# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_1 - 481 IstB_IS21 PF01695.12 178 4.7e-08 20.6 0.0 1 2 1.1e-06 3.4e-06 14.5 0.0 46 85 32 71 27 84 0.89 # 1 # 1443 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.276 1_1 - 481 IstB_IS21 PF01695.12 178 4.7e-08 20.6 0.0 2 2 0.0048 0.014 2.7 0.0 96 138 108 158 99 167 0.66 # 1 # 1443 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.276 1_1 - 481 CbiA PF01656.18 195 1.1e-05 12.9 0.1 1 2 7.2e-05 0.00022 8.6 0.0 1 28 35 62 35 65 0.90 # 1 # 1443 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.276 1_1 - 481 CbiA PF01656.18 195 1.1e-05 12.9 0.1 2 2 0.012 0.037 1.3 0.0 83 102 108 128 69 190 0.75 # 1 # 1443 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.276 1_1 - 481 KaiC PF06745.8 227 2.7e-07 17.8 0.1 1 2 5.5e-07 1.6e-06 15.3 0.0 16 167 30 178 24 215 0.67 # 1 # 1443 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.276 1_1 - 481 KaiC PF06745.8 227 2.7e-07 17.8 0.1 2 2 0.062 0.19 -1.3 0.0 132 156 328 352 321 358 0.83 # 1 # 1443 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.276 1_1 - 481 AAA PF00004.24 132 9.3e-06 13.9 0.2 1 2 4.8e-05 0.00015 10.0 0.0 2 105 37 166 36 173 0.56 # 1 # 1443 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.276 1_1 - 481 AAA PF00004.24 132 9.3e-06 13.9 0.2 2 2 0.037 0.11 0.7 0.0 57 74 417 436 382 457 0.76 # 1 # 1443 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.276 1_1 - 481 DnaB_C PF03796.10 259 4.1e-07 17.0 0.0 1 2 9.4e-07 2.8e-06 14.3 0.0 13 111 27 130 23 141 0.81 # 1 # 1443 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.276 1_1 - 481 DnaB_C PF03796.10 259 4.1e-07 17.0 0.0 2 2 0.0049 0.015 2.1 0.0 117 185 108 177 96 180 0.76 # 1 # 1443 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.276 1_1 - 481 AAA_25 PF13481.1 194 1.7e-23 71.0 0.0 1 1 1.1e-23 3.2e-23 70.1 0.0 30 193 30 175 27 176 0.89 # 1 # 1443 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.276 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/f023a8a3-3a58-4be4-a42a-03eabcddf4e2 # Target file: checkm_output/bins/pAAFL01000032.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pAAFL01000032.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f023a8a3-3a58-4be4-a42a-03eabcddf4e2 checkm_output/bins/pAAFL01000032.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:35:02 2020 # [ok]