# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_12 - 709 Mg_chelatase PF01078.16 207 0.00035 12.0 0.0 1 1 1.4e-05 0.00087 10.7 0.0 9 65 488 544 480 604 0.70 # 9752 # 11878 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.289 1_12 - 709 ABC_ATPase PF09818.4 448 5.6e-05 14.0 0.0 1 1 1.6e-06 0.0001 13.2 0.0 304 352 591 640 584 660 0.91 # 9752 # 11878 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.289 1_12 - 709 IstB_IS21 PF01695.12 178 0.00057 11.6 0.1 1 2 0.0006 0.038 5.6 0.0 21 64 478 518 473 524 0.68 # 9752 # 11878 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.289 1_12 - 709 IstB_IS21 PF01695.12 178 0.00057 11.6 0.1 2 2 0.003 0.19 3.4 0.0 105 149 625 668 602 674 0.82 # 9752 # 11878 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.289 3_8 - 266 MipZ PF09140.6 261 8.4e-11 33.6 0.2 1 2 6.2e-11 3.9e-09 28.1 0.1 2 131 3 153 2 174 0.67 # 5208 # 6005 # -1 # ID=3_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.259 3_8 - 266 MipZ PF09140.6 261 8.4e-11 33.6 0.2 2 2 0.033 2.1 -0.5 0.0 208 235 215 242 195 259 0.68 # 5208 # 6005 # -1 # ID=3_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.259 3_8 - 266 YhjQ PF06564.7 244 2.1e-12 39.1 0.0 1 1 4e-14 2.5e-12 38.9 0.0 1 148 1 151 1 208 0.84 # 5208 # 6005 # -1 # ID=3_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.259 3_5 - 127 SSB PF00436.20 104 2.1e-18 58.4 0.2 1 1 4e-20 2.5e-18 58.2 0.2 2 92 7 101 6 118 0.92 # 4050 # 4430 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=13bp;gc_cont=0.307 2_16 - 673 DUF87 PF01935.12 229 4.6e-10 31.9 2.3 1 1 7.2e-12 4.6e-10 31.9 2.3 16 216 263 474 254 486 0.65 # 12366 # 14384 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.312 2_2 - 160 NB-ARC PF00931.17 287 7.3e-09 27.0 0.3 1 1 4.2e-10 8.8e-09 26.8 0.2 22 95 4 78 1 145 0.78 # 189 # 668 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.285 1_6 - 299 NB-ARC PF00931.17 287 5.9e-06 17.5 3.3 1 2 4.7e-07 9.8e-06 16.8 0.7 6 40 20 54 15 62 0.86 # 4428 # 5324 # -1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_6 - 299 NB-ARC PF00931.17 287 5.9e-06 17.5 3.3 2 2 0.038 0.79 0.7 0.1 88 109 139 160 103 192 0.68 # 4428 # 5324 # -1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_12 - 709 NB-ARC PF00931.17 287 0.00052 11.1 1.9 1 1 0.0002 0.0042 8.2 1.9 20 52 502 537 488 703 0.63 # 9752 # 11878 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.289 3_8 - 266 AAA_22 PF13401.1 131 5.6e-06 18.8 0.0 1 1 9.3e-07 1.2e-05 17.8 0.0 14 108 12 107 4 122 0.73 # 5208 # 6005 # -1 # ID=3_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.259 2_16 - 673 AAA_22 PF13401.1 131 1.1e-05 17.8 0.2 1 2 9.1e-05 0.0011 11.3 0.0 6 35 272 301 267 381 0.69 # 12366 # 14384 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.312 2_16 - 673 AAA_22 PF13401.1 131 1.1e-05 17.8 0.2 2 2 0.039 0.49 2.8 0.0 72 108 486 521 415 548 0.75 # 12366 # 14384 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.312 2_2 - 160 AAA_22 PF13401.1 131 4.3e-05 15.9 0.0 1 1 5.5e-06 7e-05 15.3 0.0 7 31 4 28 3 71 0.82 # 189 # 668 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.285 1_6 - 299 AAA_22 PF13401.1 131 0.00021 13.7 3.5 1 1 0.0004 0.005 9.2 3.5 4 123 33 189 29 197 0.56 # 4428 # 5324 # -1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_12 - 709 AAA_22 PF13401.1 131 0.00031 13.1 2.7 1 1 0.0012 0.016 7.6 2.5 6 108 503 653 498 672 0.55 # 9752 # 11878 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.289 2_2 - 160 PRK PF00485.13 194 7.8e-06 17.8 0.2 1 2 2.9e-05 0.0018 10.0 0.1 4 49 6 49 4 78 0.63 # 189 # 668 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.285 2_2 - 160 PRK PF00485.13 194 7.8e-06 17.8 0.2 2 2 0.00033 0.021 6.6 0.0 121 175 75 128 65 140 0.84 # 189 # 668 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.285 3_8 - 266 SRP54 PF00448.17 196 1.6e-05 16.7 0.1 1 2 3.9e-06 0.00025 12.8 0.2 11 39 12 40 2 82 0.86 # 5208 # 6005 # -1 # ID=3_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.259 3_8 - 266 SRP54 PF00448.17 196 1.6e-05 16.7 0.1 2 2 0.014 0.9 1.1 0.0 69 91 106 128 78 133 0.76 # 5208 # 6005 # -1 # ID=3_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.259 1_6 - 299 AAA_15 PF13175.1 415 5.7e-05 14.5 7.0 1 4 9e-07 5.7e-05 14.5 7.0 6 43 17 69 14 81 0.77 # 4428 # 5324 # -1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_6 - 299 AAA_15 PF13175.1 415 5.7e-05 14.5 7.0 2 4 0.024 1.5 -0.1 0.1 161 205 99 141 82 149 0.78 # 4428 # 5324 # -1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_6 - 299 AAA_15 PF13175.1 415 5.7e-05 14.5 7.0 3 4 0.00024 0.015 6.5 0.3 372 410 155 192 146 194 0.87 # 4428 # 5324 # -1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_6 - 299 AAA_15 PF13175.1 415 5.7e-05 14.5 7.0 4 4 0.057 3.6 -1.3 14.2 215 305 200 286 193 296 0.82 # 4428 # 5324 # -1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 2_2 - 160 AAA_17 PF13207.1 121 4e-11 36.1 0.1 1 1 4.2e-12 6.7e-11 35.4 0.1 1 112 3 103 3 152 0.60 # 189 # 668 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.285 1_12 - 709 AAA_17 PF13207.1 121 2.5e-05 17.4 0.1 1 1 6.8e-06 0.00011 15.3 0.0 2 32 504 546 503 596 0.71 # 9752 # 11878 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.289 1_6 - 299 AAA_17 PF13207.1 121 0.00022 14.3 2.5 1 1 4.1e-05 0.00065 12.8 2.5 1 19 35 53 35 294 0.87 # 4428 # 5324 # -1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 2_16 - 673 AAA_17 PF13207.1 121 0.0082 9.3 5.5 1 1 0.0025 0.039 7.1 3.9 3 16 274 287 272 533 0.88 # 12366 # 14384 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.312 1_6 - 299 AAA_21 PF13304.1 303 3.7e-14 45.5 25.8 1 2 3e-15 9.4e-14 44.2 10.5 2 298 36 193 35 198 0.70 # 4428 # 5324 # -1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_6 - 299 AAA_21 PF13304.1 303 3.7e-14 45.5 25.8 2 2 0.09 2.8 -0.0 7.3 79 154 218 293 201 298 0.61 # 4428 # 5324 # -1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_12 - 709 AAA_21 PF13304.1 303 1.5e-07 23.8 11.2 1 3 0.04 1.3 1.1 3.5 86 191 134 242 46 259 0.81 # 9752 # 11878 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.289 1_12 - 709 AAA_21 PF13304.1 303 1.5e-07 23.8 11.2 2 3 2.7e-06 8.4e-05 14.8 0.4 3 34 505 546 503 588 0.71 # 9752 # 11878 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.289 1_12 - 709 AAA_21 PF13304.1 303 1.5e-07 23.8 11.2 3 3 4.4e-05 0.0014 10.8 0.0 236 292 610 662 585 665 0.88 # 9752 # 11878 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.289 2_2 - 160 Miro PF08477.8 119 4.9e-05 16.1 0.5 1 1 4.1e-06 0.00026 13.8 0.5 1 26 3 41 3 138 0.78 # 189 # 668 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.285 3_8 - 266 MobB PF03205.9 140 3e-05 16.0 0.4 1 1 4.3e-06 9.1e-05 14.5 0.4 10 46 12 46 2 85 0.85 # 5208 # 6005 # -1 # ID=3_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.259 1_6 - 299 MobB PF03205.9 140 0.00012 14.0 0.3 1 1 1.6e-05 0.00033 12.7 0.3 2 25 35 58 34 62 0.87 # 4428 # 5324 # -1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 2_16 - 673 MobB PF03205.9 140 0.00025 13.1 0.0 1 1 5.3e-05 0.0011 10.9 0.0 4 32 274 302 272 307 0.84 # 12366 # 14384 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.312 3_8 - 266 ArsA_ATPase PF02374.10 305 9.3e-12 36.8 0.9 1 1 6.1e-13 3.8e-11 34.7 0.9 1 141 1 135 1 264 0.80 # 5208 # 6005 # -1 # ID=3_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.259 1_6 - 299 T2SE PF00437.15 272 0.0014 9.8 2.4 1 1 1.4e-05 0.00088 10.4 0.6 102 155 8 60 2 69 0.69 # 4428 # 5324 # -1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 2_2 - 160 SKI PF01202.17 158 5.1e-07 21.9 0.3 1 1 2.3e-07 1.4e-05 17.2 0.3 1 155 10 150 10 153 0.73 # 189 # 668 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.285 2_2 - 160 G-alpha PF00503.15 389 1.2e-07 22.9 0.2 1 1 2.2e-09 1.4e-07 22.7 0.2 59 126 2 100 1 151 0.68 # 189 # 668 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.285 1_12 - 709 SMC_N PF02463.14 220 3.8e-09 28.3 0.0 1 1 2.1e-10 6.6e-09 27.5 0.0 119 210 48 679 38 686 0.93 # 9752 # 11878 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.289 1_6 - 299 SMC_N PF02463.14 220 2.9e-06 18.9 9.4 1 2 1.8e-06 5.5e-05 14.7 1.1 24 45 33 54 14 75 0.78 # 4428 # 5324 # -1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_6 - 299 SMC_N PF02463.14 220 2.9e-06 18.9 9.4 2 2 8.4e-05 0.0027 9.2 0.3 149 211 143 207 105 214 0.79 # 4428 # 5324 # -1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 3_8 - 266 VirC1 PF07015.6 231 3e-14 44.9 0.1 1 2 5e-11 3.1e-09 28.4 0.0 1 56 1 56 1 80 0.89 # 5208 # 6005 # -1 # ID=3_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.259 3_8 - 266 VirC1 PF07015.6 231 3e-14 44.9 0.1 2 2 7.8e-07 4.9e-05 14.7 0.0 72 129 109 172 94 253 0.67 # 5208 # 6005 # -1 # ID=3_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.259 3_8 - 266 Fer4_NifH PF00142.13 273 5.2e-09 27.9 0.7 1 2 3.2e-10 2e-08 25.9 0.1 8 74 10 76 2 85 0.93 # 5208 # 6005 # -1 # ID=3_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.259 3_8 - 266 Fer4_NifH PF00142.13 273 5.2e-09 27.9 0.7 2 2 0.025 1.6 0.0 0.1 202 233 212 243 183 261 0.64 # 5208 # 6005 # -1 # ID=3_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.259 2_4 - 151 Ribosomal_L5 PF00281.14 56 0.00043 12.4 2.1 1 2 0.012 0.79 1.9 0.2 8 27 59 80 55 87 0.69 # 1528 # 1980 # 1 # ID=2_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.283 2_4 - 151 Ribosomal_L5 PF00281.14 56 0.00043 12.4 2.1 2 2 3.9e-05 0.0024 10.0 0.1 30 55 100 125 92 126 0.89 # 1528 # 1980 # 1 # ID=2_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.283 2_16 - 673 AAA_16 PF13191.1 185 2.7e-05 16.4 0.0 1 2 0.00015 0.0032 9.7 0.0 24 50 270 297 259 371 0.80 # 12366 # 14384 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.312 2_16 - 673 AAA_16 PF13191.1 185 2.7e-05 16.4 0.0 2 2 0.0074 0.15 4.2 0.0 114 162 466 511 404 528 0.82 # 12366 # 14384 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.312 2_2 - 160 AAA_16 PF13191.1 185 2.9e-05 16.4 0.0 1 1 1.9e-06 4.1e-05 15.9 0.0 27 51 4 28 3 54 0.84 # 189 # 668 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.285 1_6 - 299 AAA_16 PF13191.1 185 0.00022 13.5 0.3 1 1 2.9e-05 0.0006 12.1 0.3 18 52 27 61 18 160 0.77 # 4428 # 5324 # -1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_6 - 299 AAA_23 PF13476.1 202 0.00031 13.3 27.5 1 1 3.5e-05 0.0022 10.6 27.5 14 199 25 291 16 294 0.61 # 4428 # 5324 # -1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 2_2 - 160 AAA_18 PF13238.1 129 6.3e-13 41.4 0.4 1 1 4.6e-14 9.7e-13 40.8 0.4 1 121 4 117 4 127 0.70 # 189 # 668 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.285 1_12 - 709 AAA_18 PF13238.1 129 9.1e-06 18.3 0.1 1 1 2.3e-06 4.8e-05 16.0 0.0 1 23 504 536 504 585 0.79 # 9752 # 11878 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.289 1_6 - 299 AAA_18 PF13238.1 129 0.057 6.0 10.2 1 2 0.0049 0.1 5.2 5.9 1 19 36 54 36 239 0.82 # 4428 # 5324 # -1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_6 - 299 AAA_18 PF13238.1 129 0.057 6.0 10.2 2 2 0.056 1.2 1.8 0.7 34 76 215 254 189 294 0.61 # 4428 # 5324 # -1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 3_8 - 266 CbiA PF01656.18 195 2.9e-29 94.1 0.1 1 1 5.8e-31 3.7e-29 93.8 0.1 1 161 4 198 4 227 0.74 # 5208 # 6005 # -1 # ID=3_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.259 2_16 - 673 KaiC PF06745.8 227 0.0012 10.2 3.6 1 1 1.2e-05 0.00078 10.8 0.4 19 116 270 365 255 392 0.78 # 12366 # 14384 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.312 2_2 - 160 AAA_14 PF13173.1 128 3.2e-07 22.6 0.7 1 1 2.7e-08 5.7e-07 21.8 0.7 5 57 4 60 2 151 0.81 # 189 # 668 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.285 2_16 - 673 AAA_14 PF13173.1 128 9.9e-06 17.8 6.4 1 2 3.2e-06 6.6e-05 15.1 0.4 3 82 271 372 269 404 0.67 # 12366 # 14384 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.312 2_16 - 673 AAA_14 PF13173.1 128 9.9e-06 17.8 6.4 2 2 0.011 0.23 3.7 0.1 32 85 463 526 435 564 0.57 # 12366 # 14384 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.312 1_6 - 299 AAA_14 PF13173.1 128 0.0046 9.1 9.8 1 3 0.00016 0.0033 9.6 0.1 3 23 34 54 32 78 0.82 # 4428 # 5324 # -1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_6 - 299 AAA_14 PF13173.1 128 0.0046 9.1 9.8 2 3 0.022 0.46 2.7 0.1 58 111 149 205 105 222 0.55 # 4428 # 5324 # -1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_6 - 299 AAA_14 PF13173.1 128 0.0046 9.1 9.8 3 3 0.089 1.9 0.7 2.4 14 73 210 265 206 294 0.46 # 4428 # 5324 # -1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_12 - 709 AAA_29 PF13555.1 62 4.8e-06 18.4 0.3 1 1 7e-07 1.1e-05 17.2 0.3 17 55 496 534 489 536 0.83 # 9752 # 11878 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.289 2_2 - 160 AAA_29 PF13555.1 62 8.2e-06 17.6 0.4 1 1 1.1e-06 1.7e-05 16.6 0.4 26 40 4 18 1 22 0.90 # 189 # 668 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.285 1_6 - 299 AAA_29 PF13555.1 62 3.4e-05 15.6 0.4 1 1 4.2e-06 6.6e-05 14.7 0.4 25 44 35 54 22 64 0.79 # 4428 # 5324 # -1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 2_16 - 673 AAA_29 PF13555.1 62 0.0005 11.9 0.1 1 1 0.00011 0.0017 10.2 0.0 24 40 271 287 262 297 0.80 # 12366 # 14384 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.312 1_6 - 299 AAA PF00004.24 132 1e-05 18.0 2.7 1 1 1.5e-05 0.00046 12.7 2.7 3 116 38 238 36 282 0.71 # 4428 # 5324 # -1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 2_2 - 160 AAA PF00004.24 132 7e-05 15.3 0.0 1 1 5e-06 0.00016 14.2 0.0 1 54 4 58 4 68 0.67 # 189 # 668 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.285 2_16 - 673 TK PF00265.13 176 4.4e-05 15.3 0.9 1 2 4.7e-06 0.0003 12.6 0.2 5 69 274 338 271 387 0.64 # 12366 # 14384 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.312 2_16 - 673 TK PF00265.13 176 4.4e-05 15.3 0.9 2 2 0.042 2.6 -0.2 0.0 66 89 489 512 466 525 0.65 # 12366 # 14384 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.312 2_2 - 160 MMR_HSR1 PF01926.18 116 4.4e-05 15.7 0.7 1 1 1.6e-06 0.0001 14.5 0.7 1 22 3 24 3 156 0.80 # 189 # 668 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.285 2_2 - 160 DUF258 PF03193.11 161 8.7e-06 17.2 0.0 1 1 4e-07 1.2e-05 16.7 0.0 39 62 5 28 2 76 0.87 # 189 # 668 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.285 1_12 - 709 DUF258 PF03193.11 161 0.00025 12.5 0.0 1 1 1.6e-05 0.0005 11.5 0.0 22 56 487 522 473 534 0.83 # 9752 # 11878 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.289 2_10 - 531 TraG-D_C PF12696.2 128 1.1e-42 137.3 0.1 1 1 3.4e-44 1.1e-42 137.3 0.1 2 128 282 405 281 405 0.91 # 6764 # 8356 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 2_16 - 673 TraG-D_C PF12696.2 128 3.8e-05 15.8 0.8 1 1 1.1e-05 0.00034 12.8 0.8 16 100 519 633 502 662 0.64 # 12366 # 14384 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.312 3_8 - 266 AAA_31 PF13614.1 157 1.4e-11 36.9 0.1 1 1 6.9e-13 4.4e-11 35.2 0.1 1 134 2 137 2 154 0.75 # 5208 # 6005 # -1 # ID=3_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.259 2_2 - 160 NTPase_1 PF03266.10 168 2.9e-07 22.6 0.0 1 2 5.6e-08 3.5e-06 19.0 0.0 1 34 3 37 3 57 0.79 # 189 # 668 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.285 2_2 - 160 NTPase_1 PF03266.10 168 2.9e-07 22.6 0.0 2 2 0.014 0.87 1.5 0.1 57 104 96 148 90 150 0.82 # 189 # 668 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.285 2_2 - 160 AAA_33 PF13671.1 143 3.9e-06 19.1 0.2 1 1 1.7e-05 0.00052 12.2 0.2 2 23 4 25 4 126 0.73 # 189 # 668 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.285 1_12 - 709 AAA_33 PF13671.1 143 0.00079 11.6 0.5 1 1 0.00012 0.0037 9.4 0.4 2 17 504 519 503 533 0.87 # 9752 # 11878 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.289 1_12 - 709 AAA_30 PF13604.1 196 0.00084 11.2 0.0 1 1 8.3e-05 0.0026 9.6 0.0 7 50 488 533 482 663 0.66 # 9752 # 11878 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.289 1_6 - 299 AAA_30 PF13604.1 196 0.00091 11.1 0.1 1 1 5.4e-05 0.0017 10.2 0.1 17 42 32 57 23 66 0.81 # 4428 # 5324 # -1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 2_16 - 673 FtsK_SpoIIIE PF01580.13 205 4.5e-06 18.5 0.0 1 1 3e-07 1.9e-05 16.4 0.0 39 81 267 309 252 435 0.80 # 12366 # 14384 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.312 1_12 - 709 ABC_tran PF00005.22 137 4.5e-36 116.4 0.1 1 1 3.6e-37 7.6e-36 115.7 0.1 1 137 491 639 491 639 0.87 # 9752 # 11878 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.289 1_6 - 299 ABC_tran PF00005.22 137 7.9e-29 93.0 1.0 1 1 7.3e-30 1.5e-28 92.0 0.1 1 137 23 163 23 163 0.95 # 4428 # 5324 # -1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 2_2 - 160 ABC_tran PF00005.22 137 2.1e-08 26.8 0.0 1 1 1.3e-09 2.7e-08 26.5 0.0 13 82 3 120 2 157 0.74 # 189 # 668 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.285 2_2 - 160 TIGR03263 TIGR03263 180 3.5e-05 15.4 1.7 1 2 1.2e-05 0.00077 11.1 0.1 4 24 4 24 2 32 0.83 # 189 # 668 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.285 2_2 - 160 TIGR03263 TIGR03263 180 3.5e-05 15.4 1.7 2 2 0.0018 0.11 4.0 0.2 107 167 75 140 51 152 0.69 # 189 # 668 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.285 2_16 - 673 AAA_10 PF12846.2 304 4e-56 182.8 1.2 1 1 1.3e-57 4e-56 182.8 1.2 1 301 270 586 270 589 0.90 # 12366 # 14384 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.312 2_10 - 531 AAA_10 PF12846.2 304 1.8e-16 52.6 0.2 1 1 7.9e-18 2.5e-16 52.2 0.2 1 302 23 362 23 364 0.73 # 6764 # 8356 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_12 - 709 SbcCD_C PF13558.1 90 2.1e-06 19.9 0.0 1 1 6.6e-07 4.1e-05 15.7 0.0 2 89 579 654 578 655 0.76 # 9752 # 11878 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.289 1_15 - 845 ResIII PF04851.10 184 3.2e-11 35.6 3.5 1 1 1.4e-12 4.3e-11 35.2 0.0 3 84 34 116 32 183 0.82 # 16610 # 19144 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.311 1_6 - 299 ResIII PF04851.10 184 0.0024 9.9 5.4 1 2 1.7e-05 0.00054 12.0 0.3 22 69 20 84 6 179 0.69 # 4428 # 5324 # -1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_6 - 299 ResIII PF04851.10 184 0.0024 9.9 5.4 2 2 0.095 3 -0.1 0.7 45 92 193 236 184 291 0.53 # 4428 # 5324 # -1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_15 - 845 DEAD PF00270.24 169 4.8e-13 41.2 0.0 1 1 4.5e-14 2.9e-12 38.7 0.0 3 138 38 168 36 186 0.77 # 16610 # 19144 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.311 2_2 - 160 DUF815 PF05673.8 250 1.3e-05 16.4 0.0 1 1 3.4e-07 2.1e-05 15.7 0.0 55 112 3 67 1 71 0.82 # 189 # 668 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.285 2_10 - 531 TrwB_AAD_bind PF10412.4 386 3.7e-38 123.3 0.1 1 1 5.8e-39 1.2e-37 121.6 0.1 13 381 21 419 14 423 0.79 # 6764 # 8356 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 2_16 - 673 TrwB_AAD_bind PF10412.4 386 2.5e-07 21.8 0.2 1 2 2.1e-05 0.00045 11.1 0.0 14 56 269 311 257 316 0.74 # 12366 # 14384 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.312 2_16 - 673 TrwB_AAD_bind PF10412.4 386 2.5e-07 21.8 0.2 2 2 0.00016 0.0033 8.3 0.0 237 320 493 583 481 662 0.83 # 12366 # 14384 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.312 1_6 - 299 TrwB_AAD_bind PF10412.4 386 2.5e-05 15.2 0.3 1 2 7.4e-05 0.0015 9.3 0.2 15 40 33 58 22 65 0.81 # 4428 # 5324 # -1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_6 - 299 TrwB_AAD_bind PF10412.4 386 2.5e-05 15.2 0.3 2 2 0.0042 0.089 3.5 0.0 254 288 166 200 150 204 0.85 # 4428 # 5324 # -1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 2_10 - 531 T4SS-DNA_transf PF02534.9 469 3.1e-150 493.0 8.0 1 1 4.9e-152 3.1e-150 493.0 8.0 46 467 25 452 6 454 0.97 # 6764 # 8356 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_6 - 299 ArgK PF03308.11 267 4.7e-05 14.5 0.2 1 1 1.4e-06 8.7e-05 13.6 0.2 14 52 18 56 7 68 0.83 # 4428 # 5324 # -1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 2_2 - 160 RNA_helicase PF00910.17 107 9.4e-06 18.1 0.3 1 1 4.1e-07 2.6e-05 16.7 0.3 1 41 4 45 4 88 0.87 # 189 # 668 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.285 1_6 - 299 UPF0079 PF02367.12 123 0.0002 13.3 0.1 1 1 5.9e-06 0.00037 12.4 0.1 12 45 30 63 19 75 0.82 # 4428 # 5324 # -1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_6 - 299 NACHT PF05729.7 166 0.0008 11.3 0.2 1 3 1.3e-05 0.0008 11.3 0.2 3 24 36 57 34 71 0.87 # 4428 # 5324 # -1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_6 - 299 NACHT PF05729.7 166 0.0008 11.3 0.2 2 3 0.056 3.5 -0.5 0.2 74 88 145 159 111 245 0.63 # 4428 # 5324 # -1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_6 - 299 NACHT PF05729.7 166 0.0008 11.3 0.2 3 3 0.082 5.2 -1.1 0.1 81 97 211 241 170 276 0.54 # 4428 # 5324 # -1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 2_2 - 160 AAA_25 PF13481.1 194 0.0003 12.4 0.0 1 1 1.5e-05 0.00048 11.8 0.0 36 58 4 26 2 62 0.82 # 189 # 668 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.285 2_16 - 673 AAA_25 PF13481.1 194 0.00047 11.8 0.0 1 1 2.8e-05 0.00087 11.0 0.0 31 59 268 297 241 383 0.75 # 12366 # 14384 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.312 1_15 - 845 Helicase_C_2 PF13307.1 167 1.4e-13 43.4 0.0 1 1 7.4e-15 4.7e-13 41.7 0.0 46 149 376 472 343 486 0.77 # 16610 # 19144 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.311 2_2 - 160 AAA_5 PF07728.9 139 0.00021 13.3 0.0 1 1 6.5e-06 0.00041 12.4 0.0 2 23 4 25 3 31 0.89 # 189 # 668 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.285 1_12 - 709 APS_kinase PF01583.15 157 0.00053 11.9 0.0 1 1 3.2e-05 0.001 11.0 0.0 2 44 501 542 500 568 0.77 # 9752 # 11878 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.289 2_2 - 160 APS_kinase PF01583.15 157 0.00054 11.9 0.2 1 1 2.5e-05 0.00079 11.4 0.2 4 25 3 24 1 65 0.88 # 189 # 668 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.285 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/673c307f-b2a0-4c62-ac0c-adb02c054710 # Target file: checkm_output/bins/pAE001272.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pAE001272.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/673c307f-b2a0-4c62-ac0c-adb02c054710 checkm_output/bins/pAE001272.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:35:17 2020 # [ok]