# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 4_1 - 246 Methyltransf_32 PF13679.1 141 3e-06 17.9 0.0 1 1 1.9e-07 4.7e-06 17.3 0.0 12 70 17 68 9 121 0.82 # 18 # 755 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_5 - 288 cobW PF02492.14 178 1.3e-06 18.9 0.1 1 1 7.2e-07 1.8e-05 15.2 0.1 2 101 35 126 34 184 0.59 # 2138 # 3001 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 4_1 - 246 RrnaAD PF00398.15 262 2.8e-74 240.3 6.8 1 1 1.2e-75 3.1e-74 240.2 6.8 3 261 2 242 1 243 0.96 # 18 # 755 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_2 - 299 MipZ PF09140.6 261 1.5e-06 18.3 0.0 1 2 5.8e-05 0.0014 8.6 0.0 2 48 37 83 36 93 0.84 # 643 # 1539 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.317 1_2 - 299 MipZ PF09140.6 261 1.5e-06 18.3 0.0 2 2 0.00012 0.0031 7.5 0.0 81 128 140 184 112 187 0.82 # 643 # 1539 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.317 1_2 - 299 YhjQ PF06564.7 244 3.1e-05 14.3 0.0 1 1 2e-06 5e-05 13.6 0.0 9 153 44 190 36 202 0.77 # 643 # 1539 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.317 4_1 - 246 Methyltransf_18 PF12847.2 112 2.6e-10 31.9 0.0 1 1 1.6e-11 3.9e-10 31.3 0.0 2 74 30 98 29 148 0.87 # 18 # 755 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_5 - 288 AAA_22 PF13401.1 131 0.00013 13.1 0.0 1 1 1.2e-05 0.00031 11.9 0.0 4 88 33 111 30 153 0.77 # 2138 # 3001 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 4_1 - 246 Methyltransf_11 PF08241.7 95 1.4e-05 16.5 0.0 1 1 1.1e-06 2.7e-05 15.6 0.0 2 59 35 92 34 103 0.85 # 18 # 755 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_5 - 288 AAA_17 PF13207.1 121 1.7e-07 23.1 0.0 1 1 1.1e-08 2.9e-07 22.3 0.0 3 78 37 123 36 240 0.71 # 2138 # 3001 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 1_15 - 647 Miro PF08477.8 119 2.4e-07 22.2 0.2 1 1 2.6e-08 6.5e-07 20.9 0.1 7 119 16 136 10 136 0.83 # 9005 # 10945 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.333 1_2 - 299 ArsA_ATPase PF02374.10 305 1.9e-08 24.6 0.1 1 1 1.7e-07 4.3e-06 16.8 0.0 9 137 45 165 36 168 0.69 # 643 # 1539 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.317 4_1 - 246 CMAS PF02353.15 273 3.1e-05 14.1 0.4 1 1 2.5e-06 6.3e-05 13.0 0.0 51 105 18 71 12 105 0.77 # 18 # 755 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_5 - 288 Zeta_toxin PF06414.7 201 1e-58 188.6 0.0 1 1 6.6e-60 1.6e-58 188.0 0.0 4 198 23 214 18 217 0.94 # 2138 # 3001 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 1_5 - 288 AAA_16 PF13191.1 185 3.1e-06 18.2 0.0 1 1 2.3e-07 5.7e-06 17.3 0.0 19 63 28 69 14 139 0.75 # 2138 # 3001 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 1_5 - 288 AAA_23 PF13476.1 202 0.0086 7.3 7.7 1 1 0.008 0.2 2.9 7.5 22 40 36 54 12 273 0.62 # 2138 # 3001 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 1_5 - 288 AAA_18 PF13238.1 129 2e-06 19.1 0.2 1 1 2.1e-07 5.3e-06 17.8 0.0 2 81 37 118 37 141 0.80 # 2138 # 3001 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 1_2 - 299 CbiA PF01656.18 195 9.7e-37 117.2 0.2 1 1 5.6e-38 1.4e-36 116.7 0.2 5 194 43 258 37 259 0.84 # 643 # 1539 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.317 1_15 - 647 TIGR03594 TIGR03594 432 2e-09 27.5 0.8 1 3 0.007 0.17 1.3 0.2 200 232 50 82 2 83 0.62 # 9005 # 10945 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.333 1_15 - 647 TIGR03594 TIGR03594 432 2e-09 27.5 0.8 2 3 1.8e-08 4.5e-07 19.8 0.1 29 121 54 138 45 149 0.86 # 9005 # 10945 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.333 1_15 - 647 TIGR03594 TIGR03594 432 2e-09 27.5 0.8 3 3 0.00077 0.019 4.5 0.0 302 344 199 241 171 257 0.83 # 9005 # 10945 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.333 1_5 - 288 AAA PF00004.24 132 3.5e-06 18.2 0.0 1 1 3.6e-07 9e-06 16.9 0.0 2 38 37 79 36 111 0.76 # 2138 # 3001 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 4_1 - 246 PCMT PF01135.14 210 1.9e-07 21.7 0.0 1 1 1.6e-08 4.1e-07 20.6 0.0 58 122 14 75 2 86 0.83 # 18 # 755 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_15 - 647 MMR_HSR1 PF01926.18 116 1.4e-08 25.7 0.1 1 1 1.4e-09 3.5e-08 24.4 0.1 2 116 11 134 10 134 0.66 # 9005 # 10945 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.333 1_2 - 299 AAA_31 PF13614.1 157 3.7e-06 17.9 1.0 1 1 6.9e-07 1.7e-05 15.7 0.3 9 152 45 188 44 193 0.71 # 643 # 1539 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.317 1_5 - 288 AAA_33 PF13671.1 143 5.3e-08 23.8 0.1 1 1 8.1e-09 2e-07 21.9 0.0 3 108 37 148 36 172 0.82 # 2138 # 3001 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 4_1 - 246 Methyltransf_26 PF13659.1 117 8.5e-09 26.5 0.0 1 1 5.8e-10 1.4e-08 25.7 0.0 2 83 31 106 30 200 0.81 # 18 # 755 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 4_1 - 246 MTS PF05175.9 170 6.7e-07 19.8 0.0 1 1 4.4e-08 1.1e-06 19.1 0.0 24 114 22 109 9 120 0.82 # 18 # 755 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_5 - 288 ABC_tran PF00005.22 137 1.8e-05 16.0 0.2 1 1 1.2e-06 3e-05 15.3 0.2 7 67 29 86 23 273 0.83 # 2138 # 3001 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 1_5 - 288 RuvB_N PF05496.7 234 4.1e-06 16.9 0.0 1 1 2.2e-07 5.5e-06 16.5 0.0 48 165 31 147 4 180 0.79 # 2138 # 3001 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 4_1 - 246 NodS PF05401.6 201 1e-08 25.7 0.0 1 1 6.5e-10 1.6e-08 25.1 0.0 41 120 27 106 7 116 0.85 # 18 # 755 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 4_1 - 246 Methyltransf_31 PF13847.1 152 1.6e-08 25.3 0.1 1 1 8.8e-10 2.2e-08 24.8 0.0 2 79 28 100 27 217 0.84 # 18 # 755 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 4_1 - 246 TRM13 PF05206.9 259 3.4e-05 14.1 0.1 1 1 2.2e-06 5.6e-05 13.4 0.1 4 67 15 78 12 98 0.79 # 18 # 755 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_15 - 647 GTP_EFTU_D2 PF03144.20 74 1.3e-10 32.3 0.0 1 1 1.4e-11 3.6e-10 30.9 0.0 2 62 269 323 268 327 0.91 # 9005 # 10945 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.333 4_1 - 246 DOT1 PF08123.8 205 7.9e-06 16.2 0.2 1 2 8.4e-07 2.1e-05 14.8 0.0 28 88 15 73 11 97 0.78 # 18 # 755 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 4_1 - 246 DOT1 PF08123.8 205 7.9e-06 16.2 0.2 2 2 0.099 2.5 -1.7 0.1 83 119 184 220 168 231 0.51 # 18 # 755 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_5 - 288 CPT PF07931.7 174 9.6e-05 13.0 0.0 1 1 7.4e-06 0.00019 12.1 0.0 5 89 37 116 34 146 0.65 # 2138 # 3001 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 4_1 - 246 TIGR00755 TIGR00755 256 7.7e-44 140.5 2.9 1 1 3.7e-45 9.3e-44 140.2 2.9 5 227 5 221 1 235 0.88 # 18 # 755 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 4_1 - 246 Methyltransf_23 PF13489.1 161 2.4e-07 21.6 0.0 1 1 2.7e-08 6.8e-07 20.1 0.0 7 60 16 85 9 225 0.82 # 18 # 755 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_15 - 647 GTP_EFTU PF00009.22 188 1.2e-60 195.1 0.6 1 1 7.1e-62 1.8e-60 194.5 0.6 2 186 7 243 6 245 0.92 # 9005 # 10945 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.333 1_15 - 647 EFG_IV PF03764.13 120 3e-25 79.1 0.0 1 1 3.3e-26 8.4e-25 77.7 0.0 1 119 421 536 421 537 0.98 # 9005 # 10945 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.333 4_1 - 246 Methyltransf_4 PF02390.12 197 3.8e-05 13.7 0.1 1 1 3e-06 7.6e-05 12.7 0.0 17 51 27 61 3 98 0.74 # 18 # 755 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_5 - 288 AAA_5 PF07728.9 139 9.8e-05 13.1 0.0 1 1 9.4e-06 0.00023 11.8 0.0 2 32 36 66 35 74 0.89 # 2138 # 3001 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/a97e9411-4f42-4f3c-b38d-b9783bf29442 # Target file: checkm_output/bins/pAB290882.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pAB290882.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/a97e9411-4f42-4f3c-b38d-b9783bf29442 checkm_output/bins/pAB290882.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:35:15 2020 # [ok]