# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_18 - 92 ATP_bind_3 PF01171.15 182 0.0011 12.4 0.0 1 1 5.5e-06 0.0011 12.4 0.0 3 27 23 47 21 87 0.84 # 12068 # 12343 # 1 # ID=3_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.359 3_34 - 364 UPF0020 PF01170.13 180 6.8e-05 16.4 0.1 1 1 1.8e-06 0.00036 14.0 0.1 31 152 35 146 20 162 0.77 # 29484 # 30575 # 1 # ID=3_34;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_64 - 688 Seryl_tRNA_N PF02403.17 108 0.018 9.0 97.0 1 7 0.00012 0.024 8.6 10.4 41 99 260 321 251 327 0.70 # 56878 # 58941 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.289 1_64 - 688 Seryl_tRNA_N PF02403.17 108 0.018 9.0 97.0 2 7 0.0017 0.35 4.9 13.8 18 99 395 478 389 483 0.68 # 56878 # 58941 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.289 1_64 - 688 Seryl_tRNA_N PF02403.17 108 0.018 9.0 97.0 3 7 0.0019 0.38 4.8 17.3 26 99 436 509 411 513 0.56 # 56878 # 58941 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.289 1_64 - 688 Seryl_tRNA_N PF02403.17 108 0.018 9.0 97.0 4 7 4.2e-05 0.0085 10.0 11.0 37 103 512 579 510 581 0.95 # 56878 # 58941 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.289 1_64 - 688 Seryl_tRNA_N PF02403.17 108 0.018 9.0 97.0 5 7 4.7e-05 0.0095 9.9 14.8 11 104 531 625 529 635 0.84 # 56878 # 58941 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.289 1_64 - 688 Seryl_tRNA_N PF02403.17 108 0.018 9.0 97.0 6 7 0.0017 0.34 4.9 5.5 46 103 591 650 583 651 0.60 # 56878 # 58941 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.289 1_64 - 688 Seryl_tRNA_N PF02403.17 108 0.018 9.0 97.0 7 7 0.0064 1.3 3.0 2.7 43 84 635 677 631 681 0.72 # 56878 # 58941 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.289 1_24 - 273 FeoB_N PF02421.13 156 0.0015 11.7 1.0 1 2 0.0084 1.7 1.8 0.0 6 24 12 30 7 37 0.73 # 23444 # 24262 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.369 1_24 - 273 FeoB_N PF02421.13 156 0.0015 11.7 1.0 2 2 8.4e-05 0.017 8.3 0.3 77 123 158 209 129 221 0.80 # 23444 # 24262 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.369 1_24 - 273 MipZ PF09140.6 261 0.00041 13.4 0.0 1 2 1.2e-05 0.0024 10.8 0.0 11 134 16 134 6 142 0.65 # 23444 # 24262 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.369 1_24 - 273 MipZ PF09140.6 261 0.00041 13.4 0.0 2 2 0.0032 0.64 2.9 0.0 41 129 82 168 62 170 0.62 # 23444 # 24262 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.369 1_70 - 444 3HCDH_N PF02737.13 180 3.4e-05 17.5 0.0 1 2 8.6e-07 0.00018 15.1 0.0 2 49 3 50 2 84 0.75 # 63641 # 64972 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_70 - 444 3HCDH_N PF02737.13 180 3.4e-05 17.5 0.0 2 2 0.08 16 -1.0 0.0 14 45 334 370 332 395 0.65 # 63641 # 64972 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_25 - 478 AAA_2 PF07724.9 171 0.00083 13.2 1.4 1 2 0.024 4.8 0.9 0.0 4 45 184 225 183 234 0.85 # 24279 # 25712 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 1_25 - 478 AAA_2 PF07724.9 171 0.00083 13.2 1.4 2 2 3.4e-05 0.0069 10.2 0.0 2 42 234 276 233 282 0.84 # 24279 # 25712 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 1_47 - 416 DUF87 PF01935.12 229 4e-08 27.2 1.2 1 2 0.094 9.5 -0.2 0.1 163 197 19 58 7 105 0.60 # 39804 # 41051 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.373 1_47 - 416 DUF87 PF01935.12 229 4e-08 27.2 1.2 2 2 1.4e-09 1.4e-07 25.4 0.1 26 102 189 259 187 372 0.86 # 39804 # 41051 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.373 1_25 - 478 DUF87 PF01935.12 229 5.9e-05 16.8 0.5 1 1 1.7e-06 0.00017 15.3 0.1 25 57 237 270 213 274 0.75 # 24279 # 25712 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 4_10 - 489 AAA_22 PF13401.1 131 5.8e-06 20.4 0.2 1 1 4.9e-06 0.0005 14.1 0.1 4 124 203 305 199 312 0.62 # 6507 # 7973 # -1 # ID=4_10;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 1_25 - 478 AAA_22 PF13401.1 131 1.3e-05 19.3 0.0 1 1 3.7e-07 3.7e-05 17.8 0.0 3 69 234 325 231 382 0.85 # 24279 # 25712 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 1_14 - 379 ATP_bind_1 PF03029.12 238 0.001 12.5 0.2 1 1 9.9e-06 0.002 11.6 0.2 157 237 155 233 129 234 0.83 # 12404 # 13540 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.322 4_10 - 489 AAA_3 PF07726.6 131 0.00094 12.7 0.0 1 1 1e-05 0.002 11.6 0.0 3 91 207 298 205 306 0.78 # 6507 # 7973 # -1 # ID=4_10;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 1_70 - 444 NAD_binding_7 PF13241.1 103 0.0019 12.4 1.4 1 2 0.00048 0.097 6.9 0.1 9 90 2 106 1 118 0.62 # 63641 # 64972 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_70 - 444 NAD_binding_7 PF13241.1 103 0.0019 12.4 1.4 2 2 0.0056 1.1 3.5 0.1 23 74 335 390 335 405 0.70 # 63641 # 64972 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 4_10 - 489 AAA_17 PF13207.1 121 2.8e-05 18.9 0.4 1 1 6.4e-06 0.00043 15.0 0.0 3 40 207 255 206 279 0.72 # 6507 # 7973 # -1 # ID=4_10;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 1_25 - 478 AAA_17 PF13207.1 121 4.3e-05 18.2 0.3 1 1 2.5e-06 0.00017 16.3 0.0 2 23 238 259 237 409 0.75 # 24279 # 25712 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 1_47 - 416 AAA_17 PF13207.1 121 0.008 10.9 3.5 1 1 0.00015 0.01 10.6 1.8 2 22 189 210 188 395 0.72 # 39804 # 41051 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.373 1_24 - 273 MobB PF03205.9 140 0.00026 14.6 0.0 1 1 3e-06 0.00062 13.4 0.0 8 38 14 44 7 106 0.86 # 23444 # 24262 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.369 3_6 - 190 AAA_4 PF04326.9 122 8e-21 68.4 1.1 1 1 5.5e-23 1.1e-20 67.9 1.1 1 122 31 169 31 169 0.94 # 4264 # 4833 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.309 1_24 - 273 ArsA_ATPase PF02374.10 305 0.00047 13.1 0.3 1 1 4.8e-06 0.00098 12.1 0.1 12 38 17 43 9 147 0.76 # 23444 # 24262 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.369 4_10 - 489 PhoH PF02562.11 205 1.6e-07 24.7 0.5 1 2 1e-05 0.0021 11.2 0.0 5 40 187 224 183 238 0.79 # 6507 # 7973 # -1 # ID=4_10;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 4_10 - 489 PhoH PF02562.11 205 1.6e-07 24.7 0.5 2 2 9.2e-06 0.0019 11.4 0.1 117 170 267 322 242 342 0.74 # 6507 # 7973 # -1 # ID=4_10;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 1_25 - 478 MCM PF00493.18 331 4.5e-05 16.2 0.0 1 1 5.2e-07 0.00011 15.0 0.0 53 84 231 262 221 268 0.90 # 24279 # 25712 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 1_25 - 478 T2SE PF00437.15 272 1e-45 149.6 0.0 1 1 1.7e-47 1.8e-45 148.8 0.0 5 270 111 391 108 393 0.91 # 24279 # 25712 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 4_10 - 489 T2SE PF00437.15 272 0.00037 13.3 0.0 1 1 7.1e-06 0.00072 12.4 0.0 107 162 185 236 170 279 0.72 # 6507 # 7973 # -1 # ID=4_10;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 1_16 - 493 AAA_26 PF13500.1 199 0.00091 12.8 0.0 1 2 0.093 19 -1.3 0.0 38 64 124 150 93 191 0.67 # 15223 # 16701 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.348 1_16 - 493 AAA_26 PF13500.1 199 0.00091 12.8 0.0 2 2 1.6e-05 0.0032 11.0 0.0 1 34 219 252 219 336 0.86 # 15223 # 16701 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.348 1_70 - 444 NAD_binding_8 PF13450.1 68 0.00058 13.8 0.1 1 1 6.8e-06 0.0014 12.6 0.1 1 27 5 31 5 34 0.94 # 63641 # 64972 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_70 - 444 FAD_binding_3 PF01494.14 356 4.2e-05 16.6 0.1 1 1 4.9e-07 0.0001 15.3 0.0 4 40 3 39 1 47 0.91 # 63641 # 64972 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 3_18 - 92 TIGR02432 TIGR02432 189 0.00012 15.6 0.0 1 1 6.6e-07 0.00013 15.5 0.0 3 27 23 47 21 88 0.84 # 12068 # 12343 # 1 # ID=3_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.359 1_24 - 273 Fer4_NifH PF00142.13 273 0.0012 12.0 0.0 1 1 8.7e-06 0.0018 11.4 0.0 2 63 7 70 6 89 0.74 # 23444 # 24262 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.369 3_7 - 275 AAA_23 PF13476.1 202 1.2e-06 22.9 2.1 1 1 7.6e-09 1.5e-06 22.5 2.1 1 77 5 87 5 246 0.61 # 4833 # 5657 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.288 1_25 - 478 AAA_18 PF13238.1 129 2.8e-05 18.3 0.1 1 1 3.3e-06 0.00022 15.5 0.0 1 36 238 280 238 360 0.67 # 24279 # 25712 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 4_10 - 489 AAA_18 PF13238.1 129 0.00072 13.8 1.8 1 1 2.4e-05 0.0016 12.7 0.3 2 67 207 297 207 399 0.74 # 6507 # 7973 # -1 # ID=4_10;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 1_47 - 416 AAA_18 PF13238.1 129 0.046 7.9 7.9 1 2 0.00016 0.011 10.0 1.2 1 68 189 276 189 311 0.67 # 39804 # 41051 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.373 1_47 - 416 AAA_18 PF13238.1 129 0.046 7.9 7.9 2 2 0.087 5.9 1.1 0.1 23 88 327 388 293 400 0.70 # 39804 # 41051 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.373 1_64 - 688 AAA_13 PF13166.1 712 7.4e-05 15.2 88.6 1 3 0.011 2.3 0.4 30.1 307 467 254 419 248 424 0.55 # 56878 # 58941 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.289 1_64 - 688 AAA_13 PF13166.1 712 7.4e-05 15.2 88.6 2 3 1.9e-06 0.00039 12.8 41.7 276 471 365 555 355 565 0.80 # 56878 # 58941 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.289 1_64 - 688 AAA_13 PF13166.1 712 7.4e-05 15.2 88.6 3 3 1.3e-05 0.0026 10.1 20.1 290 402 563 678 545 682 0.82 # 56878 # 58941 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.289 1_24 - 273 CbiA PF01656.18 195 1.1e-11 38.4 0.0 1 1 8.2e-14 1.7e-11 37.8 0.0 1 169 8 212 8 227 0.73 # 23444 # 24262 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.369 1_25 - 478 IIGP PF05049.8 376 8e-05 15.4 0.1 1 2 0.0048 0.97 2.0 0.2 145 249 24 137 7 144 0.67 # 24279 # 25712 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 1_25 - 478 IIGP PF05049.8 376 8e-05 15.4 0.1 2 2 9.2e-06 0.0019 10.9 0.0 22 55 222 255 205 288 0.79 # 24279 # 25712 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 3_31 - 235 Ribosomal_S13 PF00416.17 107 0.00084 13.7 1.0 1 1 6.1e-06 0.0012 13.2 0.2 33 89 62 119 25 124 0.72 # 27502 # 28206 # -1 # ID=3_31;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.295 3_34 - 364 Methyltransf_25 PF13649.1 101 1.8e-05 19.0 0.2 1 1 3.2e-07 6.5e-05 17.2 0.0 3 73 38 103 36 134 0.84 # 29484 # 30575 # 1 # ID=3_34;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.377 4_10 - 489 AAA_14 PF13173.1 128 2.5e-07 24.6 3.3 1 2 2.2e-09 4.5e-07 23.7 0.2 4 85 205 295 203 304 0.69 # 6507 # 7973 # -1 # ID=4_10;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 4_10 - 489 AAA_14 PF13173.1 128 2.5e-07 24.6 3.3 2 2 0.06 12 -0.3 0.0 52 77 358 381 312 387 0.64 # 6507 # 7973 # -1 # ID=4_10;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 3_7 - 275 AAA_29 PF13555.1 62 0.00026 14.4 0.0 1 1 2.2e-06 0.00045 13.7 0.0 2 54 4 55 3 62 0.89 # 4833 # 5657 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.288 4_10 - 489 AAA PF00004.24 132 2.6e-05 18.3 0.0 1 1 3.4e-07 6.9e-05 17.0 0.0 3 74 208 285 206 298 0.69 # 6507 # 7973 # -1 # ID=4_10;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 1_9 - 436 PGK PF00162.14 384 0.00015 14.3 0.1 1 1 1.4e-06 0.00029 13.3 0.1 98 156 170 225 154 237 0.80 # 7870 # 9177 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.344 3_18 - 92 PAPS_reduct PF01507.14 174 7.1e-06 19.8 0.0 1 1 4.4e-08 9e-06 19.5 0.0 3 51 23 80 21 89 0.76 # 12068 # 12343 # 1 # ID=3_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.359 1_25 - 478 Sigma54_activat PF00158.21 168 1.5e-05 18.5 0.0 1 1 1.8e-07 3.7e-05 17.2 0.0 4 50 217 263 214 283 0.78 # 24279 # 25712 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 3_34 - 364 N6_Mtase PF02384.11 311 1.1e-06 21.8 0.7 1 1 5.4e-08 1.1e-05 18.5 0.7 26 180 10 140 5 264 0.70 # 29484 # 30575 # 1 # ID=3_34;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_25 - 478 DUF258 PF03193.11 161 0.00034 13.7 0.0 1 1 3.5e-06 0.0007 12.7 0.0 5 59 204 259 200 329 0.87 # 24279 # 25712 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 1_6 - 1110 TraG-D_C PF12696.2 128 1.8e-13 44.4 0.9 1 1 3.9e-15 7.9e-13 42.3 0.0 3 125 539 659 538 661 0.84 # 2223 # 5552 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_70 - 444 NAD_binding_2 PF03446.10 163 1.3e-08 28.7 0.5 1 2 6.1e-05 0.012 9.3 0.1 3 43 2 42 1 140 0.68 # 63641 # 64972 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_70 - 444 NAD_binding_2 PF03446.10 163 1.3e-08 28.7 0.5 2 2 2.8e-07 5.8e-05 16.9 0.0 15 93 333 409 332 423 0.89 # 63641 # 64972 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_24 - 273 AAA_31 PF13614.1 157 8.4e-21 68.4 0.1 1 1 1.4e-22 1.5e-20 67.7 0.1 1 152 6 171 6 174 0.86 # 23444 # 24262 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.369 1_16 - 493 AAA_31 PF13614.1 157 3.5e-07 24.2 0.1 1 1 7.3e-09 7.4e-07 23.1 0.1 1 152 219 374 219 379 0.79 # 15223 # 16701 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.348 4_10 - 489 DnaB_C PF03796.10 259 0.00014 14.6 0.3 1 2 0.0011 0.22 4.2 0.0 19 49 203 233 195 238 0.83 # 6507 # 7973 # -1 # ID=4_10;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 4_10 - 489 DnaB_C PF03796.10 259 0.00014 14.6 0.3 2 2 6.7e-05 0.014 8.2 0.2 93 156 262 324 234 339 0.75 # 6507 # 7973 # -1 # ID=4_10;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 3_34 - 364 Methyltransf_26 PF13659.1 117 1.6e-14 47.9 0.0 1 1 1.6e-16 3.2e-14 46.9 0.0 4 116 36 144 34 145 0.90 # 29484 # 30575 # 1 # ID=3_34;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_70 - 444 NAD_Gly3P_dh_N PF01210.18 157 8.5e-05 16.2 0.9 1 1 2.9e-06 0.00059 13.5 0.1 2 138 3 155 2 176 0.75 # 63641 # 64972 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_70 - 444 2-Hacid_dh_C PF02826.14 178 5.8e-05 16.2 0.1 1 2 0.00059 0.06 6.4 0.0 38 75 2 38 1 58 0.81 # 63641 # 64972 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_70 - 444 2-Hacid_dh_C PF02826.14 178 5.8e-05 16.2 0.1 2 2 0.00027 0.027 7.5 0.0 51 101 334 386 333 407 0.77 # 63641 # 64972 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_55 - 102 2-Hacid_dh_C PF02826.14 178 0.00044 13.3 0.1 1 1 8.1e-06 0.00082 12.5 0.1 37 97 4 55 1 59 0.84 # 49001 # 49306 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 4_10 - 489 AAA_30 PF13604.1 196 5.4e-08 26.5 0.0 1 1 2.5e-09 5e-07 23.3 0.0 2 137 187 313 186 343 0.80 # 6507 # 7973 # -1 # ID=4_10;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 1_70 - 444 ApbA PF02558.11 151 3.8e-05 17.1 0.0 1 1 4.2e-07 8.6e-05 15.9 0.0 1 37 3 40 3 96 0.90 # 63641 # 64972 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_25 - 478 FtsK_SpoIIIE PF01580.13 205 3.1e-05 17.4 0.0 1 1 3.1e-07 6.4e-05 16.4 0.0 32 58 229 255 208 260 0.77 # 24279 # 25712 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 3_34 - 364 MTS PF05175.9 170 9.2e-08 25.5 0.0 1 1 8.5e-10 1.7e-07 24.6 0.0 24 140 23 143 8 165 0.74 # 29484 # 30575 # 1 # ID=3_34;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_47 - 416 ABC_tran PF00005.22 137 0.0024 12.1 0.6 1 2 0.098 20 -0.6 0.1 51 84 54 89 9 117 0.54 # 39804 # 41051 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.373 1_47 - 416 ABC_tran PF00005.22 137 0.0024 12.1 0.6 2 2 4.9e-05 0.0099 10.1 0.1 13 31 188 206 184 249 0.86 # 39804 # 41051 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.373 4_21 - 215 DNA_mis_repair PF01119.14 119 0.00039 13.8 0.0 1 2 1.6e-05 0.0033 10.8 0.0 62 101 54 93 19 105 0.81 # 12914 # 13558 # -1 # ID=4_21;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.374 4_21 - 215 DNA_mis_repair PF01119.14 119 0.00039 13.8 0.0 2 2 0.023 4.6 0.7 0.0 11 38 178 210 172 214 0.69 # 12914 # 13558 # -1 # ID=4_21;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.374 3_34 - 364 Cons_hypoth95 PF03602.10 183 0.00077 12.8 0.0 1 1 7.9e-06 0.0016 11.7 0.0 99 146 85 129 63 140 0.72 # 29484 # 30575 # 1 # ID=3_34;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_70 - 444 UDPG_MGDP_dh_N PF03721.9 185 3.4e-64 209.5 1.9 1 1 2.8e-66 5.7e-64 208.8 1.9 1 185 1 184 1 184 0.97 # 63641 # 64972 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_25 - 478 AAA_19 PF13245.1 76 0.00074 13.2 0.0 1 1 2e-05 0.002 11.8 0.0 5 49 230 272 226 277 0.78 # 24279 # 25712 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 4_10 - 489 AAA_19 PF13245.1 76 0.00081 13.1 0.0 1 1 1.7e-05 0.0017 12.0 0.0 10 27 203 220 196 237 0.79 # 6507 # 7973 # -1 # ID=4_10;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 1_47 - 416 AAA_10 PF12846.2 304 1.4e-21 71.1 0.2 1 1 3.7e-23 2.5e-21 70.3 0.0 1 149 186 388 186 406 0.82 # 39804 # 41051 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.373 1_48 - 161 AAA_10 PF12846.2 304 2.2e-18 60.5 0.1 1 1 4.4e-20 3e-18 60.1 0.1 205 302 1 99 1 101 0.95 # 41141 # 41623 # 1 # ID=1_48;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.364 1_6 - 1110 AAA_10 PF12846.2 304 9.6e-11 35.5 0.1 1 2 2.4e-11 1.6e-09 31.5 0.0 3 267 220 578 218 599 0.69 # 2223 # 5552 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_6 - 1110 AAA_10 PF12846.2 304 9.6e-11 35.5 0.1 2 2 0.048 3.2 0.9 0.0 249 285 818 854 815 867 0.80 # 2223 # 5552 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_70 - 444 DAO PF01266.19 358 0.0027 10.5 0.4 1 1 2.5e-05 0.0051 9.6 0.4 2 29 3 30 2 34 0.92 # 63641 # 64972 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 3_36 - 878 ResIII PF04851.10 184 2e-05 18.4 0.8 1 2 0.0096 0.98 3.1 0.0 4 122 278 394 275 422 0.71 # 30842 # 33475 # 1 # ID=3_36;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.368 3_36 - 878 ResIII PF04851.10 184 2e-05 18.4 0.8 2 2 2.1e-05 0.0021 11.8 0.0 137 164 527 572 457 595 0.66 # 30842 # 33475 # 1 # ID=3_36;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.368 1_25 - 478 ResIII PF04851.10 184 0.00012 15.9 0.0 1 1 3.1e-06 0.00031 14.5 0.0 22 64 226 279 196 308 0.78 # 24279 # 25712 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 3_34 - 364 Methyltransf_31 PF13847.1 152 6.1e-05 16.5 0.0 1 1 5.3e-07 0.00011 15.8 0.0 7 109 36 142 30 181 0.74 # 29484 # 30575 # 1 # ID=3_34;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.377 4_10 - 489 Zot PF05707.7 193 0.0003 14.2 0.0 1 1 4.8e-06 0.00096 12.5 0.0 3 97 206 287 204 307 0.82 # 6507 # 7973 # -1 # ID=4_10;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 1_64 - 688 DUF3584 PF12128.3 1201 0.078 4.1 76.1 1 3 0.012 2.4 -0.8 27.2 321 468 256 406 242 423 0.51 # 56878 # 58941 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.289 1_64 - 688 DUF3584 PF12128.3 1201 0.078 4.1 76.1 2 3 0.0006 0.12 3.4 52.6 238 523 368 658 359 667 0.71 # 56878 # 58941 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.289 1_64 - 688 DUF3584 PF12128.3 1201 0.078 4.1 76.1 3 3 0.0003 0.062 4.4 1.3 293 344 633 684 624 686 0.81 # 56878 # 58941 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.289 4_10 - 489 Viral_helicase1 PF01443.13 234 5.3e-07 23.2 0.0 1 1 5e-09 1e-06 22.3 0.0 1 232 206 469 206 471 0.69 # 6507 # 7973 # -1 # ID=4_10;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 4_10 - 489 DUF2075 PF09848.4 352 1.5e-12 41.0 1.6 1 2 2.3e-12 4.6e-10 32.8 0.5 2 207 204 378 203 390 0.76 # 6507 # 7973 # -1 # ID=4_10;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 4_10 - 489 DUF2075 PF09848.4 352 1.5e-12 41.0 1.6 2 2 0.00023 0.046 6.5 0.0 279 322 416 458 400 479 0.78 # 6507 # 7973 # -1 # ID=4_10;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 1_6 - 1110 DEAD PF00270.24 169 0.0002 14.8 0.1 1 1 9.2e-06 0.00093 12.6 0.0 18 69 222 298 204 348 0.76 # 2223 # 5552 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_25 - 478 DEAD PF00270.24 169 0.001 12.5 0.0 1 1 3.5e-05 0.0035 10.7 0.0 13 56 234 277 222 282 0.79 # 24279 # 25712 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 1_70 - 444 Pyr_redox PF00070.22 80 4.7e-05 17.7 0.2 1 1 1.2e-06 0.00025 15.4 0.0 2 67 3 72 2 81 0.71 # 63641 # 64972 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_6 - 1110 TrwB_AAD_bind PF10412.4 386 2.3e-10 33.5 0.6 1 2 0.081 5.5 -0.7 0.1 9 32 212 235 206 242 0.77 # 2223 # 5552 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_6 - 1110 TrwB_AAD_bind PF10412.4 386 2.3e-10 33.5 0.6 2 2 3.9e-11 2.6e-09 30.0 0.0 169 383 465 678 449 680 0.74 # 2223 # 5552 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_25 - 478 TrwB_AAD_bind PF10412.4 386 3.9e-05 16.3 0.1 1 1 2.7e-06 0.00019 14.0 0.0 14 50 234 272 225 295 0.79 # 24279 # 25712 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 1_47 - 416 TrwB_AAD_bind PF10412.4 386 0.00011 14.8 0.0 1 1 2.7e-06 0.00018 14.1 0.0 17 70 188 251 181 254 0.84 # 39804 # 41051 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.373 4_10 - 489 AAA_11 PF13086.1 236 0.00065 13.2 0.1 1 1 4.2e-06 0.00085 12.8 0.1 6 44 191 238 187 468 0.83 # 6507 # 7973 # -1 # ID=4_10;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 1_25 - 478 Sigma54_activ_2 PF14532.1 138 2.3e-05 18.4 0.0 1 1 2.8e-07 5.7e-05 17.1 0.0 3 44 217 258 215 277 0.87 # 24279 # 25712 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 1_25 - 478 RNA_helicase PF00910.17 107 0.00011 16.3 0.0 1 1 1.6e-06 0.00033 14.7 0.0 1 31 238 265 238 287 0.77 # 24279 # 25712 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 1_70 - 444 TrkA_N PF02254.13 116 3.5e-05 17.7 0.8 1 2 1.5e-05 0.0031 11.4 0.1 1 38 3 40 3 48 0.91 # 63641 # 64972 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_70 - 444 TrkA_N PF02254.13 116 3.5e-05 17.7 0.8 2 2 0.0041 0.84 3.6 0.1 13 61 334 380 331 407 0.79 # 63641 # 64972 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 3_4 - 328 S1 PF00575.18 74 3e-05 18.0 5.6 1 3 0.022 4.5 1.4 0.0 20 46 82 119 77 137 0.71 # 2279 # 3262 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.387 3_4 - 328 S1 PF00575.18 74 3e-05 18.0 5.6 2 3 5.9e-06 0.0012 12.9 0.6 5 68 156 218 152 221 0.91 # 2279 # 3262 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.387 3_4 - 328 S1 PF00575.18 74 3e-05 18.0 5.6 3 3 0.0031 0.62 4.2 0.4 6 27 244 266 240 269 0.88 # 2279 # 3262 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.387 4_10 - 489 AAA_25 PF13481.1 194 0.00022 14.6 0.0 1 1 5.2e-06 0.00053 13.3 0.0 29 58 202 228 186 318 0.78 # 6507 # 7973 # -1 # ID=4_10;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 1_25 - 478 AAA_25 PF13481.1 194 0.00039 13.7 0.0 1 1 8.4e-06 0.00086 12.6 0.0 36 77 238 279 206 281 0.84 # 24279 # 25712 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 4_10 - 489 AAA_5 PF07728.9 139 0.00032 14.3 0.0 1 1 5.4e-06 0.0011 12.6 0.0 3 94 207 298 206 340 0.72 # 6507 # 7973 # -1 # ID=4_10;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 1_24 - 273 APS_kinase PF01583.15 157 0.00015 15.4 0.0 1 1 1.4e-06 0.00027 14.5 0.0 10 57 14 61 6 71 0.88 # 23444 # 24262 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.369 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/8bca02c2-fa49-4bbf-9866-ecf737083281 # Target file: checkm_output/bins/pAF065404.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pAF065404.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/8bca02c2-fa49-4bbf-9866-ecf737083281 checkm_output/bins/pAF065404.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:35:25 2020 # [ok]