# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_5 - 154 DUF972 PF06156.8 107 0.00016 11.6 7.9 1 1 5.3e-06 4.7e-05 13.3 4.9 2 58 70 132 69 152 0.79 # 4052 # 4513 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=15bp;gc_cont=0.292 1_8 - 184 Thioredoxin_2 PF13098.1 112 1.9e-11 33.7 4.4 1 1 8.2e-12 7.4e-11 31.8 4.4 4 91 17 164 13 172 0.64 # 5682 # 6233 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.261 1_8 - 184 Thioredoxin_3 PF13192.1 76 4.9e-06 15.9 0.4 1 2 0.0025 0.022 4.2 0.0 3 18 22 38 20 65 0.69 # 5682 # 6233 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.261 1_8 - 184 Thioredoxin_3 PF13192.1 76 4.9e-06 15.9 0.4 2 2 4.1e-05 0.00037 9.9 0.1 16 56 123 163 107 176 0.84 # 5682 # 6233 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.261 1_8 - 184 Fcf1 PF04900.7 101 2.4e-05 13.9 0.1 1 1 5.1e-06 4.6e-05 13.1 0.1 63 96 134 167 95 169 0.72 # 5682 # 6233 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.261 1_8 - 184 DSBA PF01323.15 193 1.9e-05 13.8 0.2 1 2 4.6e-05 0.00042 9.4 0.1 2 25 22 46 21 96 0.72 # 5682 # 6233 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.261 1_8 - 184 DSBA PF01323.15 193 1.9e-05 13.8 0.2 2 2 0.0039 0.035 3.1 0.0 152 176 141 165 56 177 0.81 # 5682 # 6233 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.261 1_7 - 200 RecX PF02631.11 122 3.4e-05 13.6 3.6 1 3 0.017 0.15 1.8 0.3 69 117 46 93 19 99 0.58 # 4868 # 5467 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.302 1_7 - 200 RecX PF02631.11 122 3.4e-05 13.6 3.6 2 3 0.014 0.13 2.1 0.0 3 24 80 101 78 106 0.83 # 4868 # 5467 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.302 1_7 - 200 RecX PF02631.11 122 3.4e-05 13.6 3.6 3 3 1.9e-05 0.00017 11.4 0.2 57 117 112 182 108 191 0.65 # 4868 # 5467 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.302 1_1 - 285 Rep_3 PF01051.16 222 1.3e-52 168.0 17.1 1 1 1.8e-53 1.7e-52 167.7 17.1 3 222 4 220 2 220 0.94 # 1 # 855 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=TAAA;rbs_spacer=14bp;gc_cont=0.292 1_8 - 184 Thioredoxin PF00085.15 104 1.5e-05 14.2 1.8 1 2 0.0044 0.04 3.2 0.1 19 45 19 46 5 71 0.65 # 5682 # 6233 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.261 1_8 - 184 Thioredoxin PF00085.15 104 1.5e-05 14.2 1.8 2 2 2.9e-05 0.00026 10.2 0.3 41 82 125 166 118 181 0.86 # 5682 # 6233 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.261 1_8 - 184 Thioredoxin_4 PF13462.1 163 3.4e-27 84.9 1.9 1 1 4.3e-28 3.9e-27 84.7 1.9 13 160 18 179 15 182 0.85 # 5682 # 6233 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.261 1_8 - 184 Thioredoxin_8 PF13905.1 95 1e-05 15.2 6.8 1 2 0.0015 0.013 5.2 0.1 5 44 22 67 18 108 0.64 # 5682 # 6233 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.261 1_8 - 184 Thioredoxin_8 PF13905.1 95 1e-05 15.2 6.8 2 2 2.3e-05 0.0002 11.0 3.9 33 88 111 162 95 167 0.82 # 5682 # 6233 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.261 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/dd322621-7bd1-4c7e-8bfb-1ec7911f5b1c # Target file: checkm_output/bins/pGCA_002356175.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002356175.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/dd322621-7bd1-4c7e-8bfb-1ec7911f5b1c checkm_output/bins/pGCA_002356175.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Staphylococcus/training_20210111 # Date: Mon Jan 11 14:55:16 2021 # [ok]