# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_22 - 624 IstB_IS21 PF01695.12 178 0.00028 11.6 0.0 1 1 2.9e-05 0.00089 9.9 0.0 50 74 332 355 322 403 0.82 # 17601 # 19472 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.548 1_22 - 624 AAA_22 PF13401.1 131 4.3e-09 27.9 0.0 1 1 4.1e-10 1.3e-08 26.4 0.0 6 124 331 470 329 475 0.73 # 17601 # 19472 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.548 1_22 - 624 AAA_17 PF13207.1 121 0.00024 13.2 0.0 1 1 2.2e-05 0.00068 11.7 0.0 3 77 333 402 331 455 0.51 # 17601 # 19472 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.548 1_25 - 147 AAA_18 PF13238.1 129 1.2e-07 23.3 0.0 1 1 5.6e-09 1.7e-07 22.8 0.0 48 121 22 98 4 108 0.73 # 21957 # 22397 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.356 1_22 - 624 KaiC PF06745.8 227 1.3e-08 25.4 0.0 1 1 5.8e-09 1.8e-07 21.7 0.0 16 167 326 478 324 511 0.76 # 17601 # 19472 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.548 1_22 - 624 GvpD PF07088.6 484 0.00032 10.3 0.0 1 2 2.3e-05 0.00072 9.1 0.0 9 36 328 355 323 414 0.87 # 17601 # 19472 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.548 1_22 - 624 GvpD PF07088.6 484 0.00032 10.3 0.0 2 2 0.096 3 -2.8 0.0 194 212 398 416 370 429 0.75 # 17601 # 19472 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.548 1_25 - 147 AAA_33 PF13671.1 143 2.7e-08 25.0 0.0 1 1 1.1e-09 3.3e-08 24.8 0.0 53 135 27 108 5 112 0.81 # 21957 # 22397 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.356 1_22 - 624 DnaB_C PF03796.10 259 1.4e-09 28.4 0.0 1 2 3.1e-05 0.00095 9.3 0.0 20 47 330 357 326 365 0.90 # 17601 # 19472 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.548 1_22 - 624 DnaB_C PF03796.10 259 1.4e-09 28.4 0.0 2 2 1.5e-07 4.8e-06 16.8 0.0 104 186 398 478 382 489 0.81 # 17601 # 19472 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.548 1_22 - 624 AAA_19 PF13245.1 76 7.3e-07 20.2 0.1 1 1 1.6e-07 4.9e-06 17.6 0.0 11 37 330 356 328 368 0.86 # 17601 # 19472 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.548 1_22 - 624 DUF2075 PF09848.4 352 0.00026 11.2 0.0 1 1 1.4e-05 0.00043 10.5 0.0 2 26 330 354 329 429 0.88 # 17601 # 19472 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.548 1_22 - 624 AAA_11 PF13086.1 236 7.6e-05 13.6 0.0 1 2 0.0051 0.16 2.7 0.0 47 95 228 271 122 297 0.85 # 17601 # 19472 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.548 1_22 - 624 AAA_11 PF13086.1 236 7.6e-05 13.6 0.0 2 2 7.9e-05 0.0025 8.6 0.0 19 43 331 355 319 484 0.77 # 17601 # 19472 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.548 1_25 - 147 CPT PF07931.7 174 7.2e-09 26.7 0.0 1 1 2.8e-10 8.6e-09 26.5 0.0 59 172 20 137 11 139 0.78 # 21957 # 22397 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.356 1_18 - 81 MRL1 PF13003.2 134 0.00018 12.6 4.4 1 1 6.9e-06 0.00021 12.4 4.4 23 83 12 74 5 79 0.79 # 14660 # 14902 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.305 1_22 - 624 RNA_helicase PF00910.17 107 0.00022 12.7 0.0 1 1 4.1e-05 0.0013 10.2 0.0 2 26 333 357 332 378 0.83 # 17601 # 19472 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.548 1_22 - 624 NACHT PF05729.7 166 2.9e-06 18.3 0.0 1 2 0.028 0.86 0.5 0.0 42 75 5 34 3 44 0.79 # 17601 # 19472 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.548 1_22 - 624 NACHT PF05729.7 166 2.9e-06 18.3 0.0 2 2 1.3e-06 4e-05 14.6 0.0 2 31 331 360 330 430 0.88 # 17601 # 19472 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.548 1_22 - 624 AAA_25 PF13481.1 194 1.2e-31 100.8 0.0 1 1 7.1e-33 2.2e-31 100.0 0.0 10 193 305 475 297 476 0.86 # 17601 # 19472 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.548 1_22 - 624 AAA_5 PF07728.9 139 3.3e-05 14.9 0.0 1 1 3.9e-06 0.00012 13.1 0.0 3 26 333 357 332 405 0.83 # 17601 # 19472 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.548 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/784b9431-0bf0-49e6-bf15-57e1abb46a0a # Target file: checkm_output/bins/pAAFL01000016.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pAAFL01000016.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/784b9431-0bf0-49e6-bf15-57e1abb46a0a checkm_output/bins/pAAFL01000016.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:34:49 2020 # [ok]