# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_13 - 228 ubiquitin PF00240.18 69 1.2e-05 15.0 4.4 1 1 1.6e-06 2.3e-05 14.0 2.7 15 55 126 161 111 170 0.82 # 7818 # 8501 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.314 1_9 - 208 AAA_22 PF13401.1 131 2.3e-05 14.8 0.5 1 1 4.4e-06 6.5e-05 13.3 0.5 4 26 27 49 24 200 0.85 # 5501 # 6124 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.280 1_9 - 208 AAA_15 PF13175.1 415 3.9e-11 32.7 13.6 1 2 6.2e-06 9.2e-05 11.7 11.1 19 128 15 129 2 140 0.71 # 5501 # 6124 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.280 1_9 - 208 AAA_15 PF13175.1 415 3.9e-11 32.7 13.6 2 2 5.6e-09 8.4e-08 21.7 0.0 371 414 153 197 133 198 0.89 # 5501 # 6124 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.280 1_9 - 208 AAA_17 PF13207.1 121 3.4e-07 21.4 0.2 1 1 3.5e-08 5.3e-07 20.8 0.2 3 63 31 95 30 190 0.65 # 5501 # 6124 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.280 1_9 - 208 AAA_21 PF13304.1 303 5.9e-18 56.0 5.6 1 1 3.4e-16 5.1e-15 46.3 5.6 3 300 31 196 29 199 0.73 # 5501 # 6124 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.280 1_9 - 208 MobB PF03205.9 140 6.3e-05 13.0 0.1 1 1 9.8e-06 0.00015 11.7 0.1 4 20 31 47 28 52 0.87 # 5501 # 6124 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.280 1_9 - 208 T2SE PF00437.15 272 7.3e-05 11.9 0.0 1 1 9.4e-06 0.00014 11.0 0.0 122 148 21 47 3 66 0.72 # 5501 # 6124 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.280 1_9 - 208 Zeta_toxin PF06414.7 201 3.5e-06 16.4 0.0 1 1 3.7e-07 5.5e-06 15.8 0.0 14 55 25 67 13 81 0.82 # 5501 # 6124 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.280 1_9 - 208 SMC_N PF02463.14 220 1.5e-09 27.6 2.7 1 2 2e-05 0.0003 10.3 0.3 6 42 3 45 1 49 0.77 # 5501 # 6124 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.280 1_9 - 208 SMC_N PF02463.14 220 1.5e-09 27.6 2.7 2 2 1.3e-07 2e-06 17.4 0.1 127 209 124 205 81 207 0.74 # 5501 # 6124 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.280 1_9 - 208 Arch_ATPase PF01637.13 234 2.1e-05 14.5 0.6 1 1 3.2e-06 4.9e-05 13.3 0.6 20 169 27 197 21 204 0.57 # 5501 # 6124 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.280 1_9 - 208 AAA_16 PF13191.1 185 4.5e-05 13.7 0.1 1 1 4.3e-06 6.4e-05 13.2 0.1 26 49 29 51 14 125 0.83 # 5501 # 6124 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.280 1_9 - 208 AAA_23 PF13476.1 202 1.5e-05 15.6 7.4 1 1 7.6e-06 0.00011 12.7 7.5 3 39 3 47 2 154 0.74 # 5501 # 6124 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.280 1_9 - 208 AAA_18 PF13238.1 129 2.4e-07 21.4 1.3 1 1 2e-07 3e-06 17.8 1.3 3 42 32 94 31 205 0.74 # 5501 # 6124 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.280 1_9 - 208 AAA_13 PF13166.1 712 1.2e-06 17.3 2.7 1 2 0.00016 0.0025 6.4 0.5 9 43 21 54 13 128 0.73 # 5501 # 6124 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.280 1_9 - 208 AAA_13 PF13166.1 712 1.2e-06 17.3 2.7 2 2 5.1e-06 7.7e-05 11.4 0.1 525 579 151 203 125 206 0.90 # 5501 # 6124 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.280 1_9 - 208 AAA_29 PF13555.1 62 3.1e-07 20.2 0.0 1 1 4.3e-08 6.4e-07 19.2 0.0 16 41 21 45 11 57 0.77 # 5501 # 6124 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.280 1_9 - 208 DUF258 PF03193.11 161 3e-07 20.0 0.0 1 1 3.1e-08 4.7e-07 19.3 0.0 17 55 8 47 1 72 0.84 # 5501 # 6124 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.280 1_9 - 208 AAA_33 PF13671.1 143 8.4e-05 12.7 0.0 1 1 8.1e-06 0.00012 12.2 0.0 4 33 32 65 30 122 0.78 # 5501 # 6124 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.280 1_9 - 208 ABC_tran PF00005.22 137 3.2e-34 108.4 0.0 1 1 2.7e-35 4e-34 108.1 0.0 1 136 17 163 17 164 0.92 # 5501 # 6124 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.280 1_9 - 208 AAA_19 PF13245.1 76 2.4e-05 14.4 0.0 1 1 3.2e-06 4.8e-05 13.4 0.0 13 35 30 51 23 64 0.81 # 5501 # 6124 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.280 1_9 - 208 AAA_10 PF12846.2 304 6.2e-06 16.0 0.0 1 1 1e-06 1.5e-05 14.7 0.0 1 34 27 60 27 63 0.81 # 5501 # 6124 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.280 1_9 - 208 SbcCD_C PF13558.1 90 2.7e-05 14.3 0.0 1 1 3.2e-05 0.00048 10.3 0.0 26 88 129 178 111 180 0.80 # 5501 # 6124 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.280 1_8 - 649 GidB PF02527.10 184 1.3e-05 14.6 0.1 1 2 2.4e-05 0.00036 9.9 0.1 114 179 10 76 2 82 0.84 # 3553 # 5499 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.276 1_8 - 649 GidB PF02527.10 184 1.3e-05 14.6 0.1 2 2 0.0064 0.097 2.0 0.0 86 130 386 432 385 443 0.82 # 3553 # 5499 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.276 1_9 - 208 NACHT PF05729.7 166 4.8e-05 13.3 0.1 1 1 7.4e-06 0.00011 12.1 0.1 4 19 31 46 28 55 0.88 # 5501 # 6124 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.280 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/3186d822-23f4-466a-9052-df9ccd526c98 # Target file: checkm_output/bins/pAF242367.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pAF242367.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/3186d822-23f4-466a-9052-df9ccd526c98 checkm_output/bins/pAF242367.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:35:30 2020 # [ok]