# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_4 - 200 MipZ PF09140.6 261 1e-06 17.5 0.0 1 1 1.3e-07 1.2e-06 17.2 0.0 7 106 7 107 1 157 0.66 # 1452 # 2051 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 1_7 - 287 AAA_22 PF13401.1 131 7.7e-05 12.4 0.0 1 1 2.1e-05 0.00019 11.1 0.0 7 100 49 157 43 178 0.74 # 3974 # 4834 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 1_4 - 200 ArsA_ATPase PF02374.10 305 5e-06 15.2 0.4 1 1 9.1e-07 8.2e-06 14.5 0.2 6 49 6 51 1 78 0.84 # 1452 # 2051 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 1_4 - 200 VirC1 PF07015.6 231 1.3e-15 46.6 0.4 1 1 5.7e-16 5.1e-15 44.6 0.4 5 131 4 125 1 152 0.79 # 1452 # 2051 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 1_4 - 200 CbiA PF01656.18 195 5e-19 57.9 0.1 1 1 8.7e-20 7.8e-19 57.3 0.1 2 194 4 174 3 175 0.78 # 1452 # 2051 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 1_7 - 287 AAA PF00004.24 132 3.7e-07 19.9 0.0 1 1 2.7e-07 2.4e-06 17.3 0.0 3 130 51 219 49 221 0.68 # 3974 # 4834 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 1_7 - 287 FtsK_SpoIIIE PF01580.13 205 3.3e-12 35.8 0.0 1 1 1.1e-12 9.5e-12 34.3 0.0 15 204 23 201 15 202 0.83 # 3974 # 4834 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 1_7 - 287 AAA_19 PF13245.1 76 6.8e-05 12.2 2.4 1 1 1e-05 9e-05 11.8 0.8 11 35 47 71 39 87 0.80 # 3974 # 4834 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 1_7 - 287 AAA_10 PF12846.2 304 3.2e-12 35.9 0.3 1 2 8.4e-06 7.5e-05 11.7 0.6 4 39 49 86 46 117 0.85 # 3974 # 4834 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 1_7 - 287 AAA_10 PF12846.2 304 3.2e-12 35.9 0.3 2 2 5.9e-09 5.4e-08 22.0 0.0 216 295 140 230 118 235 0.86 # 3974 # 4834 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 1_7 - 287 Zot PF05707.7 193 1.7e-06 17.1 0.0 1 1 1.2e-06 1.1e-05 14.5 0.0 5 138 51 214 48 224 0.53 # 3974 # 4834 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 1_7 - 287 DUF2075 PF09848.4 352 3.3e-06 15.7 0.0 1 1 5.3e-07 4.8e-06 15.2 0.0 4 113 49 174 46 187 0.68 # 3974 # 4834 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 1_4 - 200 ParA PF10609.4 81 2.3e-05 13.8 0.1 1 1 4.9e-06 4.4e-05 12.9 0.1 5 51 82 126 80 139 0.87 # 1452 # 2051 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 1_4 - 200 AAA_25 PF13481.1 194 5.2e-05 12.2 0.8 1 1 2.4e-05 0.00011 11.1 0.8 35 66 3 38 2 168 0.87 # 1452 # 2051 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 1_7 - 287 AAA_25 PF13481.1 194 5.5e-05 12.1 0.0 1 1 6.6e-05 0.0003 9.7 0.0 36 157 49 159 38 192 0.67 # 3974 # 4834 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/af402fe7-e018-4a7d-ba14-7f01d04def6b # Target file: checkm_output/bins/pAF085719.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pAF085719.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/af402fe7-e018-4a7d-ba14-7f01d04def6b checkm_output/bins/pAF085719.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:35:23 2020 # [ok]