# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_5 - 195 MipZ PF09140.6 261 3.5e-10 30.0 2.3 1 2 1.9e-08 3.7e-07 20.0 0.2 5 47 5 46 1 78 0.81 # 1596 # 2180 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.593 1_5 - 195 MipZ PF09140.6 261 3.5e-10 30.0 2.3 2 2 1.8e-05 0.00035 10.3 0.2 100 137 78 115 62 126 0.85 # 1596 # 2180 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.593 1_5 - 195 ArsA_ATPase PF02374.10 305 8.2e-09 25.5 0.0 1 1 5.9e-10 1.2e-08 24.9 0.0 1 43 1 43 1 53 0.92 # 1596 # 2180 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.593 1_5 - 195 Methyltransf_24 PF13578.1 106 0.00015 13.3 0.0 1 1 1.3e-05 0.00026 12.5 0.0 7 79 14 86 10 132 0.66 # 1596 # 2180 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.593 1_5 - 195 VirC1 PF07015.6 231 3.1e-12 36.6 0.1 1 1 4.3e-13 8.6e-12 35.2 0.1 4 129 3 122 1 125 0.85 # 1596 # 2180 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.593 1_5 - 195 Fer4_NifH PF00142.13 273 4.3e-05 13.4 0.0 1 1 4.7e-06 9.4e-05 12.3 0.0 5 43 6 44 2 51 0.89 # 1596 # 2180 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.593 1_5 - 195 CbiA PF01656.18 195 1.5e-20 64.0 0.0 1 1 1.4e-21 2.8e-20 63.1 0.0 2 181 4 156 3 169 0.76 # 1596 # 2180 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.593 1_5 - 195 AAA_31 PF13614.1 157 4.8e-06 17.2 0.0 1 2 8.6e-06 0.00017 12.2 0.0 8 42 8 42 2 55 0.87 # 1596 # 2180 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.593 1_5 - 195 AAA_31 PF13614.1 157 4.8e-06 17.2 0.0 2 2 0.0051 0.1 3.2 0.0 120 155 79 113 66 115 0.87 # 1596 # 2180 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.593 1_11 - 165 RRM_6 PF14259.1 70 4.2e-05 14.2 0.1 1 1 4.1e-06 8.2e-05 13.3 0.1 15 60 45 82 37 89 0.81 # 6625 # 7119 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.552 1_5 - 195 AAA_10 PF12846.2 304 3.3e-05 14.0 0.0 1 1 2.2e-06 4.4e-05 13.6 0.0 11 58 11 69 4 124 0.79 # 1596 # 2180 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.593 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/4560a397-a636-4d8b-bca4-41d0c35b7779 # Target file: checkm_output/bins/pAF486522.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pAF486522.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/4560a397-a636-4d8b-bca4-41d0c35b7779 checkm_output/bins/pAF486522.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:35:37 2020 # [ok]