# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_7 - 405 TIGR00392 TIGR00392 861 1.7e-07 21.4 0.0 1 2 0.063 3.3 -2.7 0.0 51 79 55 83 54 84 0.92 # 7287 # 8501 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.675 2_7 - 405 TIGR00392 TIGR00392 861 1.7e-07 21.4 0.0 2 2 7.5e-09 4e-07 20.2 0.0 605 665 284 345 276 350 0.85 # 7287 # 8501 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.675 6_2 - 254 RrnaAD PF00398.15 262 1.3e-70 229.4 0.0 1 1 3e-72 1.6e-70 229.1 0.0 3 236 6 228 4 237 0.97 # 950 # 1711 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 3_1 - 209 MipZ PF09140.6 261 9.1e-14 43.1 0.3 1 1 7.9e-15 4.2e-13 40.9 0.3 4 171 5 157 2 161 0.70 # 271 # 897 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 6_2 - 254 Methyltransf_18 PF12847.2 112 2.5e-05 16.9 0.0 1 1 7e-07 3.7e-05 16.3 0.0 3 69 35 95 33 180 0.75 # 950 # 1711 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 2_2 - 529 AAA_22 PF13401.1 131 2.1e-05 16.7 0.5 1 1 3.5e-06 0.00019 13.6 0.5 4 99 310 455 307 485 0.61 # 1711 # 3297 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.688 6_2 - 254 Methyltransf_11 PF08241.7 95 0.00023 13.7 0.0 1 1 8.1e-06 0.00043 12.8 0.0 2 57 38 92 37 104 0.89 # 950 # 1711 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 3_1 - 209 SRP54 PF00448.17 196 1e-06 20.3 0.0 1 2 6.3e-08 3.3e-06 18.6 0.0 11 102 12 104 3 113 0.78 # 271 # 897 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 3_1 - 209 SRP54 PF00448.17 196 1e-06 20.3 0.0 2 2 0.025 1.3 0.4 0.0 76 100 100 124 96 142 0.78 # 271 # 897 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 2_2 - 529 AAA_17 PF13207.1 121 0.00015 14.6 1.1 1 1 8.1e-06 0.00043 13.1 1.1 3 20 314 331 313 344 0.93 # 1711 # 3297 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.688 3_1 - 209 LpxK PF02606.9 326 6.2e-05 14.0 0.0 1 1 1.8e-06 9.4e-05 13.4 0.0 36 71 2 36 1 39 0.90 # 271 # 897 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_1 - 593 Helicase_C PF00271.26 78 4.5e-06 18.6 0.2 1 1 3.9e-07 2.1e-05 16.4 0.1 20 78 465 525 451 525 0.89 # 243 # 2021 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.547 3_1 - 209 ArsA_ATPase PF02374.10 305 0.00043 11.4 0.3 1 2 6.8e-05 0.0036 8.3 0.3 7 38 8 39 2 46 0.89 # 271 # 897 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 3_1 - 209 ArsA_ATPase PF02374.10 305 0.00043 11.4 0.3 2 2 0.017 0.89 0.4 0.0 118 141 77 100 52 108 0.80 # 271 # 897 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 3_1 - 209 VirC1 PF07015.6 231 7e-13 40.1 0.0 1 1 1.7e-14 9.2e-13 39.7 0.0 1 130 1 132 1 153 0.80 # 271 # 897 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 2_2 - 529 AAA_16 PF13191.1 185 1.9e-07 23.3 2.7 1 1 7.2e-09 3.8e-07 22.2 2.7 24 178 310 471 286 497 0.60 # 1711 # 3297 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.688 3_1 - 209 AAA_18 PF13238.1 129 0.00027 13.3 0.0 1 1 8.4e-06 0.00045 12.6 0.0 8 86 12 99 6 115 0.69 # 271 # 897 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 3_1 - 209 CbiA PF01656.18 195 6.4e-21 66.6 0.0 1 1 1.5e-22 7.8e-21 66.3 0.0 3 177 6 166 4 183 0.71 # 271 # 897 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 6_2 - 254 Methyltransf_25 PF13649.1 101 8.3e-06 18.2 0.0 1 1 3e-07 1.6e-05 17.3 0.0 1 92 36 117 36 119 0.86 # 950 # 1711 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 2_7 - 405 tRNA-synt_1 PF00133.17 601 0.00011 12.3 0.1 1 2 0.046 2.4 -2.1 0.1 38 66 55 83 52 86 0.92 # 7287 # 8501 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.675 2_7 - 405 tRNA-synt_1 PF00133.17 601 0.00011 12.3 0.1 2 2 5.4e-06 0.00029 10.9 0.0 549 596 278 325 259 330 0.79 # 7287 # 8501 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.675 2_7 - 405 tRNA-synt_1g PF09334.6 391 3.3e-11 34.4 0.0 1 2 3.5e-07 1.9e-05 15.4 0.0 12 83 53 124 45 181 0.82 # 7287 # 8501 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.675 2_7 - 405 tRNA-synt_1g PF09334.6 391 3.3e-11 34.4 0.0 2 2 1.2e-07 6.1e-06 17.0 0.0 311 371 274 334 250 353 0.76 # 7287 # 8501 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.675 2_2 - 529 AAA_29 PF13555.1 62 1.8e-06 19.5 0.3 1 1 9.3e-08 4.9e-06 18.1 0.3 20 45 307 331 300 343 0.79 # 1711 # 3297 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.688 2_2 - 529 AAA PF00004.24 132 0.00031 13.0 0.3 1 1 7.2e-05 0.0038 9.5 0.3 3 74 315 458 313 495 0.58 # 1711 # 3297 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.688 1_5 - 953 N6_Mtase PF02384.11 311 2.4e-07 22.0 0.0 1 1 1.9e-08 1e-06 20.0 0.0 44 186 394 583 378 589 0.80 # 5491 # 8349 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.543 2_2 - 529 DUF258 PF03193.11 161 4e-06 18.1 0.2 1 1 1.3e-07 6.9e-06 17.3 0.2 35 83 310 363 287 370 0.79 # 1711 # 3297 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.688 3_1 - 209 AAA_31 PF13614.1 157 1.5e-07 23.5 0.0 1 2 8.2e-07 4.3e-05 15.5 0.0 3 43 4 44 2 52 0.88 # 271 # 897 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 3_1 - 209 AAA_31 PF13614.1 157 1.5e-07 23.5 0.0 2 2 0.00065 0.034 6.1 0.0 119 156 87 123 75 124 0.82 # 271 # 897 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_5 - 953 Methyltransf_26 PF13659.1 117 4.7e-12 38.0 0.0 1 1 4.4e-13 1.2e-11 36.8 0.0 3 116 399 581 397 582 0.76 # 5491 # 8349 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.543 6_2 - 254 Methyltransf_26 PF13659.1 117 2.9e-09 29.0 0.1 1 1 1.6e-10 4.3e-09 28.5 0.1 4 91 36 112 33 151 0.79 # 950 # 1711 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 3_1 - 209 AAA_30 PF13604.1 196 0.0003 12.4 0.0 1 1 9.2e-06 0.00049 11.7 0.0 21 52 5 36 3 94 0.82 # 271 # 897 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 6_2 - 254 MTS PF05175.9 170 5.7e-08 24.3 0.0 1 1 1.6e-09 8.6e-08 23.7 0.0 27 114 28 110 4 119 0.82 # 950 # 1711 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 2_7 - 405 tRNA-synt_1f PF01921.13 360 6.6e-05 13.6 0.0 1 2 0.00019 0.01 6.4 0.0 26 72 44 90 23 103 0.82 # 7287 # 8501 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.675 2_7 - 405 tRNA-synt_1f PF01921.13 360 6.6e-05 13.6 0.0 2 2 0.00052 0.027 5.0 0.0 275 341 284 349 276 366 0.72 # 7287 # 8501 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.675 2_2 - 529 ABC_tran PF00005.22 137 7.9e-23 73.3 0.0 1 1 4.9e-24 1.3e-22 72.6 0.0 10 137 309 453 305 453 0.94 # 1711 # 3297 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.688 2_1 - 520 ABC_tran PF00005.22 137 7.9e-14 44.2 0.0 1 1 5.1e-15 1.3e-13 43.4 0.0 68 136 390 476 362 477 0.74 # 151 # 1710 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.686 2_7 - 405 tRNA-synt_1e PF01406.14 301 6.7e-91 296.4 0.0 1 1 1.5e-92 8.1e-91 296.2 0.0 5 300 37 338 33 339 0.96 # 7287 # 8501 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.675 5_1 - 136 RuvB_N PF05496.7 234 0.00049 11.2 0.0 1 1 1.1e-05 0.00059 10.9 0.0 91 146 48 105 37 128 0.79 # 21 # 428 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.566 3_1 - 209 AAA_19 PF13245.1 76 3e-05 15.8 0.1 1 2 7.5e-06 0.0004 12.2 0.1 14 37 6 29 2 48 0.79 # 271 # 897 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 3_1 - 209 AAA_19 PF13245.1 76 3e-05 15.8 0.1 2 2 0.022 1.2 1.1 0.0 9 19 85 95 76 97 0.77 # 271 # 897 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 2_2 - 529 AAA_10 PF12846.2 304 6.6e-05 14.4 0.5 1 2 1e-05 0.00053 11.4 0.1 3 22 312 331 310 354 0.87 # 1711 # 3297 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.688 2_2 - 529 AAA_10 PF12846.2 304 6.6e-05 14.4 0.5 2 2 0.018 0.96 0.7 0.0 219 249 441 470 429 489 0.72 # 1711 # 3297 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.688 6_2 - 254 NodS PF05401.6 201 0.00042 11.7 0.0 1 1 1.1e-05 0.00059 11.2 0.0 41 102 30 90 17 108 0.80 # 950 # 1711 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_1 - 593 ResIII PF04851.10 184 9.6e-06 17.5 1.7 1 1 4.5e-06 0.00024 13.0 1.7 27 160 6 187 2 200 0.45 # 243 # 2021 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.547 1_1 - 593 DEAD PF00270.24 169 1.4e-07 23.2 0.0 1 2 1.3e-07 7e-06 17.6 0.0 16 142 6 133 1 158 0.78 # 243 # 2021 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.547 1_1 - 593 DEAD PF00270.24 169 1.4e-07 23.2 0.0 2 2 0.0025 0.13 3.7 0.1 120 141 174 195 131 212 0.68 # 243 # 2021 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.547 6_2 - 254 TIGR00755 TIGR00755 256 5.1e-44 142.1 0.0 1 1 1.2e-45 6.5e-44 141.8 0.0 4 219 8 217 6 236 0.92 # 950 # 1711 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 6_2 - 254 Methyltransf_23 PF13489.1 161 1.3e-05 17.0 0.0 1 1 3.4e-07 1.8e-05 16.5 0.0 20 60 30 82 9 123 0.79 # 950 # 1711 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 3_1 - 209 AAA_25 PF13481.1 194 7.2e-07 20.8 0.0 1 1 4.9e-08 1.3e-06 19.9 0.0 35 150 4 93 2 99 0.80 # 271 # 897 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 2_2 - 529 AAA_25 PF13481.1 194 0.00079 10.9 7.7 1 1 0.00013 0.0033 8.8 7.6 32 173 309 468 301 486 0.65 # 1711 # 3297 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.688 1_1 - 593 SNF2_N PF00176.18 299 7.3e-14 43.2 0.0 1 1 1.3e-14 6.8e-13 40.0 0.0 26 239 5 320 2 345 0.83 # 243 # 2021 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.547 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/80fd2efc-bdec-4d60-ba3f-dcf5433c3863 # Target file: checkm_output/bins/pAF024666.2.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pAF024666.2.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/80fd2efc-bdec-4d60-ba3f-dcf5433c3863 checkm_output/bins/pAF024666.2.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:35:22 2020 # [ok]