# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_3 - 260 Mg_chelatase PF01078.16 207 2.8e-05 12.5 0.1 1 1 7.5e-06 5.2e-05 11.6 0.1 7 51 18 61 14 148 0.78 # 1808 # 2587 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.571 1_3 - 260 DUF87 PF01935.12 229 1.8e-06 17.0 0.0 1 2 3.9e-06 2.7e-05 13.2 0.0 13 49 25 58 15 74 0.81 # 1808 # 2587 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.571 1_3 - 260 DUF87 PF01935.12 229 1.8e-06 17.0 0.0 2 2 0.01 0.073 2.0 0.0 153 184 129 166 76 185 0.67 # 1808 # 2587 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.571 1_3 - 260 AAA_22 PF13401.1 131 1.9e-08 23.7 0.0 1 1 4.3e-09 3e-08 23.1 0.0 4 121 32 172 27 181 0.66 # 1808 # 2587 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.571 1_3 - 260 AAA_16 PF13191.1 185 2.4e-06 16.7 0.4 1 1 6.8e-07 4.8e-06 15.8 0.4 24 131 32 142 27 182 0.59 # 1808 # 2587 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.571 1_3 - 260 AAA_29 PF13555.1 62 2.3e-06 16.3 0.0 1 1 5.9e-07 4.2e-06 15.5 0.0 15 48 24 57 18 66 0.87 # 1808 # 2587 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.571 1_3 - 260 AAA PF00004.24 132 5.4e-07 19.1 0.0 1 1 1.4e-07 1e-06 18.2 0.0 2 124 36 188 35 196 0.65 # 1808 # 2587 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.571 1_3 - 260 FtsK_SpoIIIE PF01580.13 205 2.3e-14 42.5 0.0 1 1 1.6e-14 1.1e-13 40.2 0.0 20 203 15 177 5 179 0.85 # 1808 # 2587 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.571 1_3 - 260 AAA_19 PF13245.1 76 3.9e-05 12.6 0.0 1 1 1.1e-05 7.4e-05 11.7 0.0 5 37 28 59 24 112 0.86 # 1808 # 2587 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.571 1_3 - 260 AAA_10 PF12846.2 304 1e-09 27.3 0.4 1 2 0.00037 0.0026 6.3 0.2 2 24 33 55 32 62 0.85 # 1808 # 2587 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.571 1_3 - 260 AAA_10 PF12846.2 304 1e-09 27.3 0.4 2 2 4.3e-08 3e-07 19.2 0.0 217 290 122 199 83 208 0.76 # 1808 # 2587 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.571 1_3 - 260 TrwB_AAD_bind PF10412.4 386 5.7e-05 10.9 0.0 1 2 8.6e-05 0.0006 7.5 0.0 14 39 31 56 22 62 0.84 # 1808 # 2587 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.571 1_3 - 260 TrwB_AAD_bind PF10412.4 386 5.7e-05 10.9 0.0 2 2 0.0095 0.067 0.8 0.0 256 281 151 176 148 179 0.91 # 1808 # 2587 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.571 1_2 - 342 RNA_helicase PF00910.17 107 4.7e-06 16.0 0.0 1 1 1.2e-06 8.5e-06 15.1 0.0 2 60 186 234 185 257 0.90 # 669 # 1694 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.526 1_3 - 260 AAA_25 PF13481.1 194 9.1e-07 17.6 0.5 1 1 9.4e-07 6.6e-06 14.8 0.5 28 177 27 161 9 171 0.66 # 1808 # 2587 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.571 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/1f67ecbd-4782-47f5-869f-163c7f578149 # Target file: checkm_output/bins/pAF359574.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pAF359574.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/1f67ecbd-4782-47f5-869f-163c7f578149 checkm_output/bins/pAF359574.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:35:32 2020 # [ok]