# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_14 - 217 DUF87 PF01935.12 229 1e-05 16.3 0.0 1 1 5.6e-07 1.4e-05 15.9 0.0 24 68 10 51 8 149 0.72 # 8586 # 9236 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.419 1_14 - 217 AAA_22 PF13401.1 131 1.4e-06 19.4 0.0 1 1 1.3e-07 3.2e-06 18.2 0.0 4 96 9 118 5 128 0.74 # 8586 # 9236 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.419 1_14 - 217 AAA_17 PF13207.1 121 3.4e-05 15.6 0.2 1 1 2.3e-06 5.5e-05 14.9 0.3 2 97 12 116 11 185 0.70 # 8586 # 9236 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.419 1_14 - 217 Zeta_toxin PF06414.7 201 5.6e-05 13.2 0.0 1 1 4.3e-06 0.0001 12.3 0.0 19 49 12 42 5 53 0.91 # 8586 # 9236 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.419 1_14 - 217 AAA PF00004.24 132 3.8e-06 18.0 0.0 1 1 3.6e-07 8.5e-06 16.9 0.0 1 122 12 162 12 172 0.79 # 8586 # 9236 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.419 1_14 - 217 Sigma54_activat PF00158.21 168 0.00011 12.6 0.0 1 1 8.4e-06 0.0002 11.7 0.0 19 42 6 29 2 43 0.86 # 8586 # 9236 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.419 1_23 - 168 Pantoate_ligase PF02569.10 280 2e-05 14.3 1.3 1 1 1.5e-06 3.5e-05 13.5 1.4 168 245 25 108 8 136 0.73 # 14222 # 14725 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.371 1_10 - 141 Cons_hypoth95 PF03602.10 183 2.6e-05 14.6 0.0 1 1 1.2e-06 3e-05 14.4 0.0 62 148 32 117 26 126 0.77 # 6267 # 6689 # -1 # ID=1_10;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.381 1_14 - 217 AAA_10 PF12846.2 304 8.1e-11 32.7 0.0 1 2 1.7e-05 0.00041 10.7 0.1 3 41 11 47 9 71 0.83 # 8586 # 9236 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.419 1_14 - 217 AAA_10 PF12846.2 304 8.1e-11 32.7 0.0 2 2 2.2e-08 5.3e-07 20.2 0.0 222 298 111 184 94 188 0.84 # 8586 # 9236 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.419 1_14 - 217 DUF853 PF05872.7 504 1.5e-05 14.3 0.0 1 2 0.00033 0.0079 5.3 0.1 21 61 9 47 2 57 0.82 # 8586 # 9236 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.419 1_14 - 217 DUF853 PF05872.7 504 1.5e-05 14.3 0.0 2 2 0.00011 0.0027 6.9 0.0 289 312 140 163 135 187 0.94 # 8586 # 9236 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.419 1_14 - 217 RNA_helicase PF00910.17 107 5.3e-05 14.3 0.0 1 1 7.3e-06 0.00017 12.7 0.0 1 62 12 77 12 92 0.80 # 8586 # 9236 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.419 1_14 - 217 AAA_5 PF07728.9 139 0.00019 12.1 0.0 1 1 2.8e-05 0.00066 10.3 0.0 1 20 11 30 11 41 0.89 # 8586 # 9236 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.419 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/d079b271-4b0e-4b21-9b57-34ec88e8bdbe # Target file: checkm_output/bins/pAE016878.2.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pAE016878.2.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/d079b271-4b0e-4b21-9b57-34ec88e8bdbe checkm_output/bins/pAE016878.2.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:35:17 2020 # [ok]