# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_10 - 127 Methyltransf_8 PF05148.10 219 2.9e-07 20.1 0.0 1 2 0.0064 0.071 2.4 0.0 72 104 9 45 6 53 0.78 # 8462 # 8842 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.336 1_10 - 127 Methyltransf_8 PF05148.10 219 2.9e-07 20.1 0.0 2 2 5e-07 5.5e-06 15.9 0.0 107 156 70 123 52 126 0.84 # 8462 # 8842 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.336 1_10 - 127 Methyltransf_12 PF08242.7 99 3e-13 40.0 0.0 1 1 3.7e-14 4.1e-13 39.6 0.0 1 99 14 121 14 121 0.76 # 8462 # 8842 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.336 1_10 - 127 Methyltransf_18 PF12847.2 112 3.6e-15 46.4 0.0 1 1 3.6e-16 4e-15 46.2 0.0 2 109 9 123 8 126 0.86 # 8462 # 8842 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.336 1_10 - 127 MetW PF07021.7 193 2.1e-06 17.0 0.1 1 1 4.1e-07 4.6e-06 15.9 0.1 7 101 3 114 1 118 0.65 # 8462 # 8842 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.336 1_10 - 127 Methyltransf_11 PF08241.7 95 2.4e-24 75.6 0.0 1 1 2.8e-25 3.1e-24 75.2 0.0 1 95 14 123 14 123 0.92 # 8462 # 8842 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.336 1_5 - 510 AAA_21 PF13304.1 303 1.2e-07 21.7 29.1 1 2 1.1e-08 1.2e-07 21.7 29.1 2 299 32 346 31 351 0.57 # 4703 # 6232 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=3bp;gc_cont=0.269 1_5 - 510 AAA_21 PF13304.1 303 1.2e-07 21.7 29.1 2 2 0.015 0.17 1.5 2.4 43 121 369 447 346 464 0.65 # 4703 # 6232 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=3bp;gc_cont=0.269 1_10 - 127 CMAS PF02353.15 273 8.1e-08 21.4 0.0 1 1 9.6e-09 1.1e-07 21.0 0.0 64 164 11 123 4 125 0.80 # 8462 # 8842 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.336 1_10 - 127 Methyltransf_24 PF13578.1 106 3.5e-06 17.7 0.0 1 1 3.9e-07 4.3e-06 17.4 0.0 2 103 15 123 14 126 0.70 # 8462 # 8842 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.336 1_5 - 510 SMC_N PF02463.14 220 6e-08 21.9 8.7 1 1 1.6e-07 1.7e-06 17.1 8.7 5 206 6 353 1 361 0.78 # 4703 # 6232 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=3bp;gc_cont=0.269 1_5 - 510 AAA_23 PF13476.1 202 1.7e-06 18.3 24.7 1 1 3e-07 1.7e-06 18.3 24.7 2 176 6 202 6 248 0.58 # 4703 # 6232 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=3bp;gc_cont=0.269 1_2 - 196 AAA_23 PF13476.1 202 7.3e-05 12.9 18.3 1 1 2e-05 0.00011 12.3 18.3 106 202 53 175 2 184 0.46 # 1426 # 2013 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAAA;rbs_spacer=13bp;gc_cont=0.338 1_5 - 510 AAA_13 PF13166.1 712 3.4e-30 94.8 35.3 1 2 3.3e-12 3.6e-11 31.9 20.0 15 195 28 232 10 249 0.64 # 4703 # 6232 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=3bp;gc_cont=0.269 1_5 - 510 AAA_13 PF13166.1 712 3.4e-30 94.8 35.3 2 2 6.4e-23 7e-22 67.3 9.6 469 650 248 427 231 454 0.73 # 4703 # 6232 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=3bp;gc_cont=0.269 1_10 - 127 Methyltransf_25 PF13649.1 101 1.4e-11 34.5 0.0 1 1 2e-12 2.2e-11 33.9 0.0 1 101 13 119 13 119 0.78 # 8462 # 8842 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.336 1_10 - 127 Ubie_methyltran PF01209.13 233 4.7e-15 45.1 0.0 1 1 5.1e-16 5.6e-15 44.8 0.0 49 154 11 126 2 126 0.86 # 8462 # 8842 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.336 1_10 - 127 Rsm22 PF09243.5 275 4.7e-05 12.2 0.0 1 1 4.9e-06 5.4e-05 12.1 0.0 38 138 13 123 7 126 0.65 # 8462 # 8842 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.336 1_1 - 387 GCD14 PF08704.5 247 5.3e-05 12.5 0.2 1 1 1.3e-05 0.00014 11.1 0.1 175 241 169 239 119 245 0.60 # 269 # 1429 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.365 1_10 - 127 DUF938 PF06080.7 204 2e-05 14.0 0.0 1 1 2.5e-06 2.8e-05 13.5 0.0 28 139 12 123 4 125 0.72 # 8462 # 8842 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.336 1_10 - 127 Methyltransf_26 PF13659.1 117 2.7e-09 26.9 0.0 1 1 3.4e-10 3.7e-09 26.5 0.0 4 113 13 123 10 125 0.84 # 8462 # 8842 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.336 1_10 - 127 MTS PF05175.9 170 7.3e-10 28.2 0.0 1 1 8.6e-11 9.4e-10 27.9 0.0 33 138 11 123 3 126 0.81 # 8462 # 8842 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.336 1_5 - 510 AAA_27 PF13514.1 1111 2.9e-07 18.2 0.3 1 2 0.031 0.34 -1.9 0.8 133 200 138 200 129 218 0.66 # 4703 # 6232 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=3bp;gc_cont=0.269 1_5 - 510 AAA_27 PF13514.1 1111 2.9e-07 18.2 0.3 2 2 2.6e-08 2.9e-07 18.2 0.3 1056 1101 309 355 293 364 0.89 # 4703 # 6232 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=3bp;gc_cont=0.269 1_10 - 127 NAS PF03059.11 277 5e-05 12.3 0.0 1 1 5.1e-06 5.6e-05 12.1 0.0 149 225 42 119 18 125 0.76 # 8462 # 8842 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.336 1_5 - 510 ABC_tran PF00005.22 137 1.8e-06 18.1 1.9 1 2 9.4e-05 0.001 9.2 0.0 18 51 36 68 28 140 0.82 # 4703 # 6232 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=3bp;gc_cont=0.269 1_5 - 510 ABC_tran PF00005.22 137 1.8e-06 18.1 1.9 2 2 0.00051 0.0056 6.8 1.2 24 135 150 313 150 315 0.56 # 4703 # 6232 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=3bp;gc_cont=0.269 1_10 - 127 Methyltransf_31 PF13847.1 152 4.6e-16 48.5 0.5 1 1 7e-17 7.7e-16 47.8 0.5 4 110 10 125 7 126 0.88 # 8462 # 8842 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.336 1_10 - 127 Methyltransf_23 PF13489.1 161 1.2e-13 40.8 0.0 1 1 1.3e-14 1.4e-13 40.6 0.0 22 114 9 124 3 126 0.69 # 8462 # 8842 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.336 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/ba9abb9a-345c-42c9-ab72-2ed380b029d6 # Target file: checkm_output/bins/pAF001314.2.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pAF001314.2.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/ba9abb9a-345c-42c9-ab72-2ed380b029d6 checkm_output/bins/pAF001314.2.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:35:20 2020 # [ok]