# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_6 - 155 Seryl_tRNA_N PF02403.17 108 0.0012 8.2 8.8 1 1 3.1e-05 0.00025 10.5 5.1 23 88 74 143 48 148 0.79 # 3407 # 3871 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AAAA;rbs_spacer=12bp;gc_cont=0.348 1_4 - 568 PRK PF00485.13 194 0.00017 10.5 1.6 1 1 2.1e-05 0.00017 10.5 0.1 2 26 359 383 358 408 0.82 # 652 # 2355 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.261 1_4 - 568 AAA_17 PF13207.1 121 1.7e-06 18.2 0.0 1 1 4.3e-07 3.5e-06 17.2 0.0 2 32 359 401 358 484 0.73 # 652 # 2355 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.261 1_4 - 568 MobB PF03205.9 140 8.9e-05 11.6 0.8 1 1 3.1e-05 0.00025 10.1 0.2 2 18 358 374 357 387 0.84 # 652 # 2355 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.261 1_4 - 568 SMC_N PF02463.14 220 3e-09 25.7 0.5 1 2 0.00017 0.0014 7.2 0.2 26 44 358 376 340 385 0.80 # 652 # 2355 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.261 1_4 - 568 SMC_N PF02463.14 220 3e-09 25.7 0.5 2 2 1.9e-07 1.5e-06 16.9 0.0 109 208 385 536 373 544 0.82 # 652 # 2355 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.261 1_4 - 568 AAA_16 PF13191.1 185 6.5e-05 12.3 0.0 1 1 1.3e-05 0.0001 11.7 0.0 24 52 356 390 343 539 0.71 # 652 # 2355 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.261 1_4 - 568 AAA_23 PF13476.1 202 0.00012 11.8 8.8 1 2 0.042 0.34 0.5 0.0 135 186 167 218 38 232 0.72 # 652 # 2355 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.261 1_4 - 568 AAA_23 PF13476.1 202 0.00012 11.8 8.8 2 2 2.1e-05 0.00017 11.3 5.6 21 42 358 379 329 556 0.68 # 652 # 2355 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.261 1_4 - 568 AAA_18 PF13238.1 129 1.7e-05 14.5 0.3 1 1 6.9e-06 5.6e-05 12.8 0.0 1 23 359 396 359 460 0.70 # 652 # 2355 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.261 1_4 - 568 AAA_14 PF13173.1 128 7.8e-06 15.2 0.2 1 2 1.2e-05 9.9e-05 11.6 0.1 3 48 357 402 355 454 0.79 # 652 # 2355 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.261 1_4 - 568 AAA_14 PF13173.1 128 7.8e-06 15.2 0.2 2 2 0.029 0.23 0.7 0.0 61 74 486 499 464 538 0.66 # 652 # 2355 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.261 1_4 - 568 AAA_29 PF13555.1 62 1e-06 17.7 0.1 1 1 2.9e-07 2.4e-06 16.5 0.1 13 40 347 373 344 377 0.85 # 652 # 2355 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.261 1_4 - 568 AAA PF00004.24 132 5.4e-06 16.0 0.0 1 1 6.8e-06 5.5e-05 12.8 0.0 3 93 361 511 359 536 0.73 # 652 # 2355 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.261 1_4 - 568 DUF258 PF03193.11 161 1.2e-05 13.9 0.0 1 1 3e-06 2.4e-05 12.9 0.0 17 59 337 380 322 409 0.79 # 652 # 2355 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.261 1_4 - 568 AAA_30 PF13604.1 196 7.3e-05 11.7 0.0 1 1 1.5e-05 0.00012 11.0 0.0 21 50 359 388 341 395 0.86 # 652 # 2355 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.261 1_4 - 568 ABC_tran PF00005.22 137 5.9e-32 100.2 0.1 1 1 1.7e-32 1.3e-31 99.1 0.0 1 137 346 497 346 497 0.87 # 652 # 2355 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.261 1_4 - 568 ATP-synt_ab PF00006.20 215 9.8e-05 11.2 0.5 1 1 2.3e-05 0.00018 10.3 0.2 7 35 348 376 340 397 0.85 # 652 # 2355 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.261 1_4 - 568 AAA_19 PF13245.1 76 9.8e-05 11.5 0.0 1 1 2.6e-05 0.00021 10.5 0.0 12 36 359 381 351 399 0.82 # 652 # 2355 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.261 1_4 - 568 DEAD PF00270.24 169 2.9e-05 12.9 0.0 1 1 8.4e-06 6.7e-05 11.8 0.0 14 70 356 505 342 545 0.82 # 652 # 2355 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.261 1_4 - 568 AAA_5 PF07728.9 139 6.9e-05 12.0 0.0 1 2 0.00038 0.003 6.6 0.0 4 23 361 380 358 392 0.85 # 652 # 2355 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.261 1_4 - 568 AAA_5 PF07728.9 139 6.9e-05 12.0 0.0 2 2 0.0072 0.057 2.5 0.0 59 81 468 502 414 540 0.79 # 652 # 2355 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.261 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/c11bb580-0cd4-4d48-823f-29753462f5e9 # Target file: checkm_output/bins/pAF056207.2.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pAF056207.2.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c11bb580-0cd4-4d48-823f-29753462f5e9 checkm_output/bins/pAF056207.2.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:35:22 2020 # [ok]