# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_25 - 193 MipZ PF09140.6 261 6.6e-12 36.2 2.4 1 2 1.6e-10 4.7e-09 26.8 0.2 2 40 2 40 1 56 0.88 # 20511 # 21089 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.491 1_25 - 193 MipZ PF09140.6 261 6.6e-12 36.2 2.4 2 2 3.1e-05 0.00093 9.5 0.2 95 136 72 113 58 125 0.85 # 20511 # 21089 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.491 1_25 - 193 YhjQ PF06564.7 244 2.9e-05 14.7 0.0 1 2 8.4e-06 0.00025 11.6 0.1 8 41 7 40 1 42 0.89 # 20511 # 21089 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.491 1_25 - 193 YhjQ PF06564.7 244 2.9e-05 14.7 0.0 2 2 0.014 0.43 1.0 0.0 115 149 73 107 51 134 0.82 # 20511 # 21089 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.491 1_30 - 716 UvrD_C_2 PF13538.1 104 2.3e-15 47.9 0.1 1 1 4.7e-16 7e-15 46.3 0.1 2 104 519 620 518 620 0.82 # 27209 # 29356 # -1 # ID=1_30;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_26 - 1161 UvrD_C_2 PF13538.1 104 7.9e-06 17.2 0.1 1 1 2.1e-06 3.2e-05 15.3 0.1 3 103 714 821 712 822 0.73 # 21535 # 25017 # -1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.564 1_26 - 1161 AAA_22 PF13401.1 131 1.5e-06 19.6 0.5 1 1 1.2e-06 1.8e-05 16.2 0.1 7 125 467 580 461 584 0.61 # 21535 # 25017 # -1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.564 1_30 - 716 AAA_22 PF13401.1 131 5.3e-05 14.6 0.0 1 1 3e-05 0.00045 11.6 0.0 11 106 214 353 211 376 0.78 # 27209 # 29356 # -1 # ID=1_30;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_25 - 193 ATP_bind_1 PF03029.12 238 2.8e-05 14.9 0.0 1 1 2.3e-06 7e-05 13.6 0.0 6 37 11 42 8 56 0.90 # 20511 # 21089 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.491 1_25 - 193 SRP54 PF00448.17 196 1e-05 16.2 0.2 1 1 8.1e-07 2.4e-05 15.0 0.1 10 38 10 38 1 44 0.87 # 20511 # 21089 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.491 1_25 - 193 MobB PF03205.9 140 0.00017 12.5 0.1 1 1 1.2e-05 0.00036 11.5 0.1 7 39 8 39 1 45 0.79 # 20511 # 21089 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.491 1_25 - 193 LpxK PF02606.9 326 0.00018 11.7 0.0 1 1 7.5e-06 0.00022 11.4 0.0 45 71 9 35 1 53 0.89 # 20511 # 21089 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.491 1_25 - 193 ArsA_ATPase PF02374.10 305 1e-09 29.0 0.0 1 1 4.7e-11 1.4e-09 28.5 0.0 6 49 6 49 1 85 0.88 # 20511 # 21089 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.491 1_26 - 1161 PhoH PF02562.11 205 2.2e-05 14.9 0.1 1 2 0.00039 0.012 6.0 0.1 6 40 449 484 446 529 0.72 # 21535 # 25017 # -1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.564 1_26 - 1161 PhoH PF02562.11 205 2.2e-05 14.9 0.1 2 2 0.00042 0.013 5.9 0.0 120 167 544 591 539 618 0.80 # 21535 # 25017 # -1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.564 1_25 - 193 VirC1 PF07015.6 231 6.6e-10 29.6 0.1 1 1 8.3e-11 2.5e-09 27.7 0.1 4 120 3 112 1 124 0.82 # 20511 # 21089 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.491 1_25 - 193 Fer4_NifH PF00142.13 273 5.1e-07 20.3 0.0 1 1 2.6e-08 7.8e-07 19.7 0.0 5 40 6 41 2 51 0.91 # 20511 # 21089 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.491 1_30 - 716 AAA_16 PF13191.1 185 2.1e-05 15.8 1.7 1 2 0.013 0.19 2.9 0.1 85 107 75 101 3 167 0.56 # 27209 # 29356 # -1 # ID=1_30;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_30 - 716 AAA_16 PF13191.1 185 2.1e-05 15.8 1.7 2 2 6.7e-05 0.001 10.3 0.0 29 172 212 357 193 389 0.68 # 27209 # 29356 # -1 # ID=1_30;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_26 - 1161 AAA_16 PF13191.1 185 0.053 4.7 14.7 1 1 9.3e-06 0.00014 13.1 1.1 15 85 455 534 450 707 0.81 # 21535 # 25017 # -1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.564 1_5 - 137 AAA_13 PF13166.1 712 8.5e-05 12.3 0.0 1 1 3.5e-06 0.00011 12.0 0.0 634 688 17 72 4 92 0.75 # 5412 # 5822 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 1_25 - 193 CbiA PF01656.18 195 5.5e-25 79.1 0.1 1 1 2.9e-26 8.6e-25 78.5 0.1 1 174 3 149 3 168 0.75 # 20511 # 21089 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.491 1_30 - 716 UvrD_C PF13361.1 351 5.4e-09 27.1 0.4 1 2 1.5e-07 4.4e-06 17.5 0.1 27 111 470 558 454 566 0.82 # 27209 # 29356 # -1 # ID=1_30;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_30 - 716 UvrD_C PF13361.1 351 5.4e-09 27.1 0.4 2 2 0.00016 0.0048 7.5 0.0 286 342 567 615 559 623 0.86 # 27209 # 29356 # -1 # ID=1_30;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_25 - 193 AAA_31 PF13614.1 157 3.6e-12 37.7 0.0 1 2 6.3e-11 1.9e-09 28.9 0.0 2 42 2 42 1 49 0.93 # 20511 # 21089 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.491 1_25 - 193 AAA_31 PF13614.1 157 3.6e-12 37.7 0.0 2 2 0.00039 0.012 6.8 0.0 117 155 75 112 63 114 0.85 # 20511 # 21089 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.491 1_26 - 1161 AAA_30 PF13604.1 196 2e-58 188.4 6.4 1 1 1.3e-59 2e-58 188.4 6.4 1 195 447 649 447 650 0.96 # 21535 # 25017 # -1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.564 1_30 - 716 AAA_30 PF13604.1 196 4.5e-05 14.3 0.1 1 2 8.5e-05 0.0013 9.5 0.0 9 45 201 234 193 257 0.75 # 27209 # 29356 # -1 # ID=1_30;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_30 - 716 AAA_30 PF13604.1 196 4.5e-05 14.3 0.1 2 2 0.05 0.74 0.5 0.0 66 131 490 558 447 596 0.72 # 27209 # 29356 # -1 # ID=1_30;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_26 - 1161 AAA_19 PF13245.1 76 3.8e-08 24.3 1.2 1 2 2.5e-09 3.8e-08 24.3 1.2 13 74 467 522 454 524 0.72 # 21535 # 25017 # -1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.564 1_26 - 1161 AAA_19 PF13245.1 76 3.8e-08 24.3 1.2 2 2 0.008 0.12 3.5 0.1 38 63 663 695 632 713 0.72 # 21535 # 25017 # -1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.564 1_30 - 716 AAA_19 PF13245.1 76 6.5e-05 13.9 0.1 1 1 2.5e-05 0.00037 11.5 0.1 15 37 212 234 199 264 0.72 # 27209 # 29356 # -1 # ID=1_30;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_25 - 193 AAA_10 PF12846.2 304 1.2e-05 16.0 0.0 1 1 4.1e-07 1.2e-05 16.0 0.0 11 47 11 49 4 184 0.79 # 20511 # 21089 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.491 1_30 - 716 ResIII PF04851.10 184 1.7e-05 15.9 0.0 1 1 1.4e-06 4.2e-05 14.6 0.0 32 86 214 268 183 288 0.77 # 27209 # 29356 # -1 # ID=1_30;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_30 - 716 DUF2075 PF09848.4 352 0.00014 12.1 0.1 1 1 2.5e-05 0.00074 9.7 0.0 6 95 212 347 211 389 0.60 # 27209 # 29356 # -1 # ID=1_30;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_26 - 1161 AAA_11 PF13086.1 236 2.1e-08 25.2 15.8 1 2 9.6e-05 0.0029 8.4 0.0 2 90 448 525 447 542 0.80 # 21535 # 25017 # -1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.564 1_26 - 1161 AAA_11 PF13086.1 236 2.1e-08 25.2 15.8 2 2 5.7e-09 1.7e-07 22.2 0.1 195 231 546 585 532 587 0.90 # 21535 # 25017 # -1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.564 1_25 - 193 ArgK PF03308.11 267 3.8e-06 17.0 0.1 1 1 1.7e-07 5.2e-06 16.6 0.1 32 70 3 42 1 47 0.84 # 20511 # 21089 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.491 1_26 - 1161 PIF1 PF05970.9 364 2.5e-06 17.8 0.1 1 1 1.4e-07 4.2e-06 17.0 0.1 1 115 447 556 447 566 0.85 # 21535 # 25017 # -1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.564 1_30 - 716 UvrD-helicase PF00580.16 315 1e-08 26.0 0.1 1 3 2.1e-06 6.4e-05 13.5 0.0 5 57 199 248 195 280 0.76 # 27209 # 29356 # -1 # ID=1_30;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_30 - 716 UvrD-helicase PF00580.16 315 1e-08 26.0 0.1 2 3 7.7e-05 0.0023 8.4 0.0 256 285 335 364 319 373 0.86 # 27209 # 29356 # -1 # ID=1_30;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 1_30 - 716 UvrD-helicase PF00580.16 315 1e-08 26.0 0.1 3 3 0.059 1.8 -1.1 0.4 161 161 599 599 460 695 0.53 # 27209 # 29356 # -1 # ID=1_30;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.429 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/9280fa8f-d938-4b29-8213-eb41b9aca91c # Target file: checkm_output/bins/pAF164956.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pAF164956.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/9280fa8f-d938-4b29-8213-eb41b9aca91c checkm_output/bins/pAF164956.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:35:29 2020 # [ok]