104 7e-06 16.6 0.6 1 1 1.4e-06 2.3e-05 14.9 0.0 6 102 715 818 711 820 0.67 # 5211 # 8561 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_8 - 1117 AAA_22 PF13401.1 131 2.1e-05 15.0 1.5 1 2 0.031 0.5 0.9 0.0 36 98 325 421 307 432 0.71 # 5211 # 8561 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_8 - 1117 AAA_22 PF13401.1 131 2.1e-05 15.0 1.5 2 2 3.5e-05 0.00057 10.4 0.0 8 126 466 579 460 584 0.73 # 5211 # 8561 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_13 - 285 Methyltransf_11 PF08241.7 95 9.4e-05 13.3 0.0 1 1 1e-05 0.00016 12.5 0.0 2 57 38 92 37 103 0.89 # 12316 # 13170 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_6 - 197 SRP54 PF00448.17 196 0.00011 12.0 0.6 1 1 1.2e-05 0.00019 11.2 0.6 11 39 11 39 3 45 0.89 # 4081 # 4671 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_6 - 197 ArsA_ATPase PF02374.10 305 1.5e-05 14.4 0.6 1 1 1.3e-06 2e-05 14.0 0.6 6 38 6 38 1 42 0.87 # 4081 # 4671 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_8 - 1117 PhoH PF02562.11 205 4.4e-06 16.3 0.0 1 2 0.004 0.064 2.7 0.0 7 33 448 476 444 501 0.80 # 5211 # 8561 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_8 - 1117 PhoH PF02562.11 205 4.4e-06 16.3 0.0 2 2 1.5e-05 0.00025 10.6 0.0 120 171 542 593 540 611 0.81 # 5211 # 8561 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_6 - 197 VirC1 PF07015.6 231 2.3e-10 30.2 0.0 1 1 2.3e-11 3.7e-10 29.5 0.0 3 120 2 115 1 167 0.89 # 4081 # 4671 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_6 - 197 Fer4_NifH PF00142.13 273 1.3e-05 14.8 0.1 1 1 1.1e-06 1.8e-05 14.3 0.1 3 36 4 37 2 43 0.89 # 4081 # 4671 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_6 - 197 CbiA PF01656.18 195 1.8e-18 56.9 0.1 1 1 2e-19 3.2e-18 56.1 0.1 1 188 3 164 3 171 0.68 # 4081 # 4671 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_13 - 285 Methyltransf_25 PF13649.1 101 3.2e-06 17.8 0.0 1 1 3.7e-07 5.9e-06 17.0 0.0 1 92 36 117 36 119 0.86 # 12316 # 13170 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_6 - 197 AAA_31 PF13614.1 157 2.7e-06 17.7 0.0 1 2 9.9e-07 1.6e-05 15.2 0.0 3 44 3 44 1 55 0.85 # 4081 # 4671 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_6 - 197 AAA_31 PF13614.1 157 2.7e-06 17.7 0.0 2 2 0.043 0.69 0.1 0.0 120 154 81 114 79 117 0.76 # 4081 # 4671 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_13 - 285 Methyltransf_26 PF13659.1 117 1.1e-09 28.7 0.1 1 1 1.1e-10 1.7e-09 28.1 0.1 4 90 36 111 33 149 0.79 # 12316 # 13170 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_8 - 1117 AAA_30 PF13604.1 196 5.4e-58 186.1 3.0 1 2 3.4e-59 5.4e-58 186.1 3.0 2 195 446 647 445 648 0.97 # 5211 # 8561 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_8 - 1117 AAA_30 PF13604.1 196 5.4e-58 186.1 3.0 2 2 0.043 0.69 -0.3 0.1 56 111 972 1027 933 1037 0.69 # 5211 # 8561 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_13 - 285 MTS PF05175.9 170 2.3e-08 23.9 0.0 1 1 2.2e-09 3.5e-08 23.3 0.0 28 114 29 110 5 119 0.83 # 12316 # 13170 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_8 - 1117 AAA_19 PF13245.1 76 1.6e-09 27.9 4.2 1 2 6.1e-09 9.8e-08 22.1 0.4 13 74 465 520 452 521 0.81 # 5211 # 8561 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_8 - 1117 AAA_19 PF13245.1 76 1.6e-09 27.9 4.2 2 2 0.0015 0.024 4.8 0.1 39 62 662 686 630 707 0.75 # 5211 # 8561 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_13 - 285 NodS PF05401.6 201 0.00016 11.4 0.0 1 1 1.4e-05 0.00022 11.0 0.0 41 102 30 90 17 108 0.80 # 12316 # 13170 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_8 - 1117 AAA_11 PF13086.1 236 2.2e-11 34.0 0.8 1 3 0.00038 0.0061 6.4 0.0 2 75 446 512 445 537 0.86 # 5211 # 8561 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_8 - 1117 AAA_11 PF13086.1 236 2.2e-11 34.0 0.8 2 3 2e-09 3.2e-08 23.7 0.0 195 231 544 583 540 586 0.90 # 5211 # 8561 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_8 - 1117 AAA_11 PF13086.1 236 2.2e-11 34.0 0.8 3 3 0.097 1.6 -1.5 0.3 87 95 974 982 911 1073 0.46 # 5211 # 8561 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_13 - 285 TIGR00755 TIGR00755 256 1.9e-47 151.7 0.0 1 1 1.4e-48 2.2e-47 151.4 0.0 4 254 8 253 6 255 0.95 # 12316 # 13170 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_8 - 1117 PIF1 PF05970.9 364 3.8e-05 13.0 0.0 1 1 4.2e-06 6.8e-05 12.2 0.0 27 116 467 555 445 599 0.82 # 5211 # 8561 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_13 - 285 Methyltransf_23 PF13489.1 161 4.3e-06 16.8 0.0 1 1 4.3e-07 6.8e-06 16.2 0.0 20 60 30 82 9 122 0.79 # 12316 # 13170 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_6 - 197 AAA_25 PF13481.1 194 6.2e-05 12.8 0.0 1 1 6.7e-06 0.00011 12.0 0.0 36 65 4 34 2 104 0.83 # 4081 # 4671 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/9dcfab11-8abd-409d-a82f-cf928ee282a8 # Target file: checkm_output/bins/pAF492560.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pAF492560.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/9dcfab11-8abd-409d-a82f-cf928ee282a8 checkm_output/bins/pAF492560.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:35:37 2020 # [ok]