# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_28 - 204 GerE PF00196.14 58 0.00017 12.3 0.1 1 1 1e-05 0.00032 11.4 0.1 11 35 168 192 166 197 0.93 # 23831 # 24442 # 1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_25 - 586 Peptidase_M56 PF05569.6 299 1.2e-94 307.9 14.2 1 1 3.6e-96 1.2e-94 307.9 14.2 2 299 4 298 3 298 0.99 # 20735 # 22492 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.263 1_29 - 140 MarR_2 PF12802.2 62 6.7e-14 42.7 0.0 1 1 5.4e-15 8.6e-14 42.4 0.0 1 61 29 87 29 88 0.95 # 24795 # 25214 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.264 1_27 - 193 MarR_2 PF12802.2 62 1.5e-05 16.0 0.0 1 2 0.01 0.16 3.1 0.1 23 45 112 134 90 137 0.88 # 23126 # 23704 # 1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 1_27 - 193 MarR_2 PF12802.2 62 1.5e-05 16.0 0.0 2 2 4.5e-05 0.00073 10.6 0.0 7 45 149 184 144 187 0.89 # 23126 # 23704 # 1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 1_29 - 140 HTH_Crp_2 PF13545.1 76 0.00019 12.6 0.0 1 1 9.9e-06 0.00032 11.8 0.0 32 67 51 91 42 99 0.82 # 24795 # 25214 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.264 1_27 - 193 Mga PF05043.8 87 1.3e-07 23.2 0.7 1 2 0.0065 0.21 3.3 0.1 24 52 104 132 65 137 0.82 # 23126 # 23704 # 1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 1_27 - 193 Mga PF05043.8 87 1.3e-07 23.2 0.7 2 2 1.8e-07 5.8e-06 17.9 0.1 16 56 147 186 143 187 0.94 # 23126 # 23704 # 1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 1_27 - 193 HTH_22 PF13309.1 64 8.5e-08 23.3 0.5 1 1 4.8e-08 7.7e-07 20.2 0.1 12 64 136 182 128 182 0.82 # 23126 # 23704 # 1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 1_28 - 204 HTH_22 PF13309.1 64 1.9e-07 22.1 0.9 1 3 0.055 0.88 0.8 0.0 23 38 71 86 62 95 0.84 # 23831 # 24442 # 1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_28 - 204 HTH_22 PF13309.1 64 1.9e-07 22.1 0.9 2 3 0.0028 0.045 4.9 0.1 3 41 109 147 107 149 0.93 # 23831 # 24442 # 1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_28 - 204 HTH_22 PF13309.1 64 1.9e-07 22.1 0.9 3 3 8.9e-06 0.00014 12.9 0.0 43 61 176 194 171 195 0.94 # 23831 # 24442 # 1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_14 - 315 HTH_36 PF13730.1 55 5.8e-08 24.2 0.5 1 1 8.6e-09 1.4e-07 23.0 0.5 2 54 32 95 31 96 0.85 # 10824 # 11768 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.279 1_27 - 193 HTH_36 PF13730.1 55 8.7e-05 14.0 0.1 1 1 1.1e-05 0.00018 13.0 0.1 28 49 163 184 145 186 0.93 # 23126 # 23704 # 1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 1_26 - 127 Penicillinase_R PF03965.11 115 1.2e-37 119.8 1.3 1 1 8.6e-39 1.4e-37 119.7 1.3 1 114 8 121 8 122 0.99 # 22482 # 22862 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.257 1_29 - 140 Penicillinase_R PF03965.11 115 0.00015 13.2 0.0 1 1 1.3e-05 0.00021 12.7 0.0 1 59 31 85 31 130 0.80 # 24795 # 25214 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.264 1_29 - 140 B-block_TFIIIC PF04182.7 75 1.9e-05 15.8 0.7 1 2 0.0075 0.24 2.7 0.1 29 48 12 31 3 47 0.83 # 24795 # 25214 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.264 1_29 - 140 B-block_TFIIIC PF04182.7 75 1.9e-05 15.8 0.7 2 2 1.1e-05 0.00034 11.8 0.1 25 54 54 83 47 113 0.82 # 24795 # 25214 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.264 1_30 - 324 ADH_N PF08240.7 109 1.6e-11 35.3 0.0 1 2 4.2e-11 1.3e-09 29.1 0.0 2 61 29 86 28 91 0.90 # 25338 # 26309 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_30 - 324 ADH_N PF08240.7 109 1.6e-11 35.3 0.0 2 2 0.0023 0.075 4.2 0.0 87 109 91 113 87 113 0.86 # 25338 # 26309 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_9 - 116 HTH_34 PF13601.1 80 0.00012 13.5 0.2 1 1 1.1e-05 0.00017 12.9 0.2 2 49 44 91 43 96 0.93 # 8226 # 8573 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.256 1_29 - 140 HTH_34 PF13601.1 80 0.00012 13.5 0.1 1 1 1.4e-05 0.00023 12.5 0.1 4 63 37 95 34 106 0.87 # 24795 # 25214 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.264 1_28 - 204 HTH_29 PF13551.1 112 9.7e-07 20.3 0.3 1 1 5.1e-07 8.1e-06 17.3 0.0 4 34 168 197 166 199 0.91 # 23831 # 24442 # 1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_27 - 193 HTH_29 PF13551.1 112 2.4e-06 19.0 0.4 1 2 0.018 0.29 2.7 0.2 32 69 121 156 118 159 0.73 # 23126 # 23704 # 1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 1_27 - 193 HTH_29 PF13551.1 112 2.4e-06 19.0 0.4 2 2 3.1e-06 4.9e-05 14.8 0.0 7 39 156 187 151 190 0.91 # 23126 # 23704 # 1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 1_29 - 140 MarR PF01047.17 59 5.6e-15 46.2 0.0 1 1 7.8e-16 8.3e-15 45.7 0.0 1 59 31 89 31 89 0.98 # 24795 # 25214 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.264 1_26 - 127 MarR PF01047.17 59 4.9e-09 27.2 0.1 1 1 8e-10 8.5e-09 26.4 0.1 1 54 8 65 8 65 0.97 # 22482 # 22862 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.257 1_27 - 193 MarR PF01047.17 59 0.0002 12.4 0.2 1 1 4.9e-05 0.00053 11.1 0.0 1 41 145 184 145 188 0.89 # 23126 # 23704 # 1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 1_9 - 116 HTH_20 PF12840.2 61 2e-05 15.7 0.0 1 1 7.7e-07 2.5e-05 15.4 0.0 15 57 48 89 34 93 0.87 # 8226 # 8573 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.256 1_27 - 193 RuvB_C PF05491.8 76 0.00025 12.0 0.4 1 2 0.038 1.2 0.2 0.1 55 67 121 133 117 139 0.82 # 23126 # 23704 # 1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 1_27 - 193 RuvB_C PF05491.8 76 0.00025 12.0 0.4 2 2 8.6e-05 0.0028 8.7 0.0 6 43 145 178 142 182 0.86 # 23126 # 23704 # 1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 1_9 - 116 HTH_5 PF01022.15 47 1.3e-17 54.6 1.6 1 1 1.4e-18 2.2e-17 53.9 1.6 1 45 41 86 41 88 0.95 # 8226 # 8573 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.256 1_27 - 193 HTH_5 PF01022.15 47 0.00012 13.1 0.0 1 1 1.4e-05 0.00023 12.2 0.0 5 42 150 187 147 188 0.86 # 23126 # 23704 # 1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 1_30 - 324 TIGR02817 TIGR02817 336 2e-18 57.8 0.0 1 1 9.2e-20 2.9e-18 57.3 0.0 26 215 25 218 9 231 0.85 # 25338 # 26309 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_27 - 193 Terminase_5 PF06056.7 58 0.00021 12.2 0.1 1 1 1.2e-05 0.0004 11.3 0.1 7 36 154 183 153 189 0.91 # 23126 # 23704 # 1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 1_27 - 193 HTH_24 PF13412.1 48 2.5e-10 31.0 0.2 1 1 2.7e-11 4.3e-10 30.2 0.2 1 41 145 184 145 188 0.96 # 23126 # 23704 # 1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 1_29 - 140 HTH_24 PF13412.1 48 6e-05 13.8 0.0 1 1 6.9e-06 0.00011 12.9 0.0 8 48 38 78 32 78 0.89 # 24795 # 25214 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.264 1_27 - 193 HTH_AsnC-type PF13404.1 42 0.00011 13.0 0.0 1 1 7.3e-06 0.00023 12.0 0.0 3 41 147 184 145 185 0.87 # 23126 # 23704 # 1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 1_27 - 193 HTH_IclR PF09339.5 52 8.8e-05 13.4 0.0 1 1 6.7e-06 0.00021 12.2 0.0 7 43 151 185 150 188 0.85 # 23126 # 23704 # 1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 1_28 - 204 HTH_7 PF02796.10 45 1.6e-23 73.7 1.3 1 1 1.2e-24 1.9e-23 73.4 0.2 1 44 147 198 147 199 0.95 # 23831 # 24442 # 1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_27 - 193 HTH_7 PF02796.10 45 2.8e-20 63.3 0.2 1 1 3.4e-21 5.4e-20 62.4 0.2 1 44 140 183 140 184 0.98 # 23126 # 23704 # 1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 1_29 - 140 DUF2250 PF10007.4 93 8.9e-05 13.7 0.0 1 1 4.4e-06 0.00014 13.1 0.0 7 58 32 83 26 113 0.89 # 24795 # 25214 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.264 1_27 - 193 HTH_DeoR PF08220.7 57 2.5e-05 15.1 0.0 1 1 3.5e-06 5.6e-05 14.0 0.0 16 41 162 187 149 189 0.83 # 23126 # 23704 # 1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 1_26 - 127 HTH_DeoR PF08220.7 57 0.00026 11.9 0.3 1 1 6.9e-05 0.0011 9.9 0.1 8 46 18 60 14 62 0.76 # 22482 # 22862 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.257 1_7 - 163 Peptidase_M50 PF02163.17 192 0.035 4.3 11.1 1 1 0.0036 0.11 2.6 11.1 117 142 35 119 8 124 0.66 # 6027 # 6515 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.186 1_5 - 346 AAA_14 PF13173.1 128 0.0088 7.3 7.0 1 1 1.8e-05 0.00057 11.1 1.1 19 90 146 224 143 266 0.67 # 3532 # 4569 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.271 1_30 - 324 Epimerase PF01370.16 236 9.8e-05 13.1 0.1 1 1 4.1e-06 0.00013 12.7 0.1 1 39 152 191 152 247 0.82 # 25338 # 26309 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_30 - 324 NmrA PF05368.8 233 4.4e-06 17.4 0.6 1 1 3.2e-07 1e-05 16.1 0.6 1 52 152 205 152 264 0.90 # 25338 # 26309 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_28 - 204 HTH_23 PF13384.1 50 1.9e-09 28.4 0.4 1 1 2.5e-10 4e-09 27.3 0.1 4 39 162 197 159 201 0.89 # 23831 # 24442 # 1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_27 - 193 HTH_23 PF13384.1 50 2.4e-08 24.8 0.0 1 1 3.6e-09 5.7e-08 23.6 0.0 13 42 156 185 150 190 0.86 # 23126 # 23704 # 1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 1_27 - 193 UPF0122 PF04297.9 101 0.0001 13.7 0.0 1 1 8.1e-06 0.00026 12.4 0.0 19 59 146 186 142 190 0.86 # 23126 # 23704 # 1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 1_26 - 127 S-AdoMet_synt_M PF02772.11 120 0.00018 12.8 1.9 1 2 1.4e-05 0.00045 11.5 1.2 64 106 21 62 3 74 0.78 # 22482 # 22862 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.257 1_26 - 127 S-AdoMet_synt_M PF02772.11 120 0.00018 12.8 1.9 2 2 0.045 1.4 0.2 0.0 64 90 89 115 70 126 0.62 # 22482 # 22862 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.257 1_15 - 257 TIGR02168 TIGR02168 1181 1.2e-07 20.7 33.5 1 1 4.5e-09 1.4e-07 20.5 33.5 253 434 48 230 20 247 0.83 # 12212 # 12982 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.268 1_30 - 324 DapB_N PF01113.15 124 3.3e-06 18.3 0.2 1 2 0.042 1.4 0.2 0.0 92 103 121 132 115 142 0.84 # 25338 # 26309 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_30 - 324 DapB_N PF01113.15 124 3.3e-06 18.3 0.2 2 2 1.1e-06 3.5e-05 15.1 0.2 3 97 152 242 150 250 0.78 # 25338 # 26309 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_27 - 193 HTH_11 PF08279.7 55 3.6e-09 27.5 0.1 1 1 7.8e-10 8.4e-09 26.4 0.1 4 41 151 186 147 189 0.81 # 23126 # 23704 # 1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 1_28 - 204 HTH_11 PF08279.7 55 9.7e-05 13.4 0.1 1 1 3e-05 0.00032 11.7 0.1 18 34 178 194 166 195 0.80 # 23831 # 24442 # 1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_15 - 257 HTH_11 PF08279.7 55 0.00014 12.8 0.0 1 1 5.4e-05 0.00058 10.9 0.0 21 40 7 26 3 30 0.87 # 12212 # 12982 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.268 1_28 - 204 HTH_28 PF13518.1 52 1.4e-08 25.9 0.1 1 1 2.6e-09 4.2e-08 24.5 0.1 4 34 167 197 166 198 0.94 # 23831 # 24442 # 1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_27 - 193 HTH_28 PF13518.1 52 1.3e-05 16.5 0.0 1 1 1.9e-06 3.1e-05 15.3 0.0 8 38 156 186 152 189 0.93 # 23126 # 23704 # 1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 1_15 - 257 HlyD PF00529.15 305 0.0032 8.0 14.0 1 1 0.00014 0.0045 7.5 14.0 43 137 106 202 94 228 0.78 # 12212 # 12982 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.268 1_30 - 324 ADH_zinc_N PF00107.21 130 1.6e-17 54.6 0.0 1 1 1.1e-18 3.6e-17 53.5 0.0 1 114 160 267 160 285 0.91 # 25338 # 26309 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_27 - 193 HTH_Tnp_4 PF13613.1 53 0.0002 12.2 0.0 1 1 1.3e-05 0.00042 11.2 0.0 24 43 165 184 159 186 0.88 # 23126 # 23704 # 1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 1_30 - 324 NAD_binding_10 PF13460.1 183 6.3e-06 17.6 0.1 1 1 2.8e-07 9.1e-06 17.1 0.1 1 38 152 192 152 222 0.86 # 25338 # 26309 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_28 - 204 CENP-B_N PF04218.8 53 1.6e-08 25.2 2.8 1 2 0.00037 0.012 6.5 0.2 13 35 117 139 115 142 0.85 # 23831 # 24442 # 1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_28 - 204 CENP-B_N PF04218.8 53 1.6e-08 25.2 2.8 2 2 5e-08 1.6e-06 18.8 0.2 14 46 167 199 166 200 0.92 # 23831 # 24442 # 1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_10 - 206 Virul_fac_BrkB PF03631.10 260 0.0014 9.2 23.5 1 2 7.7e-06 0.00025 11.7 7.6 166 235 11 79 1 81 0.84 # 8592 # 9209 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.273 1_10 - 206 Virul_fac_BrkB PF03631.10 260 0.0014 9.2 23.5 2 2 0.0021 0.068 3.7 8.0 115 180 135 191 107 193 0.63 # 8592 # 9209 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.273 1_29 - 140 Fe_dep_repress PF01325.14 60 0.00013 13.2 0.0 1 1 7.1e-06 0.00023 12.5 0.0 24 53 49 78 44 83 0.87 # 24795 # 25214 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.264 1_27 - 193 TetR_N PF00440.18 47 0.00014 12.9 0.1 1 1 1.7e-05 0.00054 11.0 0.0 16 36 160 180 158 180 0.92 # 23126 # 23704 # 1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 1_27 - 193 HTH_Mga PF08280.6 59 0.00026 12.1 1.8 1 1 9.4e-06 0.0003 11.9 0.5 2 44 144 185 143 187 0.91 # 23126 # 23704 # 1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 1_27 - 193 HTH_38 PF13936.1 44 2.3e-06 18.4 0.0 1 1 3.6e-07 5.7e-06 17.2 0.0 13 41 153 181 143 183 0.86 # 23126 # 23704 # 1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 1_28 - 204 HTH_38 PF13936.1 44 9.1e-06 16.6 2.1 1 1 8.3e-07 1.3e-05 16.0 0.2 15 39 170 194 160 195 0.93 # 23831 # 24442 # 1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_28 - 204 Sigma70_r4 PF04545.11 50 5.9e-05 13.7 0.1 1 1 4.2e-06 0.00013 12.6 0.1 9 41 160 196 157 198 0.92 # 23831 # 24442 # 1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_29 - 140 HTH_27 PF13463.1 68 1.8e-10 32.4 0.0 1 1 1.5e-11 2.5e-10 31.9 0.0 1 67 31 96 31 97 0.90 # 24795 # 25214 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.264 1_26 - 127 HTH_27 PF13463.1 68 0.0002 13.0 0.0 1 1 8e-05 0.0013 10.4 0.0 4 54 11 64 8 70 0.92 # 22482 # 22862 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.257 1_25 - 586 SprT-like PF10263.4 157 3.6e-05 14.8 0.0 1 1 2.8e-06 9.1e-05 13.5 0.0 7 71 145 206 140 209 0.85 # 20735 # 22492 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.263 1_28 - 204 HTH_Tnp_IS630 PF01710.11 120 4.3e-05 14.5 0.1 1 1 7.1e-06 0.00011 13.1 0.1 9 41 166 198 162 203 0.88 # 23831 # 24442 # 1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_27 - 193 HTH_Tnp_IS630 PF01710.11 120 5e-05 14.3 0.0 1 1 6e-06 9.5e-05 13.4 0.0 17 48 159 190 134 192 0.86 # 23126 # 23704 # 1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 1_10 - 206 Cad PF03596.8 191 1.9e-85 276.7 16.4 1 1 6.7e-87 2.1e-85 276.5 16.4 1 191 12 203 12 203 0.99 # 8592 # 9209 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.273 1_28 - 204 HTH_40 PF14493.1 91 1e-05 17.0 0.9 1 2 0.03 0.48 2.1 0.1 24 57 94 127 72 147 0.76 # 23831 # 24442 # 1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_28 - 204 HTH_40 PF14493.1 91 1e-05 17.0 0.9 2 2 1.1e-05 0.00018 13.1 0.1 7 31 169 193 165 194 0.92 # 23831 # 24442 # 1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_27 - 193 HTH_40 PF14493.1 91 2.3e-05 15.9 0.0 1 1 2.9e-06 4.6e-05 15.0 0.0 8 42 155 189 153 191 0.90 # 23126 # 23704 # 1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 1_28 - 204 HTH_3 PF01381.17 55 0.00024 12.3 0.6 1 1 1.4e-05 0.00044 11.4 0.1 13 33 179 199 171 201 0.88 # 23831 # 24442 # 1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_29 - 140 TrmB PF01978.14 68 2.6e-07 21.6 0.0 1 1 4.7e-08 7.6e-07 20.2 0.0 1 58 26 83 25 98 0.92 # 24795 # 25214 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.264 1_27 - 193 TrmB PF01978.14 68 1.8e-06 18.9 0.0 1 1 2.6e-07 4.1e-06 17.8 0.0 8 48 147 186 144 188 0.77 # 23126 # 23704 # 1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 1_25 - 586 Peptidase_M48 PF01435.13 226 0.00015 12.6 0.0 1 1 1e-05 0.00033 11.5 0.0 64 124 173 230 113 268 0.76 # 20735 # 22492 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.263 1_20 - 100 zf-DHHC PF01529.15 174 0.017 5.8 8.3 1 1 0.00065 0.021 5.5 8.3 101 167 13 79 4 96 0.69 # 15152 # 15451 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.237 1_27 - 193 Trp_repressor PF01371.14 88 9.3e-06 16.9 0.5 1 2 0.057 1.8 -0.1 0.1 3 33 87 117 85 124 0.83 # 23126 # 23704 # 1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 1_27 - 193 Trp_repressor PF01371.14 88 9.3e-06 16.9 0.5 2 2 2e-06 6.3e-05 14.2 0.0 39 79 150 190 146 192 0.89 # 23126 # 23704 # 1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 1_14 - 315 RepA_N PF06970.6 76 1.9e-35 111.9 4.9 1 1 1.8e-36 5.7e-35 110.4 4.9 1 76 15 90 15 90 0.99 # 10824 # 11768 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.279 1_10 - 206 Sdh_cyt PF01127.17 121 0.00088 10.4 15.6 1 2 0.00031 0.01 7.0 1.9 35 120 13 117 2 118 0.59 # 8592 # 9209 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.273 1_10 - 206 Sdh_cyt PF01127.17 121 0.00088 10.4 15.6 2 2 0.001 0.032 5.4 6.2 33 78 144 189 129 192 0.52 # 8592 # 9209 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.273 1_27 - 193 HTH_32 PF13565.1 77 5.7e-06 18.4 0.3 1 1 3.4e-07 1.1e-05 17.5 0.3 19 77 131 181 118 181 0.80 # 23126 # 23704 # 1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/0d93e077-7530-445e-9541-7eafa0013275 # Target file: checkm_output/bins/pGCA_002633865.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002633865.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/0d93e077-7530-445e-9541-7eafa0013275 checkm_output/bins/pGCA_002633865.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Staphylococcus/training_20210111 # Date: Mon Jan 11 14:55:39 2021 # [ok]