# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_8 - 1031 UPF0020 PF01170.13 180 1.8e-07 21.5 0.0 1 2 1.5e-06 3e-05 14.3 0.0 16 78 326 397 314 401 0.76 # 6514 # 9606 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.518 1_8 - 1031 UPF0020 PF01170.13 180 1.8e-07 21.5 0.0 2 2 0.0025 0.05 3.8 0.0 101 136 552 587 535 613 0.76 # 6514 # 9606 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.518 1_4 - 200 MipZ PF09140.6 261 5.7e-09 26.0 0.7 1 2 7.8e-08 1.6e-06 18.0 0.2 3 41 4 42 2 57 0.88 # 3018 # 3617 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.572 1_4 - 200 MipZ PF09140.6 261 5.7e-09 26.0 0.7 2 2 0.00027 0.0055 6.4 0.0 97 144 77 125 63 152 0.81 # 3018 # 3617 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.572 1_12 - 1165 UvrD_C_2 PF13538.1 104 2.9e-06 18.1 0.2 1 1 6.4e-07 1.3e-05 16.0 0.2 3 103 714 821 712 822 0.74 # 12931 # 16425 # -1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_12 - 1165 AAA_22 PF13401.1 131 7.1e-06 16.9 3.3 1 1 1.1e-06 2.2e-05 15.2 0.0 7 125 467 580 461 584 0.61 # 12931 # 16425 # -1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_12 - 1165 PhoH PF02562.11 205 6.8e-06 16.0 0.1 1 2 0.0006 0.012 5.4 0.1 6 40 449 484 446 529 0.71 # 12931 # 16425 # -1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_12 - 1165 PhoH PF02562.11 205 6.8e-06 16.0 0.1 2 2 0.0001 0.002 8.0 0.0 120 163 544 588 527 616 0.82 # 12931 # 16425 # -1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_4 - 200 Methyltransf_24 PF13578.1 106 9.4e-05 13.9 0.0 1 1 9.6e-06 0.00019 12.9 0.0 7 86 15 95 11 106 0.74 # 3018 # 3617 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.572 1_4 - 200 VirC1 PF07015.6 231 3.2e-16 49.7 0.2 1 1 3.9e-17 7.9e-16 48.4 0.2 1 124 1 119 1 127 0.84 # 3018 # 3617 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.572 1_12 - 1165 AAA_16 PF13191.1 185 0.045 4.3 16.5 1 1 5.3e-06 0.00011 12.9 1.3 15 85 455 534 450 706 0.80 # 12931 # 16425 # -1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_4 - 200 CbiA PF01656.18 195 9.9e-23 71.1 0.7 1 1 1.4e-23 2.7e-22 69.7 0.7 2 193 5 169 4 171 0.74 # 3018 # 3617 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.572 1_8 - 1031 N6_Mtase PF02384.11 311 6.9e-16 48.7 0.0 1 2 2.1e-13 4.1e-12 36.3 0.0 2 99 297 402 296 410 0.85 # 6514 # 9606 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.518 1_8 - 1031 N6_Mtase PF02384.11 311 6.9e-16 48.7 0.0 2 2 2.1e-05 0.00042 10.0 0.0 122 194 554 636 533 638 0.79 # 6514 # 9606 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.518 1_4 - 200 AAA_31 PF13614.1 157 0.00016 12.3 0.1 1 2 0.00016 0.0033 8.0 0.1 9 41 10 42 3 48 0.87 # 3018 # 3617 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.572 1_4 - 200 AAA_31 PF13614.1 157 0.00016 12.3 0.1 2 2 0.01 0.21 2.1 0.0 120 154 81 114 62 117 0.77 # 3018 # 3617 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.572 1_8 - 1031 Methyltransf_26 PF13659.1 117 3e-14 43.7 0.0 1 1 8.4e-15 1.7e-13 41.3 0.0 2 116 341 626 340 627 0.75 # 6514 # 9606 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.518 1_12 - 1165 AAA_30 PF13604.1 196 9.2e-60 192.2 8.5 1 2 4.6e-61 9.2e-60 192.2 8.5 1 195 447 649 447 650 0.96 # 12931 # 16425 # -1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_12 - 1165 AAA_30 PF13604.1 196 9.2e-60 192.2 8.5 2 2 0.099 2 -1.4 0.2 18 83 656 725 651 771 0.63 # 12931 # 16425 # -1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_8 - 1031 Eco57I PF07669.6 106 7.9e-05 13.7 0.0 1 1 9.5e-06 0.00019 12.5 0.0 3 52 558 626 553 642 0.65 # 6514 # 9606 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.518 1_12 - 1165 AAA_19 PF13245.1 76 1.7e-09 28.1 5.2 1 2 1.3e-09 2.5e-08 24.3 1.2 13 74 467 522 454 524 0.72 # 12931 # 16425 # -1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_12 - 1165 AAA_19 PF13245.1 76 1.7e-09 28.1 5.2 2 2 0.0043 0.086 3.4 0.2 38 63 663 694 620 706 0.75 # 12931 # 16425 # -1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_12 - 1165 PIF1 PF05970.9 364 9.5e-07 18.6 0.1 1 1 8.9e-08 1.8e-06 17.7 0.1 1 115 447 556 447 565 0.87 # 12931 # 16425 # -1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/3c6c1e18-8815-4f7b-9eef-b0c909a13b57 # Target file: checkm_output/bins/pAB525231.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pAB525231.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/3c6c1e18-8815-4f7b-9eef-b0c909a13b57 checkm_output/bins/pAB525231.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:35:16 2020 # [ok]