# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 532 UPF0020 PF01170.13 180 2.7e-06 17.5 0.0 1 1 3.1e-07 5.6e-06 16.5 0.0 31 120 219 306 202 314 0.77 # 1506 # 3101 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.400 1_3 - 1026 AAA_22 PF13401.1 131 0.00015 12.4 5.7 1 2 6.1e-06 0.00011 12.9 0.7 68 125 362 447 280 452 0.55 # 3101 # 6178 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.379 1_3 - 1026 AAA_22 PF13401.1 131 0.00015 12.4 5.7 2 2 0.094 1.7 -0.7 0.0 53 94 632 681 598 708 0.76 # 3101 # 6178 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.379 1_9 - 123 AAA_23 PF13476.1 202 0.0016 9.3 12.7 1 1 0.0001 0.0018 9.1 12.7 89 197 8 115 1 120 0.40 # 12857 # 13225 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.255 1_2 - 532 Methyltransf_25 PF13649.1 101 0.00014 12.8 0.0 1 2 0.00029 0.0052 7.7 0.0 2 74 221 306 220 341 0.76 # 1506 # 3101 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.400 1_2 - 532 Methyltransf_25 PF13649.1 101 0.00014 12.8 0.0 2 2 0.029 0.52 1.3 0.0 42 74 436 496 388 528 0.49 # 1506 # 3101 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.400 1_2 - 532 N6_Mtase PF02384.11 311 3.7e-122 397.7 0.0 1 1 2.8e-123 5e-122 397.2 0.0 2 310 168 476 167 477 0.98 # 1506 # 3101 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.400 1_2 - 532 Methyltransf_26 PF13659.1 117 1.3e-14 44.8 0.0 1 1 2e-15 3.6e-14 43.4 0.0 2 116 218 353 217 354 0.78 # 1506 # 3101 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.400 1_9 - 123 Ribosomal_S15 PF00312.17 83 4.4e-05 13.8 3.5 1 1 7.4e-06 0.00013 12.2 3.5 21 66 69 120 53 122 0.79 # 12857 # 13225 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.255 1_2 - 532 MTS PF05175.9 170 3.2e-05 13.8 0.0 1 1 3.6e-06 6.5e-05 12.8 0.0 55 140 243 352 211 365 0.71 # 1506 # 3101 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.400 1_2 - 532 Eco57I PF07669.6 106 1.1e-07 22.7 0.1 1 1 3.8e-08 6.8e-07 20.2 0.0 2 104 292 403 291 405 0.87 # 1506 # 3101 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.400 1_3 - 1026 AAA_10 PF12846.2 304 0.042 3.7 11.7 1 2 0.067 1.2 -1.1 0.1 10 40 291 325 285 398 0.58 # 3101 # 6178 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.379 1_3 - 1026 AAA_10 PF12846.2 304 0.042 3.7 11.7 2 2 1.2e-05 0.00022 11.2 0.2 202 240 382 430 358 435 0.77 # 3101 # 6178 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.379 1_3 - 1026 ResIII PF04851.10 184 2e-45 145.3 2.9 1 2 1.1e-46 2e-45 145.3 2.9 2 183 262 448 261 449 0.95 # 3101 # 6178 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.379 1_3 - 1026 ResIII PF04851.10 184 2e-45 145.3 2.9 2 2 0.098 1.8 -1.2 4.3 67 156 749 851 733 881 0.72 # 3101 # 6178 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.379 1_3 - 1026 DEAD PF00270.24 169 8.4e-13 38.6 0.6 1 1 4.7e-14 8.4e-13 38.6 0.6 3 162 267 447 265 454 0.70 # 3101 # 6178 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.379 1_9 - 123 AAA_32 PF13654.1 509 2.6e-05 13.4 4.3 1 1 1.7e-06 3e-05 13.2 4.3 137 242 18 119 2 121 0.87 # 12857 # 13225 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.255 1_3 - 1026 SNF2_N PF00176.18 299 9.3e-11 31.4 0.4 1 2 5.1e-12 9.3e-11 31.4 0.4 2 174 268 449 204 458 0.78 # 3101 # 6178 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.379 1_3 - 1026 SNF2_N PF00176.18 299 9.3e-11 31.4 0.4 2 2 0.055 0.99 -1.5 1.2 135 146 842 853 763 1014 0.67 # 3101 # 6178 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.379 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/2c2f2794-4ac3-42c5-8df9-d940c3fcd3a8 # Target file: checkm_output/bins/pAF243383.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pAF243383.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/2c2f2794-4ac3-42c5-8df9-d940c3fcd3a8 checkm_output/bins/pAF243383.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:35:30 2020 # [ok]