# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_8 - 442 AAA PF00004.24 132 6.9e-05 12.9 0.0 1 1 1e-05 0.00011 12.2 0.0 46 92 256 303 177 311 0.59 # 5271 # 6596 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.690 1_8 - 442 FtsK_SpoIIIE PF01580.13 205 5.8e-43 136.5 0.2 1 1 7.9e-44 8.7e-43 135.9 0.2 8 205 144 323 139 323 0.95 # 5271 # 6596 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.690 1_8 - 442 AAA_10 PF12846.2 304 1.8e-05 14.1 0.0 1 2 0.00065 0.0071 5.5 0.0 2 41 175 214 174 234 0.84 # 5271 # 6596 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.690 1_8 - 442 AAA_10 PF12846.2 304 1.8e-05 14.1 0.0 2 2 0.00029 0.0032 6.6 0.0 214 295 255 354 222 358 0.79 # 5271 # 6596 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.690 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/f46c7d4d-3a24-49b1-902e-49535eca925f # Target file: checkm_output/bins/pAB010724.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pAB010724.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f46c7d4d-3a24-49b1-902e-49535eca925f checkm_output/bins/pAB010724.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:35:07 2020 # [ok]