# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_14 - 132 Sterol-sensing PF12349.3 153 4e-05 13.4 0.0 1 1 3.7e-06 5.6e-05 12.9 0.0 42 97 10 67 2 71 0.87 # 13216 # 13611 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.237 1_3 - 254 MarR_2 PF12802.2 62 0.00019 11.4 0.0 1 1 3.4e-05 0.00051 10.0 0.0 23 45 3 25 2 26 0.92 # 1364 # 2125 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.251 1_1 - 203 HTH_22 PF13309.1 64 1.3e-06 18.4 2.5 1 2 0.0017 0.025 4.7 0.2 4 41 110 147 107 149 0.92 # 339 # 947 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_1 - 203 HTH_22 PF13309.1 64 1.3e-06 18.4 2.5 2 2 5.9e-06 8.9e-05 12.5 0.0 44 61 177 194 172 195 0.94 # 339 # 947 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_6 - 225 HEM4 PF02602.10 231 1.8e-05 14.2 0.0 1 1 2.2e-06 3.2e-05 13.4 0.0 125 156 24 54 9 70 0.78 # 6725 # 7399 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_15 - 306 HTH_36 PF13730.1 55 2e-08 24.6 1.2 1 1 3.3e-09 4.9e-08 23.3 1.2 2 55 22 86 21 86 0.87 # 14191 # 15108 # -1 # ID=1_15;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.263 1_6 - 225 AAA_17 PF13207.1 121 3.2e-06 18.2 1.1 1 1 3.1e-07 4.6e-06 17.7 1.1 23 113 24 122 20 205 0.85 # 6725 # 7399 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_8 - 344 tRNA-synt_1b PF00579.20 292 5.4e-73 235.8 0.9 1 1 4.5e-74 6.7e-73 235.5 0.9 7 291 13 295 8 296 0.97 # 8959 # 9990 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.305 1_1 - 203 HTH_29 PF13551.1 112 4.7e-07 20.3 0.1 1 1 1.7e-07 2.5e-06 17.9 0.0 4 34 168 197 166 200 0.91 # 339 # 947 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_3 - 254 HTH_CodY PF08222.6 61 2.4e-05 14.0 0.0 1 1 5.9e-06 8.8e-05 12.1 0.0 8 29 5 26 2 30 0.87 # 1364 # 2125 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.251 1_6 - 225 DDE_Tnp_IS240 PF13610.1 140 3.2e-44 140.5 2.5 1 1 2.9e-45 4.4e-44 140.1 2.5 3 139 72 203 70 204 0.95 # 6725 # 7399 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_1 - 203 HTH_7 PF02796.10 45 1.5e-23 72.7 1.6 1 1 1.1e-24 1.6e-23 72.6 0.3 1 45 147 199 147 199 0.96 # 339 # 947 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_1 - 203 HTH_23 PF13384.1 50 6.4e-09 25.6 0.1 1 1 2.3e-09 1.7e-08 24.3 0.1 6 39 164 197 159 199 0.89 # 339 # 947 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_3 - 254 HTH_23 PF13384.1 50 1.9e-05 14.6 0.0 1 1 4.9e-06 3.7e-05 13.7 0.0 18 42 2 26 2 36 0.84 # 1364 # 2125 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.251 1_3 - 254 TIGR02168 TIGR02168 1181 3.8e-06 14.7 32.4 1 1 3.1e-07 4.7e-06 14.4 32.4 254 432 49 227 19 243 0.59 # 1364 # 2125 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.251 1_3 - 254 HTH_11 PF08279.7 55 4e-06 16.7 0.0 1 1 2.5e-06 1.8e-05 14.6 0.0 17 40 3 26 2 31 0.92 # 1364 # 2125 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.251 1_1 - 203 HTH_11 PF08279.7 55 2e-05 14.5 0.1 1 1 1e-05 7.6e-05 12.6 0.1 7 34 170 194 166 195 0.78 # 339 # 947 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_1 - 203 HTH_28 PF13518.1 52 1.8e-09 27.8 0.0 1 1 2.9e-10 4.4e-09 26.6 0.0 4 34 167 197 166 200 0.94 # 339 # 947 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_3 - 254 HlyD PF00529.15 305 2.1e-06 17.4 8.3 1 1 1.9e-07 2.9e-06 16.9 8.3 43 134 106 196 87 237 0.86 # 1364 # 2125 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.251 1_1 - 203 CENP-B_N PF04218.8 53 1.3e-07 21.3 2.7 1 2 7.7e-05 0.0012 8.6 0.5 13 35 117 139 115 142 0.86 # 339 # 947 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_1 - 203 CENP-B_N PF04218.8 53 1.3e-07 21.3 2.7 2 2 5e-06 7.5e-05 12.4 0.1 16 44 169 197 166 201 0.80 # 339 # 947 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_1 - 203 HTH_Tnp_ISL3 PF13542.1 52 0.0002 10.8 0.4 1 1 2.8e-05 0.00042 9.8 0.1 18 47 166 195 162 195 0.93 # 339 # 947 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_15 - 306 YTH PF04146.10 140 1.6e-05 14.8 0.1 1 1 2.1e-06 3.1e-05 13.8 0.1 36 105 45 123 28 169 0.74 # 14191 # 15108 # -1 # ID=1_15;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.263 1_1 - 203 TetR_N PF00440.18 47 8.1e-05 12.6 0.1 1 1 1.2e-05 0.00018 11.4 0.1 15 35 174 194 174 195 0.93 # 339 # 947 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_6 - 225 rve PF00665.21 120 1.7e-17 53.9 0.7 1 1 2e-18 3e-17 53.1 0.3 2 117 66 174 65 176 0.93 # 6725 # 7399 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_1 - 203 HTH_38 PF13936.1 44 6.1e-06 16.0 2.2 1 1 1.5e-06 1.1e-05 15.2 0.1 15 39 170 194 159 198 0.91 # 339 # 947 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_3 - 254 HTH_38 PF13936.1 44 0.00012 11.9 1.1 1 1 5.1e-05 0.00038 10.3 0.0 21 39 2 20 2 25 0.86 # 1364 # 2125 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.251 1_1 - 203 Sigma70_r4 PF04545.11 50 8.8e-05 12.1 0.1 1 1 1.2e-05 0.00018 11.1 0.1 9 42 160 197 157 198 0.89 # 339 # 947 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_1 - 203 HTH_40 PF14493.1 91 7.1e-05 13.3 1.1 1 1 7.3e-06 0.00011 12.7 0.1 7 31 169 193 165 195 0.92 # 339 # 947 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_6 - 225 DDE_3 PF13358.1 146 9.9e-07 18.8 0.3 1 1 1.2e-07 1.8e-06 18.0 0.3 26 95 74 143 59 206 0.75 # 6725 # 7399 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_6 - 225 DDE_Tnp_IS66 PF03050.9 271 1.5e-06 17.8 3.7 1 2 2.4e-07 3.5e-06 16.6 1.1 16 97 21 96 7 135 0.76 # 6725 # 7399 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_6 - 225 DDE_Tnp_IS66 PF03050.9 271 1.5e-06 17.8 3.7 2 2 0.0083 0.13 1.6 0.1 243 263 163 183 156 189 0.81 # 6725 # 7399 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_15 - 306 RepA_N PF06970.6 76 2.1e-35 110.7 6.4 1 1 5.1e-36 7.7e-35 108.9 6.4 1 76 5 80 5 80 0.99 # 14191 # 15108 # -1 # ID=1_15;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.263 1_6 - 225 HTH_32 PF13565.1 77 8.1e-07 20.1 0.5 1 2 1.7e-05 0.00025 12.1 0.1 49 76 26 50 11 51 0.86 # 6725 # 7399 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_6 - 225 HTH_32 PF13565.1 77 8.1e-07 20.1 0.5 2 2 0.0013 0.02 6.0 0.0 30 63 138 171 101 183 0.75 # 6725 # 7399 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/6ff17adc-d745-427d-89b4-27204b1ce96a # Target file: checkm_output/bins/pGCA_002085695.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002085695.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/6ff17adc-d745-427d-89b4-27204b1ce96a checkm_output/bins/pGCA_002085695.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Staphylococcus/training_20210111 # Date: Mon Jan 11 14:55:06 2021 # [ok]