# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_1 - 132 Sterol-sensing PF12349.3 153 2.1e-05 14.3 0.0 1 1 1.9e-06 2.9e-05 13.8 0.0 42 97 10 67 3 71 0.88 # 65 # 460 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.240 1_11 - 204 HTH_19 PF12844.2 64 4.6e-12 36.2 0.1 1 1 5.6e-13 8.3e-12 35.3 0.1 3 60 7 63 6 66 0.95 # 7757 # 8368 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.279 1_11 - 204 DcuC PF03606.10 465 1.7e-05 13.4 1.4 1 1 3e-06 2.2e-05 13.0 1.4 228 303 67 148 50 162 0.70 # 7757 # 8368 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.279 1_6 - 125 DcuC PF03606.10 465 3.8e-05 12.2 0.0 1 1 5.2e-06 3.9e-05 12.2 0.0 202 263 4 67 1 90 0.88 # 3098 # 3472 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.261 1_8 - 151 DUF972 PF06156.8 107 1.7e-05 15.4 2.3 1 1 4e-06 3e-05 14.6 2.3 2 57 70 125 46 150 0.78 # 4063 # 4515 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.338 1_9 - 427 DUF972 PF06156.8 107 0.043 4.5 25.5 1 2 0.0039 0.029 5.0 8.7 3 66 231 293 203 300 0.54 # 4898 # 6178 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.366 1_9 - 427 DUF972 PF06156.8 107 0.043 4.5 25.5 2 2 0.00013 0.00099 9.8 3.4 11 62 292 343 282 354 0.82 # 4898 # 6178 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.366 1_11 - 204 HTH_31 PF13560.1 64 1.7e-09 28.1 0.0 1 1 1.7e-10 2.6e-09 27.5 0.0 7 61 9 61 7 63 0.94 # 7757 # 8368 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.279 1_11 - 204 HTH_37 PF13744.1 80 9e-07 19.0 1.8 1 1 6.5e-08 9.8e-07 18.8 0.3 22 76 7 59 3 59 0.95 # 7757 # 8368 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.279 1_4 - 141 DUF2116 PF09889.4 59 0.00026 11.1 1.4 1 1 3.4e-05 0.00052 10.1 1.4 30 56 5 31 2 34 0.87 # 1681 # 2103 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.232 1_10 - 286 Rep_3 PF01051.16 222 1.2e-47 152.6 14.4 1 1 1e-48 1.5e-47 152.2 14.4 3 222 4 218 2 218 0.93 # 6852 # 7709 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.270 1_9 - 427 TIGR02168 TIGR02168 1181 8.1e-08 20.2 16.0 1 2 0.037 0.56 -2.4 2.3 799 933 42 61 5 135 0.37 # 4898 # 6178 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.366 1_9 - 427 TIGR02168 TIGR02168 1181 8.1e-08 20.2 16.0 2 2 5.4e-09 8.1e-08 20.2 16.0 244 422 171 346 143 374 0.77 # 4898 # 6178 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.366 1_11 - 204 HTH_11 PF08279.7 55 0.0001 12.2 0.3 1 1 1.9e-05 0.00028 10.8 0.3 7 34 9 35 5 36 0.84 # 7757 # 8368 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.279 1_9 - 427 DcpS_C PF11969.3 116 0.00013 12.4 0.3 1 1 8.9e-06 0.00013 12.4 0.3 61 109 121 166 97 172 0.87 # 4898 # 6178 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.366 1_10 - 286 RepC PF06504.6 283 1.7e-06 17.3 0.0 1 1 1.6e-07 2.4e-06 16.8 0.0 95 214 27 148 16 170 0.81 # 6852 # 7709 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.270 1_11 - 204 HTH_25 PF13413.1 62 1.3e-05 15.0 0.1 1 1 1.7e-06 2.5e-05 14.2 0.1 4 34 10 40 8 59 0.94 # 7757 # 8368 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.279 1_11 - 204 HTH_3 PF01381.17 55 3.2e-14 42.8 0.3 1 1 3.3e-15 5e-14 42.2 0.3 2 55 9 61 8 61 0.95 # 7757 # 8368 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.279 1_11 - 204 HTH_26 PF13443.1 63 1.2e-08 25.3 0.0 1 1 1.5e-09 2.2e-08 24.5 0.0 4 59 10 63 7 67 0.93 # 7757 # 8368 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.279 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/d8ce7997-c0d9-41b9-8d6a-21b7bee21e32 # Target file: checkm_output/bins/pGCA_002591215.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002591215.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/d8ce7997-c0d9-41b9-8d6a-21b7bee21e32 checkm_output/bins/pGCA_002591215.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Staphylococcus/training_20210111 # Date: Mon Jan 11 14:55:31 2021 # [ok]