# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_16 - 117 HTH_12 PF08461.5 66 0.00012 13.7 0.1 1 1 4.2e-06 0.0002 13.0 0.1 21 64 42 91 27 92 0.90 # 11339 # 11689 # -1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.302 3_2 - 720 DUF258 PF03193.11 161 5.6e-07 20.7 0.0 1 1 2.4e-08 1.1e-06 19.7 0.0 19 69 485 537 471 541 0.78 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 1_12 - 203 GerE PF00196.14 58 0.00016 12.9 0.1 1 1 6.6e-06 0.00031 11.9 0.1 11 35 168 192 166 196 0.94 # 8350 # 8958 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.353 3_2 - 720 TIGR01978 TIGR01978 243 3.4e-25 80.3 1.8 1 1 2e-26 9.6e-25 78.9 1.8 2 230 478 698 477 709 0.82 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 AAA_18 PF13238.1 129 2e-06 20.0 0.3 1 1 5.2e-07 2.4e-05 16.5 0.3 1 23 506 554 506 686 0.71 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 1_13 - 140 MarR_2 PF12802.2 62 9.8e-14 42.7 0.0 1 1 2.7e-15 1.3e-13 42.4 0.0 1 61 29 87 29 88 0.95 # 9229 # 9648 # -1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.267 1_18 - 173 DJ-1_PfpI PF01965.19 147 3.6e-40 128.6 0.0 1 1 9.3e-42 4.3e-40 128.4 0.0 2 147 32 171 31 171 0.97 # 12516 # 13034 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 1_13 - 140 HTH_Crp_2 PF13545.1 76 0.00027 12.6 0.0 1 1 9.9e-06 0.00047 11.8 0.0 32 67 51 91 42 99 0.82 # 9229 # 9648 # -1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.267 3_2 - 720 Zeta_toxin PF06414.7 201 9.2e-06 16.7 0.0 1 1 3.4e-07 1.6e-05 15.9 0.0 16 57 503 553 490 706 0.86 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 AAA_22 PF13401.1 131 8.1e-09 27.6 0.2 1 1 1.4e-09 6.5e-08 24.7 0.2 4 120 503 669 499 677 0.65 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_9 - 67 HTH_19 PF12844.2 64 3.9e-19 60.4 0.7 1 1 9.7e-21 4.6e-19 60.2 0.7 3 63 3 63 2 64 0.96 # 6709 # 6909 # -1 # ID=3_9;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.249 1_12 - 203 Sigma70_r4_2 PF08281.7 54 0.00091 10.6 1.7 1 2 0.068 3.2 -0.8 0.0 15 32 57 74 54 75 0.89 # 8350 # 8958 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.353 1_12 - 203 Sigma70_r4_2 PF08281.7 54 0.00091 10.6 1.7 2 2 5.8e-05 0.0027 9.1 0.1 15 45 165 194 163 197 0.91 # 8350 # 8958 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.353 1_12 - 203 Mor PF08765.6 108 0.00019 13.1 0.2 1 1 7.6e-06 0.00036 12.2 0.2 6 92 108 195 105 199 0.91 # 8350 # 8958 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.353 3_2 - 720 NB-ARC PF00931.17 287 5.8e-05 13.8 0.0 1 1 4.2e-06 0.0002 12.1 0.0 18 43 502 527 488 547 0.83 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 Mg_chelatase PF01078.16 207 0.00011 13.3 0.0 1 1 3.9e-06 0.00018 12.5 0.0 25 105 506 587 490 610 0.72 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_9 - 67 HTH_31 PF13560.1 64 2.3e-11 35.7 0.0 1 1 5.3e-13 2.5e-11 35.6 0.0 6 59 4 56 2 64 0.94 # 6709 # 6909 # -1 # ID=3_9;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.249 1_12 - 203 HTH_22 PF13309.1 64 1.8e-07 22.7 0.9 1 3 0.079 1.8 0.3 0.0 24 38 72 86 62 95 0.84 # 8350 # 8958 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.353 1_12 - 203 HTH_22 PF13309.1 64 1.8e-07 22.7 0.9 2 3 0.002 0.048 5.4 0.2 3 41 109 147 107 149 0.93 # 8350 # 8958 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.353 1_12 - 203 HTH_22 PF13309.1 64 1.8e-07 22.7 0.9 3 3 5.5e-06 0.00013 13.6 0.0 43 61 176 194 171 195 0.94 # 8350 # 8958 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.353 1_6 - 85 HTH_22 PF13309.1 64 1.2e-06 20.1 0.5 1 2 7.5e-06 0.00018 13.2 0.0 43 64 2 23 1 23 0.92 # 4228 # 4482 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.271 1_6 - 85 HTH_22 PF13309.1 64 1.2e-06 20.1 0.5 2 2 0.0026 0.06 5.0 0.5 3 36 47 80 43 84 0.78 # 4228 # 4482 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.271 3_9 - 67 HTH_37 PF13744.1 80 7.7e-05 14.4 0.1 1 1 1.7e-06 7.8e-05 14.4 0.1 20 56 1 37 1 56 0.89 # 6709 # 6909 # -1 # ID=3_9;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.249 1_8 - 225 MULE PF10551.4 93 9.8e-05 14.4 0.0 1 1 4.7e-06 0.00022 13.3 0.0 19 77 92 147 63 161 0.84 # 5119 # 5793 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 3_11 - 124 Thioredoxin_2 PF13098.1 112 6.2e-10 31.2 0.0 1 1 1.8e-11 8.7e-10 30.7 0.0 4 102 28 112 25 118 0.73 # 7187 # 7558 # -1 # ID=3_11;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.261 1_8 - 225 HEM4 PF02602.10 231 0.00022 12.3 0.0 1 1 1.6e-05 0.00038 11.6 0.0 125 154 24 53 9 70 0.79 # 5119 # 5793 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 2_4 - 129 HEM4 PF02602.10 231 0.00041 11.4 0.0 1 1 2.2e-05 0.00051 11.1 0.0 124 156 23 54 8 71 0.77 # 2201 # 2587 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.336 2_10 - 297 HTH_36 PF13730.1 55 7.5e-09 27.5 0.2 1 1 1.2e-09 1.9e-08 26.3 0.2 4 55 51 103 48 103 0.93 # 5451 # 6341 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.263 2_14 - 307 HTH_36 PF13730.1 55 2.9e-07 22.5 0.6 1 1 4e-08 6.2e-07 21.4 0.6 2 54 47 110 46 111 0.85 # 7850 # 8770 # -1 # ID=2_14;partial=00;start_type=TTG;rbs_motif=TATAA;rbs_spacer=12bp;gc_cont=0.268 1_5 - 328 HTH_36 PF13730.1 55 7.9e-05 14.7 0.6 1 1 1.3e-05 0.0002 13.4 0.6 2 55 31 95 30 95 0.75 # 2947 # 3930 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.280 1_13 - 140 Penicillinase_R PF03965.11 115 0.00024 13.0 0.0 1 1 7.7e-06 0.00036 12.5 0.0 1 58 31 84 31 126 0.83 # 9229 # 9648 # -1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.267 3_2 - 720 AAA_33 PF13671.1 143 0.00013 13.7 0.0 1 1 4.9e-06 0.00023 12.9 0.0 2 21 506 525 505 562 0.82 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 1_16 - 117 PadR PF03551.9 75 0.00017 13.2 0.1 1 1 5.9e-06 0.00028 12.6 0.0 22 70 44 90 35 94 0.82 # 11339 # 11689 # -1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.302 3_2 - 720 AAA_30 PF13604.1 196 0.00011 13.7 0.0 1 1 5.4e-06 0.00025 12.5 0.0 13 48 498 533 496 549 0.87 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_1 - 331 UxuA PF03786.8 351 3.7e-05 14.2 1.0 1 1 1.2e-06 5.7e-05 13.6 1.0 26 90 88 152 67 157 0.88 # 1 # 993 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 3_2 - 720 AAA_17 PF13207.1 121 4e-07 22.8 0.1 1 1 9.7e-08 1.1e-06 21.3 0.1 2 32 506 538 505 654 0.58 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 1_8 - 225 AAA_17 PF13207.1 121 2e-06 20.5 0.9 1 1 2.8e-07 3.2e-06 19.8 0.9 23 113 24 122 19 175 0.84 # 5119 # 5793 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 2_4 - 129 AAA_17 PF13207.1 121 7e-05 15.5 1.0 1 1 7.3e-06 8.6e-05 15.2 1.0 22 110 23 119 15 126 0.76 # 2201 # 2587 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.336 4_1 - 118 AAA_17 PF13207.1 121 0.00028 13.6 0.7 1 1 3.1e-05 0.00037 13.2 0.7 23 100 24 108 17 116 0.71 # 59 # 412 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 3_2 - 720 Sigma54_activat PF00158.21 168 2.6e-05 15.6 0.0 1 1 1.1e-06 5.4e-05 14.6 0.0 9 51 490 532 483 558 0.78 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_4 - 435 HATPase_c PF02518.21 111 1.9e-08 25.9 0.2 1 1 6.6e-10 3.1e-08 25.2 0.2 4 87 328 408 325 423 0.93 # 3508 # 4812 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.195 1_13 - 140 B-block_TFIIIC PF04182.7 75 0.00013 13.7 0.2 1 2 0.073 3.4 -0.5 0.0 30 48 13 31 5 47 0.78 # 9229 # 9648 # -1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.267 1_13 - 140 B-block_TFIIIC PF04182.7 75 0.00013 13.7 0.2 2 2 1e-05 0.00049 11.8 0.1 25 54 54 83 48 115 0.82 # 9229 # 9648 # -1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.267 1_18 - 173 SNO PF01174.14 188 0.00021 12.7 0.0 1 1 5.4e-06 0.00025 12.5 0.0 32 98 63 128 25 155 0.82 # 12516 # 13034 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 1_14 - 324 ADH_N PF08240.7 109 5.4e-10 30.9 0.0 1 2 1.2e-09 5.6e-08 24.4 0.0 2 61 29 86 28 90 0.88 # 9772 # 10743 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.320 1_14 - 324 ADH_N PF08240.7 109 5.4e-10 30.9 0.0 2 2 0.0012 0.056 5.1 0.0 84 109 88 113 80 113 0.81 # 9772 # 10743 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.320 1_13 - 140 HTH_34 PF13601.1 80 0.00016 13.6 0.1 1 1 1.4e-05 0.00033 12.6 0.1 4 63 37 95 34 107 0.87 # 9229 # 9648 # -1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.267 1_2 - 116 HTH_34 PF13601.1 80 0.00017 13.5 0.2 1 1 1.1e-05 0.00025 12.9 0.2 2 49 44 91 43 96 0.93 # 419 # 766 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.250 1_12 - 203 HTH_29 PF13551.1 112 2.4e-06 19.6 0.2 1 2 0.084 4 -0.5 0.0 20 55 115 150 105 164 0.64 # 8350 # 8958 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.353 1_12 - 203 HTH_29 PF13551.1 112 2.4e-06 19.6 0.2 2 2 3.5e-07 1.6e-05 16.9 0.0 4 34 168 197 166 199 0.91 # 8350 # 8958 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.353 1_13 - 140 MarR PF01047.17 59 7.4e-15 46.3 0.0 1 1 2.6e-16 1.2e-14 45.7 0.0 1 59 31 89 31 89 0.98 # 9229 # 9648 # -1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.267 1_2 - 116 HTH_20 PF12840.2 61 2.9e-05 15.7 0.0 1 1 7.7e-07 3.6e-05 15.4 0.0 15 57 48 89 34 93 0.87 # 419 # 766 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.250 1_2 - 116 HTH_5 PF01022.15 47 1.8e-17 54.6 1.6 1 1 6.8e-19 3.2e-17 53.9 1.6 1 45 41 86 41 88 0.95 # 419 # 766 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.250 3_4 - 435 HATPase_c_5 PF14501.1 100 3.7e-16 50.6 5.8 1 1 7.8e-18 3.7e-16 50.6 5.8 4 99 328 431 325 432 0.83 # 3508 # 4812 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.195 1_14 - 324 TIGR02817 TIGR02817 336 3.1e-17 54.5 0.0 1 1 9.1e-19 4.3e-17 54.0 0.0 23 215 22 218 8 231 0.85 # 9772 # 10743 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.320 1_13 - 140 HTH_24 PF13412.1 48 9.4e-05 13.7 0.0 1 1 3.4e-06 0.00016 12.9 0.0 8 48 38 78 32 78 0.89 # 9229 # 9648 # -1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.267 1_17 - 212 TIGR01740 TIGR01740 216 1.2e-19 62.3 8.0 1 1 5.4e-21 2.5e-19 61.3 8.0 3 215 5 203 3 204 0.79 # 11792 # 12427 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 3_2 - 720 AAA_21 PF13304.1 303 4.6e-09 28.4 4.3 1 1 9.8e-11 4.6e-09 28.4 4.3 1 297 505 672 505 678 0.77 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 1_17 - 212 OMPdecase PF00215.19 226 5.2e-33 106.1 6.2 1 1 1.3e-34 6.1e-33 105.9 6.2 1 225 1 202 1 203 0.95 # 11792 # 12427 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_8 - 225 DDE_Tnp_IS240 PF13610.1 140 3.8e-44 141.9 2.8 1 1 7.9e-45 5.3e-44 141.4 2.8 3 139 72 203 70 204 0.95 # 5119 # 5793 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 2_4 - 129 DDE_Tnp_IS240 PF13610.1 140 9.9e-26 82.2 0.8 1 1 2.4e-26 1.6e-25 81.5 0.8 3 55 72 124 70 128 0.95 # 2201 # 2587 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.336 4_1 - 118 DDE_Tnp_IS240 PF13610.1 140 3.2e-22 70.9 1.4 1 1 7.8e-23 5.2e-22 70.2 1.4 3 47 72 116 70 117 0.97 # 59 # 412 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 2_7 - 54 DDE_Tnp_IS240 PF13610.1 140 2.4e-20 64.8 0.2 1 1 3.9e-21 2.6e-20 64.7 0.2 10 56 4 50 3 53 0.94 # 4410 # 4571 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=TATAA;rbs_spacer=11bp;gc_cont=0.352 4_2 - 97 DDE_Tnp_IS240 PF13610.1 140 1.9e-15 48.9 0.2 1 1 3.3e-16 2.2e-15 48.7 0.2 62 139 2 75 1 76 0.91 # 444 # 734 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 2_8 - 97 DDE_Tnp_IS240 PF13610.1 140 9.2e-15 46.7 0.2 1 1 1.6e-15 1.1e-14 46.5 0.2 62 138 2 74 1 77 0.89 # 4568 # 4858 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=5bp;gc_cont=0.347 2_3 - 73 DDE_Tnp_IS240 PF13610.1 140 1.5e-14 46.0 0.2 1 1 2.5e-15 1.7e-14 45.9 0.2 62 135 2 71 1 72 0.89 # 1986 # 2204 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=5bp;gc_cont=0.338 1_17 - 212 Pterin_bind PF00809.17 210 4.7e-06 17.9 1.0 1 2 0.031 1.5 -0.0 0.0 114 161 30 78 9 85 0.50 # 11792 # 12427 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_17 - 212 Pterin_bind PF00809.17 210 4.7e-06 17.9 1.0 2 2 3.7e-07 1.7e-05 16.1 0.1 78 166 89 173 83 174 0.78 # 11792 # 12427 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_12 - 203 HTH_7 PF02796.10 45 1.1e-22 71.6 1.6 1 1 2.7e-24 1.3e-22 71.3 0.3 1 44 147 198 147 199 0.95 # 8350 # 8958 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.353 1_13 - 140 DUF2250 PF10007.4 93 8.3e-05 14.4 0.1 1 1 3.2e-06 0.00015 13.5 0.1 7 58 32 83 26 130 0.83 # 9229 # 9648 # -1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.267 1_6 - 85 HTH_DeoR PF08220.7 57 7.3e-05 14.2 0.4 1 2 5.4e-06 0.00025 12.4 0.0 16 35 3 22 2 34 0.85 # 4228 # 4482 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.271 1_6 - 85 HTH_DeoR PF08220.7 57 7.3e-05 14.2 0.4 2 2 0.077 3.6 -0.9 0.1 2 13 44 55 44 57 0.80 # 4228 # 4482 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.271 3_2 - 720 AAA_14 PF13173.1 128 9.2e-06 17.5 1.7 1 2 4e-06 0.00019 13.2 0.3 4 70 505 584 502 605 0.70 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 AAA_14 PF13173.1 128 9.2e-06 17.5 1.7 2 2 0.0091 0.43 2.4 0.1 53 98 623 672 604 707 0.62 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 AAA PF00004.24 132 1.3e-06 20.5 0.9 1 1 8.9e-07 4.2e-05 15.6 0.9 2 114 507 676 506 682 0.69 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 AAA_10 PF12846.2 304 6.2e-08 24.2 0.6 1 3 4.5e-07 2.1e-05 15.9 0.1 4 31 506 533 504 538 0.81 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 AAA_10 PF12846.2 304 6.2e-08 24.2 0.6 2 3 0.0047 0.22 2.6 0.0 174 245 534 600 529 602 0.66 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 AAA_10 PF12846.2 304 6.2e-08 24.2 0.6 3 3 0.0052 0.25 2.5 0.0 220 271 632 682 620 705 0.85 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 AAA_16 PF13191.1 185 7.3e-06 17.9 0.0 1 1 4e-07 1.9e-05 16.6 0.0 25 52 504 532 489 669 0.72 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 1_14 - 324 Epimerase PF01370.16 236 0.00015 13.0 0.0 1 1 5e-06 0.00024 12.4 0.0 1 39 152 191 152 216 0.80 # 9772 # 10743 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.320 1_16 - 117 HxlR PF01638.12 91 1.2e-33 106.6 0.1 1 1 2.9e-35 1.4e-33 106.3 0.1 1 89 20 109 20 111 0.97 # 11339 # 11689 # -1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.302 1_14 - 324 NmrA PF05368.8 233 5.8e-06 17.5 0.6 1 1 2.9e-07 1.4e-05 16.3 0.6 1 52 152 205 152 275 0.90 # 9772 # 10743 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.320 1_12 - 203 HTH_23 PF13384.1 50 1.8e-09 28.9 0.1 1 1 5.1e-10 4.8e-09 27.6 0.1 6 39 164 197 159 200 0.89 # 8350 # 8958 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.353 2_4 - 129 HTH_23 PF13384.1 50 4.4e-06 18.2 1.0 1 1 1.3e-05 0.00013 13.5 0.1 28 41 41 54 40 67 0.92 # 2201 # 2587 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.336 1_8 - 225 HTH_23 PF13384.1 50 7.7e-06 17.4 1.4 1 1 1e-05 9.7e-05 13.9 0.1 28 41 41 54 40 57 0.92 # 5119 # 5793 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_6 - 85 HTH_23 PF13384.1 50 3.7e-05 15.2 0.0 1 1 1e-05 9.5e-05 13.9 0.0 18 42 2 26 2 33 0.89 # 4228 # 4482 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.271 4_1 - 118 HTH_23 PF13384.1 50 6.5e-05 14.4 1.8 1 1 5.4e-05 0.00051 11.6 0.8 29 41 42 54 41 70 0.93 # 59 # 412 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 3_2 - 720 T2SE PF00437.15 272 2.1e-05 15.3 0.0 1 1 7.8e-07 3.6e-05 14.5 0.0 59 163 435 545 421 550 0.77 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 1_6 - 85 UPF0122 PF04297.9 101 0.00017 13.5 5.7 1 1 4.7e-06 0.00022 13.1 5.7 35 90 3 57 2 70 0.79 # 4228 # 4482 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.271 1_18 - 173 GATase PF00117.23 192 8e-07 20.5 0.0 1 1 2e-08 9.5e-07 20.2 0.0 36 86 43 112 13 154 0.72 # 12516 # 13034 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 1_19 - 257 TIGR02168 TIGR02168 1181 1.1e-07 21.4 33.5 1 1 5.6e-09 1.3e-07 21.2 33.5 253 431 48 226 13 247 0.82 # 13233 # 14003 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.265 3_2 - 720 TIGR02168 TIGR02168 1181 1.6e-05 14.3 0.0 1 1 1e-06 2.5e-05 13.6 0.0 1117 1164 636 684 628 686 0.95 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 1_14 - 324 DapB_N PF01113.15 124 4.5e-06 18.5 0.2 1 2 0.042 2 0.2 0.0 92 103 121 132 115 142 0.84 # 9772 # 10743 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.320 1_14 - 324 DapB_N PF01113.15 124 4.5e-06 18.5 0.2 2 2 1e-06 4.8e-05 15.1 0.2 3 97 152 242 150 250 0.78 # 9772 # 10743 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.320 1_18 - 173 DUF4066 PF13278.1 166 5.3e-16 50.1 0.0 1 1 1.4e-17 6.5e-16 49.9 0.0 2 151 9 153 8 154 0.91 # 12516 # 13034 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 1_17 - 212 Ribul_P_3_epim PF00834.14 201 1.1e-06 19.7 2.5 1 1 8.2e-08 3.8e-06 17.9 2.5 46 200 41 193 23 194 0.81 # 11792 # 12427 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_17 - 212 IGPS PF00218.16 254 5.4e-07 20.7 1.0 1 1 1.5e-08 7.3e-07 20.3 1.0 120 252 66 201 38 203 0.79 # 11792 # 12427 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_6 - 85 HTH_11 PF08279.7 55 9.2e-08 23.6 1.0 1 1 1.3e-08 2e-07 22.5 0.1 17 40 3 26 2 32 0.93 # 4228 # 4482 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.271 1_12 - 203 HTH_11 PF08279.7 55 0.00011 13.7 0.1 1 1 2.6e-05 0.0004 11.9 0.1 18 34 178 194 166 195 0.77 # 8350 # 8958 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.353 1_19 - 257 HTH_11 PF08279.7 55 0.00019 12.9 0.0 1 1 4.9e-05 0.00077 11.0 0.0 21 40 7 26 3 31 0.87 # 13233 # 14003 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.265 3_2 - 720 NACHT PF05729.7 166 6.7e-05 14.4 0.2 1 1 4e-06 0.00019 13.0 0.0 3 26 506 529 504 542 0.84 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 2_4 - 129 Arg_repressor PF01316.16 70 0.00012 13.5 0.0 1 1 9.6e-06 0.00023 12.6 0.0 24 49 30 55 24 77 0.74 # 2201 # 2587 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.336 1_8 - 225 Arg_repressor PF01316.16 70 0.00014 13.3 0.0 1 1 1.8e-05 0.00043 11.7 0.0 24 48 30 54 25 74 0.81 # 5119 # 5793 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_18 - 173 GATase_3 PF07685.9 158 0.0001 13.7 0.0 1 1 3.2e-06 0.00015 13.2 0.0 2 59 59 115 58 161 0.80 # 12516 # 13034 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 1_12 - 203 HTH_28 PF13518.1 52 9.6e-09 27.0 0.1 1 1 2e-09 2.3e-08 25.8 0.1 4 34 167 197 166 198 0.94 # 8350 # 8958 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.353 4_1 - 118 HTH_28 PF13518.1 52 3e-05 15.9 0.7 1 1 7.9e-06 9.2e-05 14.3 0.7 14 36 30 54 17 55 0.84 # 59 # 412 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 1_8 - 225 HTH_28 PF13518.1 52 4.3e-05 15.4 0.4 1 1 1.6e-05 0.00019 13.3 0.4 15 36 31 54 17 55 0.80 # 5119 # 5793 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 2_4 - 129 HTH_28 PF13518.1 52 4.6e-05 15.3 0.4 1 1 1.4e-05 0.00016 13.6 0.2 15 36 31 54 22 55 0.85 # 2201 # 2587 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.336 1_19 - 257 HlyD PF00529.15 305 0.00086 10.5 13.7 1 1 2.5e-05 0.0012 10.0 13.7 43 136 106 198 94 233 0.87 # 13233 # 14003 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.265 1_14 - 324 ADH_zinc_N PF00107.21 130 4.7e-17 53.6 0.0 1 1 2.1e-18 1e-16 52.5 0.0 1 117 160 270 160 285 0.90 # 9772 # 10743 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.320 3_2 - 720 AAA_25 PF13481.1 194 1.6e-05 16.2 0.0 1 2 2.7e-06 0.00013 13.3 0.0 29 51 499 521 482 541 0.84 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 AAA_25 PF13481.1 194 1.6e-05 16.2 0.0 2 2 0.029 1.3 0.1 0.0 131 188 621 672 591 673 0.68 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 1_8 - 225 HTH_Tnp_4 PF13613.1 53 9.2e-05 13.9 0.3 1 1 2e-05 0.00031 12.2 0.3 30 49 41 60 18 63 0.84 # 5119 # 5793 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 2_4 - 129 HTH_Tnp_4 PF13613.1 53 0.00018 12.9 0.2 1 1 3.3e-05 0.00052 11.4 0.2 30 49 41 60 20 63 0.90 # 2201 # 2587 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.336 4_1 - 118 HTH_Tnp_4 PF13613.1 53 0.00018 12.9 0.5 1 1 5.2e-05 0.00081 10.8 0.5 31 49 42 60 17 63 0.83 # 59 # 412 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 3_2 - 720 MMR_HSR1 PF01926.18 116 5.5e-05 15.0 0.3 1 1 5e-06 0.00024 13.0 0.1 2 37 506 541 505 585 0.80 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_1 - 331 HlyD_3 PF13437.1 105 4.9e-18 57.3 2.4 1 2 0.00018 0.0083 8.4 0.1 2 44 67 111 66 119 0.84 # 1 # 993 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 3_1 - 331 HlyD_3 PF13437.1 105 4.9e-18 57.3 2.4 2 2 5.7e-17 2.7e-15 48.5 0.4 6 97 203 298 200 306 0.82 # 1 # 993 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 1_14 - 324 NAD_binding_10 PF13460.1 183 8.4e-06 17.7 0.1 1 1 2.5e-07 1.2e-05 17.2 0.1 1 38 152 192 152 241 0.87 # 9772 # 10743 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.320 1_12 - 203 CENP-B_N PF04218.8 53 4.8e-08 24.2 3.4 1 2 0.00037 0.018 6.4 0.3 13 35 117 139 115 142 0.85 # 8350 # 8958 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.353 1_12 - 203 CENP-B_N PF04218.8 53 4.8e-08 24.2 3.4 2 2 7.2e-08 3.4e-06 18.3 0.2 14 46 167 199 166 201 0.91 # 8350 # 8958 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.353 3_2 - 720 ABC_ATPase PF09818.4 448 6.3e-06 16.8 0.1 1 2 0.04 1.9 -1.3 0.0 242 263 500 522 496 533 0.79 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 ABC_ATPase PF09818.4 448 6.3e-06 16.8 0.1 2 2 4.8e-07 2.2e-05 14.9 0.0 298 365 589 657 582 682 0.85 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 NTPase_1 PF03266.10 168 5.9e-05 14.6 0.2 1 2 0.00046 0.021 6.3 0.0 2 27 506 531 505 535 0.84 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 NTPase_1 PF03266.10 168 5.9e-05 14.6 0.2 2 2 0.00092 0.043 5.3 0.1 85 154 624 693 613 704 0.78 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 1_3 - 206 Virul_fac_BrkB PF03631.10 260 0.0021 9.2 23.5 1 2 7.7e-06 0.00036 11.7 7.6 166 235 11 79 1 81 0.84 # 785 # 1402 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_3 - 206 Virul_fac_BrkB PF03631.10 260 0.0021 9.2 23.5 2 2 0.0021 0.1 3.7 8.0 115 180 135 191 107 193 0.63 # 785 # 1402 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 3_11 - 124 Thioredoxin PF00085.15 104 0.00028 12.5 0.0 1 1 1.8e-05 0.00087 10.9 0.0 28 93 38 114 13 122 0.70 # 7187 # 7558 # -1 # ID=3_11;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.261 1_13 - 140 Fe_dep_repress PF01325.14 60 0.00019 13.2 0.0 1 1 7.1e-06 0.00033 12.5 0.0 24 53 49 78 44 83 0.87 # 9229 # 9648 # -1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.267 1_10 - 189 TetR_N PF00440.18 47 1.1e-18 58.5 0.1 1 1 3.8e-20 1.8e-18 57.9 0.1 1 47 7 53 7 53 0.98 # 7574 # 8140 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.243 1_17 - 212 TMP-TENI PF02581.12 180 2.5e-06 18.5 1.9 1 1 4.3e-07 2e-05 15.6 1.9 100 169 111 179 3 206 0.82 # 11792 # 12427 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_8 - 225 rve PF00665.21 120 3.8e-18 57.6 0.5 1 1 3.2e-18 2.5e-17 55.0 0.3 2 117 66 174 65 176 0.93 # 5119 # 5793 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 2_4 - 129 rve PF00665.21 120 9.2e-11 33.8 0.2 1 1 1.2e-10 9.8e-10 30.5 0.1 4 65 68 126 65 128 0.88 # 2201 # 2587 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.336 4_1 - 118 rve PF00665.21 120 3.4e-07 22.3 0.4 1 1 2.1e-07 1.7e-06 20.0 0.2 4 48 68 109 65 117 0.72 # 59 # 412 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 2_7 - 54 rve PF00665.21 120 3.6e-06 19.0 0.0 1 1 4.9e-07 3.8e-06 18.9 0.0 16 65 5 51 2 53 0.87 # 4410 # 4571 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=TATAA;rbs_spacer=11bp;gc_cont=0.352 4_2 - 97 rve PF00665.21 120 0.00018 13.5 0.0 1 1 3.2e-05 0.00025 13.0 0.0 71 117 2 46 1 48 0.93 # 444 # 734 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 2_3 - 73 rve PF00665.21 120 0.00018 13.5 0.0 1 1 3e-05 0.00023 13.1 0.0 71 117 2 46 1 48 0.93 # 1986 # 2204 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=5bp;gc_cont=0.338 1_17 - 212 PcrB PF01884.12 231 2.8e-05 15.2 0.5 1 2 0.0099 0.46 1.5 0.5 173 225 44 97 11 103 0.61 # 11792 # 12427 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_17 - 212 PcrB PF01884.12 231 2.8e-05 15.2 0.5 2 2 6e-07 2.8e-05 15.2 0.5 142 223 121 199 103 207 0.73 # 11792 # 12427 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 3_9 - 67 HTH_25 PF13413.1 62 2.1e-06 19.2 0.1 1 1 6.3e-08 3e-06 18.7 0.1 3 36 5 38 3 41 0.94 # 6709 # 6909 # -1 # ID=3_9;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.249 2_4 - 129 HTH_Tnp_1 PF01527.15 76 0.00017 13.4 1.6 1 1 1.3e-05 0.00031 12.6 0.1 31 47 38 54 5 69 0.69 # 2201 # 2587 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.336 4_1 - 118 HTH_Tnp_1 PF01527.15 76 0.00017 13.4 0.5 1 1 1.1e-05 0.00026 12.8 0.2 24 47 29 54 5 69 0.76 # 59 # 412 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 3_2 - 720 MobB PF03205.9 140 1.7e-05 16.4 0.0 1 1 9.9e-07 4.6e-05 15.0 0.0 3 27 506 530 504 536 0.88 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 1_12 - 203 HTH_38 PF13936.1 44 3.9e-06 18.3 1.9 1 1 2.9e-07 6.8e-06 17.5 0.1 15 39 170 194 159 195 0.91 # 8350 # 8958 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.353 3_9 - 67 HTH_38 PF13936.1 44 0.00036 12.0 0.0 1 1 2e-05 0.00047 11.6 0.0 12 37 3 29 1 30 0.84 # 6709 # 6909 # -1 # ID=3_9;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.249 1_12 - 203 Sigma70_r4 PF04545.11 50 3.4e-05 15.0 0.1 1 1 1.7e-06 7.8e-05 13.9 0.1 9 42 160 197 157 198 0.93 # 8350 # 8958 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.353 3_12 - 142 TIGR02225 TIGR02225 290 7.6e-10 30.0 1.0 1 1 2e-11 9.3e-10 29.7 1.0 161 285 15 134 6 138 0.87 # 7679 # 8104 # -1 # ID=3_12;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 1_13 - 140 HTH_27 PF13463.1 68 2.7e-10 32.4 0.0 1 1 7.7e-12 3.6e-10 31.9 0.0 1 67 31 96 31 97 0.90 # 9229 # 9648 # -1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.267 2_12 - 85 PHO4 PF01384.15 326 0.00011 12.7 0.1 1 1 2.4e-06 0.00011 12.7 0.1 111 145 30 63 8 79 0.80 # 6774 # 7028 # -1 # ID=2_12;partial=00;start_type=GTG;rbs_motif=AATAA;rbs_spacer=5bp;gc_cont=0.263 1_12 - 203 HTH_Tnp_IS630 PF01710.11 120 0.00015 13.3 0.1 1 1 7.8e-06 0.00037 12.0 0.1 9 37 166 194 163 201 0.92 # 8350 # 8958 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.353 3_1 - 331 HlyD_2 PF12700.2 328 2.5e-11 35.1 26.0 1 1 8e-13 3.8e-11 34.5 26.0 8 261 49 306 47 320 0.71 # 1 # 993 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 1_3 - 206 Cad PF03596.8 191 2.7e-85 276.7 16.4 1 1 6.7e-87 3.1e-85 276.5 16.4 1 191 12 203 12 203 0.99 # 785 # 1402 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_12 - 203 HTH_40 PF14493.1 91 5.5e-05 15.3 0.1 1 1 3.5e-06 0.00016 13.7 0.1 7 31 169 193 165 195 0.92 # 8350 # 8958 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.353 3_9 - 67 HTH_3 PF01381.17 55 5.8e-19 59.6 0.1 1 1 1.4e-20 6.4e-19 59.5 0.1 1 53 4 56 4 58 0.96 # 6709 # 6909 # -1 # ID=3_9;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.249 1_8 - 225 DDE_3 PF13358.1 146 4.4e-06 18.3 0.3 1 1 5.6e-07 8.8e-06 17.4 0.3 26 95 74 143 59 203 0.76 # 5119 # 5793 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 2_7 - 54 DDE_3 PF13358.1 146 2.6e-05 15.9 0.0 1 1 1.7e-06 2.7e-05 15.8 0.0 33 79 6 52 2 53 0.92 # 4410 # 4571 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=TATAA;rbs_spacer=11bp;gc_cont=0.352 2_4 - 129 DDE_3 PF13358.1 146 4.2e-05 15.2 0.0 1 1 4.7e-06 7.4e-05 14.4 0.0 29 79 77 127 56 128 0.82 # 2201 # 2587 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.336 2_4 - 129 DDE_Tnp_IS66 PF03050.9 271 1.7e-09 29.0 0.5 1 1 1.3e-10 2e-09 28.8 0.5 6 98 11 97 7 124 0.75 # 2201 # 2587 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.336 4_1 - 118 DDE_Tnp_IS66 PF03050.9 271 1e-08 26.5 0.7 1 1 7.1e-10 1.1e-08 26.4 0.7 13 103 18 102 7 116 0.78 # 59 # 412 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 1_8 - 225 DDE_Tnp_IS66 PF03050.9 271 1.8e-07 22.4 3.4 1 2 3.3e-08 5.2e-07 20.9 1.1 16 97 21 96 7 134 0.76 # 5119 # 5793 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_8 - 225 DDE_Tnp_IS66 PF03050.9 271 1.8e-07 22.4 3.4 2 2 0.026 0.4 1.6 0.0 243 264 163 184 156 190 0.81 # 5119 # 5793 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_13 - 140 TrmB PF01978.14 68 4.4e-07 21.4 0.0 1 1 5e-08 1.2e-06 20.1 0.0 1 58 26 83 26 99 0.92 # 9229 # 9648 # -1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.267 1_12 - 203 TrmB PF01978.14 68 0.00037 12.1 0.6 1 1 5.1e-05 0.0012 10.5 0.1 20 42 173 195 164 196 0.84 # 8350 # 8958 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.353 3_2 - 720 Sigma54_activ_2 PF14532.1 138 0.00014 13.8 0.0 1 1 7.5e-06 0.00035 12.5 0.0 18 49 500 531 490 562 0.76 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_9 - 67 HTH_26 PF13443.1 63 5.8e-09 28.0 0.3 1 1 1.3e-10 6.3e-09 27.8 0.3 1 58 3 59 3 64 0.94 # 6709 # 6909 # -1 # ID=3_9;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.249 3_11 - 124 Thioredoxin_8 PF13905.1 95 6.1e-06 18.2 0.4 1 2 1.9e-06 8.7e-05 14.5 0.1 1 31 28 58 28 76 0.84 # 7187 # 7558 # -1 # ID=3_11;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.261 3_11 - 124 Thioredoxin_8 PF13905.1 95 6.1e-06 18.2 0.4 2 2 0.013 0.63 2.1 0.1 67 93 76 104 61 106 0.69 # 7187 # 7558 # -1 # ID=3_11;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.261 3_2 - 720 ABC_tran PF00005.22 137 6.4e-35 112.3 0.1 1 1 2.5e-36 1.2e-34 111.4 0.1 1 137 493 643 493 643 0.96 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 SMC_N PF02463.14 220 1.1e-11 36.2 2.0 1 1 1.4e-11 6.4e-10 30.4 2.0 24 212 503 687 492 693 0.59 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_11 - 124 TraF PF13728.1 215 2.2e-05 15.8 0.0 1 1 5.4e-07 2.5e-05 15.6 0.0 130 194 38 104 17 116 0.84 # 7187 # 7558 # -1 # ID=3_11;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.261 3_2 - 720 AAA_29 PF13555.1 62 7.6e-06 17.3 0.0 1 1 3.7e-07 1.8e-05 16.1 0.0 19 39 500 519 490 539 0.85 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 1_5 - 328 RepA_N PF06970.6 76 6.4e-36 113.9 3.5 1 1 1e-36 1.6e-35 112.6 3.5 1 76 14 89 14 89 0.98 # 2947 # 3930 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.280 2_14 - 307 RepA_N PF06970.6 76 1.3e-33 106.6 4.7 1 1 2.4e-34 3.7e-33 105.1 4.7 1 76 30 105 30 105 0.99 # 7850 # 8770 # -1 # ID=2_14;partial=00;start_type=TTG;rbs_motif=TATAA;rbs_spacer=12bp;gc_cont=0.268 2_5 - 79 RepA_N PF06970.6 76 3.3e-13 41.2 3.4 1 1 2.5e-14 3.9e-13 40.9 3.4 1 64 5 68 5 77 0.87 # 2939 # 3175 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.232 3_2 - 720 AAA_5 PF07728.9 139 9.4e-06 17.2 0.0 1 2 1.6e-05 0.00076 11.1 0.0 3 26 507 530 506 542 0.82 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 AAA_5 PF07728.9 139 9.4e-06 17.2 0.0 2 2 0.0036 0.17 3.5 0.0 60 83 621 650 597 704 0.70 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 1_3 - 206 Sdh_cyt PF01127.17 121 0.0013 10.4 15.6 1 2 0.00031 0.015 7.0 1.9 35 120 13 117 2 118 0.59 # 785 # 1402 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_3 - 206 Sdh_cyt PF01127.17 121 0.0013 10.4 15.6 2 2 0.001 0.047 5.4 6.2 33 78 144 189 129 192 0.52 # 785 # 1402 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_8 - 225 HTH_32 PF13565.1 77 4.3e-08 25.8 0.5 1 2 9.5e-07 1.5e-05 17.6 0.1 49 76 26 50 11 51 0.86 # 5119 # 5793 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_8 - 225 HTH_32 PF13565.1 77 4.3e-08 25.8 0.5 2 2 0.0036 0.056 6.2 0.0 29 63 136 171 100 183 0.74 # 5119 # 5793 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 2_4 - 129 HTH_32 PF13565.1 77 1.6e-06 20.8 0.5 1 1 3.7e-07 5.8e-06 19.0 0.0 48 76 25 50 7 51 0.83 # 2201 # 2587 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.336 4_1 - 118 HTH_32 PF13565.1 77 7.3e-06 18.6 0.1 1 1 8.3e-07 1.3e-05 17.8 0.1 48 76 25 50 7 51 0.85 # 59 # 412 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 3_2 - 720 RNA_helicase PF00910.17 107 1.3e-05 17.2 0.2 1 1 1.3e-06 5.9e-05 15.1 0.1 2 53 507 561 506 565 0.77 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/fcd811af-bce1-40b3-b145-334420cca145 # Target file: checkm_output/bins/pGCA_002356675.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002356675.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/fcd811af-bce1-40b3-b145-334420cca145 checkm_output/bins/pGCA_002356675.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Staphylococcus/training_20210111 # Date: Mon Jan 11 14:55:19 2021 # [ok]