# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_4 - 209 DUF258 PF03193.11 161 3.8e-10 30.4 0.1 1 1 2.3e-11 6.8e-10 29.6 0.1 13 67 4 59 1 69 0.88 # 2628 # 3254 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_9 - 203 GerE PF00196.14 58 0.00016 12.2 0.1 1 1 1.1e-05 0.00032 11.3 0.1 11 35 168 192 166 196 0.94 # 6334 # 6942 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_4 - 209 TIGR00157 TIGR00157 247 3.7e-05 14.2 0.1 1 1 1.9e-06 5.8e-05 13.6 0.1 104 144 8 49 2 67 0.79 # 2628 # 3254 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_4 - 209 TIGR01978 TIGR01978 243 1.3e-23 74.5 4.0 1 1 1.7e-24 5e-23 72.6 4.0 2 208 3 195 2 201 0.81 # 2628 # 3254 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_4 - 209 KaiC PF06745.8 227 5.4e-05 13.6 0.4 1 1 3e-06 9e-05 12.8 0.2 15 141 23 148 15 162 0.79 # 2628 # 3254 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_3 - 114 Phage_CI_repr PF07022.8 66 1.1e-07 23.1 0.0 1 1 5e-09 1.5e-07 22.7 0.0 14 62 17 65 5 67 0.85 # 2105 # 2446 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_4 - 209 AAA_18 PF13238.1 129 0.00041 11.9 4.6 1 1 5.7e-05 0.0017 9.9 4.6 3 64 32 120 31 203 0.64 # 2628 # 3254 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_4 - 209 AAA_13 PF13166.1 712 1.6e-07 21.3 5.0 1 2 0.00014 0.0042 6.7 1.8 11 77 23 87 13 132 0.63 # 2628 # 3254 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_4 - 209 AAA_13 PF13166.1 712 1.6e-07 21.3 5.0 2 2 2.3e-07 7e-06 15.9 0.6 499 578 130 198 96 205 0.82 # 2628 # 3254 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_4 - 209 TIGR03598 TIGR03598 186 2.7e-05 14.8 1.0 1 1 1.2e-06 3.7e-05 14.4 0.1 16 44 25 53 14 58 0.82 # 2628 # 3254 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_3 - 114 HTH_Crp_2 PF13545.1 76 7.6e-05 13.7 0.0 1 1 4.4e-06 0.00013 13.0 0.0 29 47 16 34 2 35 0.87 # 2105 # 2446 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_4 - 209 Zeta_toxin PF06414.7 201 3.5e-05 14.2 0.0 1 1 1.7e-06 5e-05 13.7 0.0 14 62 25 74 14 97 0.82 # 2628 # 3254 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_3 - 114 HTH_17 PF12728.2 51 6.6e-05 14.4 0.0 1 1 3.6e-06 0.00011 13.7 0.0 4 21 18 35 16 53 0.86 # 2105 # 2446 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_4 - 209 AAA_22 PF13401.1 131 1.7e-06 19.4 1.0 1 1 1.7e-07 5.2e-06 17.9 1.0 4 122 27 188 24 197 0.70 # 2628 # 3254 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_3 - 114 HTH_19 PF12844.2 64 4.5e-18 56.4 0.1 1 1 2.1e-19 6.2e-18 55.9 0.1 2 61 5 64 4 66 0.96 # 2105 # 2446 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_3 - 114 Sigma70_r4_2 PF08281.7 54 5.5e-05 13.9 0.0 1 1 3.4e-06 0.0001 13.0 0.0 22 45 11 34 9 35 0.91 # 2105 # 2446 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_4 - 209 AAA_23 PF13476.1 202 9.3e-05 14.0 9.8 1 1 2.3e-05 0.0007 11.1 9.8 10 128 17 135 11 184 0.56 # 2628 # 3254 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_3 - 114 HTH_31 PF13560.1 64 2e-13 41.6 0.0 1 1 8.5e-15 2.5e-13 41.3 0.0 2 57 3 57 2 63 0.95 # 2105 # 2446 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_9 - 203 HTH_22 PF13309.1 64 9e-08 23.1 1.2 1 3 0.027 0.82 0.8 0.0 23 38 71 86 62 95 0.84 # 6334 # 6942 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_9 - 203 HTH_22 PF13309.1 64 9e-08 23.1 1.2 2 3 0.00055 0.016 6.2 0.2 2 41 108 147 107 149 0.93 # 6334 # 6942 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_9 - 203 HTH_22 PF13309.1 64 9e-08 23.1 1.2 3 3 4.4e-06 0.00013 12.9 0.0 43 61 176 194 171 195 0.94 # 6334 # 6942 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_3 - 114 HTH_37 PF13744.1 80 2.3e-08 25.0 0.2 1 1 1.1e-09 3.2e-08 24.6 0.2 18 65 2 48 1 63 0.81 # 2105 # 2446 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 6_1 - 168 MULE PF10551.4 93 1e-05 16.9 0.1 1 1 1.2e-06 3.5e-05 15.2 0.0 19 78 98 154 82 159 0.85 # 180 # 683 # -1 # ID=6_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.329 5_1 - 124 Thioredoxin_2 PF13098.1 112 3.9e-10 31.2 0.0 1 1 1.8e-11 5.5e-10 30.7 0.0 4 102 28 112 25 118 0.73 # 336 # 707 # 1 # ID=5_1;partial=00;start_type=TTG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.261 3_1 - 314 HTH_36 PF13730.1 55 5.4e-08 24.2 0.5 1 1 4.3e-09 1.3e-07 23.0 0.5 2 54 31 94 30 95 0.85 # 3 # 944 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.277 1_4 - 209 AAA_17 PF13207.1 121 7.7e-06 18.0 0.3 1 1 1.6e-06 2.5e-05 16.4 0.3 3 58 31 88 30 207 0.73 # 2628 # 3254 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 6_1 - 168 AAA_17 PF13207.1 121 5.1e-05 15.3 0.2 1 1 4.4e-06 6.6e-05 15.0 0.2 23 111 30 126 23 153 0.82 # 180 # 683 # -1 # ID=6_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.329 3_6 - 116 HTH_34 PF13601.1 80 0.00011 13.5 0.2 1 1 5.4e-06 0.00016 12.9 0.2 2 49 44 91 43 96 0.93 # 3200 # 3547 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.253 1_9 - 203 HTH_29 PF13551.1 112 1.4e-06 19.7 0.2 1 1 2.6e-07 7.8e-06 17.3 0.1 4 34 168 197 166 199 0.91 # 6334 # 6942 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 3_6 - 116 HTH_20 PF12840.2 61 1.9e-05 15.7 0.0 1 1 7.7e-07 2.3e-05 15.4 0.0 15 57 48 89 34 93 0.87 # 3200 # 3547 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.253 3_6 - 116 HTH_5 PF01022.15 47 1.2e-17 54.6 1.6 1 1 6.8e-19 2e-17 53.9 1.6 1 45 41 86 41 88 0.95 # 3200 # 3547 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.253 1_4 - 209 AAA_21 PF13304.1 303 1.2e-16 52.7 5.3 1 1 3.3e-16 9.9e-15 46.4 5.3 3 301 31 193 29 195 0.94 # 2628 # 3254 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 6_1 - 168 DDE_Tnp_IS240 PF13610.1 140 3.5e-32 102.5 0.2 1 1 1.9e-33 5.8e-32 101.8 0.2 3 84 78 158 76 164 0.95 # 180 # 683 # -1 # ID=6_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.329 1_9 - 203 HTH_7 PF02796.10 45 9.5e-24 74.3 1.3 1 1 4.2e-25 1.2e-23 74.0 0.2 1 44 147 198 147 199 0.95 # 6334 # 6942 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_4 - 209 SbcCD_C PF13558.1 90 1.6e-05 16.0 0.0 1 1 7.3e-06 0.00022 12.4 0.0 24 88 123 174 102 176 0.79 # 2628 # 3254 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_12 - 163 Peptidase_M50 PF02163.17 192 0.033 4.3 11.1 1 1 0.0036 0.11 2.6 11.1 117 142 35 119 8 124 0.66 # 10239 # 10727 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.188 1_4 - 209 AAA_10 PF12846.2 304 4.5e-05 14.1 0.2 1 1 2.6e-06 7.8e-05 13.3 0.1 3 22 29 48 27 78 0.84 # 2628 # 3254 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_4 - 209 AAA_16 PF13191.1 185 4.1e-05 14.8 0.7 1 1 2.7e-06 8.1e-05 13.8 0.7 24 44 27 46 14 201 0.76 # 2628 # 3254 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_9 - 203 HTH_23 PF13384.1 50 1.6e-09 28.4 0.5 1 1 3.3e-10 3.3e-09 27.5 0.1 4 40 162 198 159 202 0.88 # 6334 # 6942 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_3 - 114 HTH_23 PF13384.1 50 7.6e-08 23.2 0.0 1 1 1.2e-08 1.2e-07 22.5 0.0 8 38 4 36 1 42 0.85 # 2105 # 2446 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 6_1 - 168 HTH_23 PF13384.1 50 7.7e-05 13.6 1.5 1 1 5.1e-05 0.00051 11.0 0.6 29 41 48 60 47 75 0.93 # 180 # 683 # -1 # ID=6_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.329 1_3 - 114 Sigma70_ECF PF07638.6 185 0.0002 12.3 0.0 1 1 8.8e-06 0.00026 11.9 0.0 145 170 9 34 2 42 0.86 # 2105 # 2446 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_1 - 257 TIGR02168 TIGR02168 1181 1.2e-07 20.7 31.7 1 1 4.5e-09 1.3e-07 20.5 31.7 253 434 48 230 19 247 0.83 # 433 # 1203 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.266 1_9 - 203 HTH_11 PF08279.7 55 8e-05 13.5 0.1 1 1 3e-05 0.0003 11.7 0.1 18 34 178 194 166 195 0.80 # 6334 # 6942 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_3 - 114 HTH_11 PF08279.7 55 9.8e-05 13.2 0.1 1 1 1.6e-05 0.00016 12.6 0.1 13 34 14 34 2 34 0.78 # 2105 # 2446 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_1 - 257 HTH_11 PF08279.7 55 0.00022 12.2 1.0 1 1 5.4e-05 0.00054 10.9 0.0 21 40 7 26 3 30 0.87 # 433 # 1203 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.266 1_3 - 114 P22_Cro PF14549.1 60 1e-05 16.5 0.1 1 1 5.6e-07 1.7e-05 15.8 0.1 11 30 17 36 16 44 0.89 # 2105 # 2446 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 6_1 - 168 Arg_repressor PF01316.16 70 0.00018 12.3 0.0 1 1 1.5e-05 0.00044 11.1 0.0 24 49 36 61 31 83 0.74 # 180 # 683 # -1 # ID=6_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.329 1_9 - 203 HTH_28 PF13518.1 52 1.2e-08 26.1 0.1 1 1 3.3e-09 3.3e-08 24.7 0.1 4 34 167 197 166 198 0.94 # 6334 # 6942 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_3 - 114 HTH_28 PF13518.1 52 4.7e-06 17.8 0.1 1 1 8.3e-07 8.3e-06 17.0 0.1 11 32 14 35 3 38 0.84 # 2105 # 2446 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 6_1 - 168 HTH_28 PF13518.1 52 6.1e-05 14.3 0.5 1 1 2.2e-05 0.00022 12.5 0.5 14 36 36 60 23 61 0.83 # 180 # 683 # -1 # ID=6_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.329 1_1 - 257 HlyD PF00529.15 305 0.0031 8.0 14.0 1 1 0.00014 0.0043 7.5 14.0 43 137 106 202 94 228 0.78 # 433 # 1203 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.266 1_4 - 209 Dynamin_N PF00350.18 168 7.9e-05 13.7 2.6 1 1 7.1e-06 0.00021 12.3 2.6 2 35 31 64 31 196 0.64 # 2628 # 3254 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 6_1 - 168 HTH_Tnp_4 PF13613.1 53 0.00024 11.9 0.3 1 1 3e-05 0.00091 10.0 0.3 31 49 48 66 26 69 0.84 # 180 # 683 # -1 # ID=6_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.329 1_4 - 209 MMR_HSR1 PF01926.18 116 4.3e-06 17.9 2.8 1 1 3e-07 8.9e-06 16.9 2.8 3 91 31 134 29 203 0.64 # 2628 # 3254 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_9 - 203 CENP-B_N PF04218.8 53 5.7e-08 23.4 3.1 1 2 0.00037 0.011 6.4 0.3 13 35 117 139 115 142 0.85 # 6334 # 6942 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_9 - 203 CENP-B_N PF04218.8 53 5.7e-08 23.4 3.1 2 2 1.6e-07 4.7e-06 17.2 0.2 14 46 167 199 166 200 0.91 # 6334 # 6942 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_4 - 209 NTPase_1 PF03266.10 168 9.6e-05 13.3 0.3 1 2 0.0012 0.036 5.0 0.0 3 19 31 47 29 57 0.86 # 2628 # 3254 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_4 - 209 NTPase_1 PF03266.10 168 9.6e-05 13.3 0.3 2 2 0.00037 0.011 6.6 0.2 80 135 134 191 104 207 0.74 # 2628 # 3254 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 3_5 - 206 Virul_fac_BrkB PF03631.10 260 0.00046 10.7 23.0 1 2 3.2e-06 9.5e-05 13.0 7.2 164 235 9 79 1 81 0.83 # 2564 # 3181 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.269 3_5 - 206 Virul_fac_BrkB PF03631.10 260 0.00046 10.7 23.0 2 2 0.0018 0.055 3.9 7.8 115 180 135 191 106 193 0.64 # 2564 # 3181 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.269 5_1 - 124 Thioredoxin PF00085.15 104 0.00018 12.5 0.0 1 1 1.8e-05 0.00055 10.9 0.0 28 93 38 114 13 122 0.70 # 336 # 707 # 1 # ID=5_1;partial=00;start_type=TTG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.261 1_4 - 209 AAA_15 PF13175.1 415 3.5e-09 27.3 10.0 1 2 2.8e-06 8.4e-05 12.9 6.6 7 91 11 87 4 110 0.62 # 2628 # 3254 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_4 - 209 AAA_15 PF13175.1 415 3.5e-09 27.3 10.0 2 2 5.3e-07 1.6e-05 15.2 3.5 285 411 82 190 61 194 0.67 # 2628 # 3254 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_4 - 209 FeoB_N PF02421.13 156 1.6e-05 15.4 3.7 1 2 4.3e-05 0.0013 9.2 0.0 3 24 30 51 28 57 0.89 # 2628 # 3254 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_4 - 209 FeoB_N PF02421.13 156 1.6e-05 15.4 3.7 2 2 0.00037 0.011 6.2 1.3 85 131 161 207 129 208 0.78 # 2628 # 3254 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 6_1 - 168 rve PF00665.21 120 1e-13 42.7 0.3 1 1 1e-14 3e-13 41.2 0.1 4 98 74 162 71 166 0.82 # 180 # 683 # -1 # ID=6_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.329 1_3 - 114 HTH_25 PF13413.1 62 5.7e-06 17.2 0.1 1 1 3.1e-07 9.2e-06 16.5 0.1 3 28 8 33 6 41 0.87 # 2105 # 2446 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 6_1 - 168 HTH_Tnp_1 PF01527.15 76 7e-05 14.0 0.4 1 1 4.6e-06 0.00014 13.1 0.2 24 47 35 60 11 75 0.78 # 180 # 683 # -1 # ID=6_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.329 1_3 - 114 Phage_terminase PF10668.4 60 0.00014 12.9 0.4 1 1 6.8e-06 0.0002 12.4 0.4 25 47 18 40 8 46 0.87 # 2105 # 2446 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_9 - 203 HTH_38 PF13936.1 44 7.9e-06 16.7 2.2 1 1 8.3e-07 1.2e-05 16.0 0.2 15 39 170 194 160 195 0.93 # 6334 # 6942 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_3 - 114 HTH_38 PF13936.1 44 5.1e-05 14.1 0.0 1 1 5e-06 7.6e-05 13.5 0.0 12 39 6 34 3 35 0.88 # 2105 # 2446 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_3 - 114 Sigma70_r4 PF04545.11 50 1.2e-05 15.9 0.0 1 1 1.1e-06 1.7e-05 15.4 0.0 15 41 10 36 5 38 0.87 # 2105 # 2446 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_9 - 203 Sigma70_r4 PF04545.11 50 2.1e-05 15.0 0.2 1 1 3.7e-06 5.5e-05 13.7 0.2 9 42 160 197 157 198 0.93 # 6334 # 6942 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_9 - 203 HTH_Tnp_IS630 PF01710.11 120 7.7e-05 13.6 0.1 1 1 6.3e-06 0.00019 12.3 0.1 9 37 166 194 162 201 0.92 # 6334 # 6942 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 3_5 - 206 Cad PF03596.8 191 2.5e-86 279.4 16.8 1 1 9.6e-88 2.9e-86 279.2 16.8 1 191 12 203 12 203 0.99 # 2564 # 3181 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.269 1_9 - 203 HTH_40 PF14493.1 91 4.9e-05 14.8 0.1 1 1 5.4e-06 0.00016 13.1 0.1 7 31 169 193 165 195 0.92 # 6334 # 6942 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_3 - 114 HTH_3 PF01381.17 55 1.3e-19 61.1 0.0 1 1 5.8e-21 1.7e-19 60.7 0.0 1 55 7 61 7 61 0.98 # 2105 # 2446 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 6_1 - 168 DDE_3 PF13358.1 146 3.7e-07 21.2 0.1 1 1 2.1e-08 6.4e-07 20.4 0.1 17 94 73 146 64 158 0.83 # 180 # 683 # -1 # ID=6_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.329 6_1 - 168 DDE_Tnp_IS66 PF03050.9 271 2.7e-09 27.8 0.6 1 1 1.1e-10 3.2e-09 27.5 0.6 14 104 25 109 13 141 0.75 # 180 # 683 # -1 # ID=6_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.329 1_3 - 114 HTH_26 PF13443.1 63 7.9e-09 26.9 0.0 1 1 3.3e-10 9.9e-09 26.6 0.0 8 58 13 62 2 65 0.89 # 2105 # 2446 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 5_1 - 124 Thioredoxin_8 PF13905.1 95 3.9e-06 18.2 0.4 1 2 1.9e-06 5.6e-05 14.5 0.1 1 31 28 58 28 76 0.84 # 336 # 707 # 1 # ID=5_1;partial=00;start_type=TTG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.261 5_1 - 124 Thioredoxin_8 PF13905.1 95 3.9e-06 18.2 0.4 2 2 0.013 0.4 2.1 0.1 67 93 76 104 61 106 0.69 # 336 # 707 # 1 # ID=5_1;partial=00;start_type=TTG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.261 1_4 - 209 ABC_tran PF00005.22 137 1.2e-36 117.3 0.1 1 1 5.4e-38 1.6e-36 116.8 0.1 1 136 17 159 17 160 0.93 # 2628 # 3254 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_4 - 209 SMC_N PF02463.14 220 4.6e-08 23.7 6.0 1 1 3.4e-09 1e-07 22.6 6.0 9 213 12 205 3 208 0.76 # 2628 # 3254 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 5_1 - 124 TraF PF13728.1 215 1.4e-05 15.8 0.0 1 1 5.4e-07 1.6e-05 15.6 0.0 130 194 38 104 17 116 0.84 # 336 # 707 # 1 # ID=5_1;partial=00;start_type=TTG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.261 1_4 - 209 AAA_29 PF13555.1 62 1.7e-07 22.0 0.0 1 1 1e-08 3e-07 21.2 0.0 16 40 21 44 13 48 0.83 # 2628 # 3254 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 3_1 - 314 RepA_N PF06970.6 76 1.7e-35 111.9 4.9 1 1 1.8e-36 5.3e-35 110.4 4.9 1 76 14 89 14 89 0.99 # 3 # 944 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.277 3_5 - 206 Sdh_cyt PF01127.17 121 0.0093 7.1 18.1 1 2 0.00069 0.021 5.9 3.6 27 79 5 59 2 118 0.67 # 2564 # 3181 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.269 3_5 - 206 Sdh_cyt PF01127.17 121 0.0093 7.1 18.1 2 2 0.0014 0.041 5.0 6.7 33 78 144 189 128 192 0.53 # 2564 # 3181 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.269 1_2 - 32 zf-C4_Topoisom PF01396.14 39 4.3e-06 17.5 0.5 1 1 1.9e-07 5.7e-06 17.1 0.5 3 18 7 22 6 23 0.91 # 1307 # 1402 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.260 6_1 - 168 HTH_32 PF13565.1 77 7.7e-06 17.9 0.1 1 1 6e-07 1.8e-05 16.8 0.1 48 76 31 56 13 57 0.85 # 180 # 683 # -1 # ID=6_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.329 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/a711e015-0294-488f-b84e-7f1838698e92 # Target file: checkm_output/bins/pGCA_900017775.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_900017775.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/a711e015-0294-488f-b84e-7f1838698e92 checkm_output/bins/pGCA_900017775.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Staphylococcus/training_20210111 # Date: Mon Jan 11 14:55:39 2021 # [ok]