# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_2 - 159 RepL PF05732.6 165 1.6e-72 233.3 4.8 1 1 6.2e-74 1.9e-72 233.1 4.8 1 148 1 148 1 156 0.98 # 1402 # 1878 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_18 - 209 DUF258 PF03193.11 161 2e-09 28.1 0.1 1 1 1e-10 3.1e-09 27.4 0.1 13 67 4 59 1 70 0.87 # 14914 # 15540 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_11 - 248 GerE PF00196.14 58 5.4e-06 16.9 1.2 1 2 0.00047 0.007 7.0 0.1 19 42 2 25 2 27 0.90 # 10202 # 10945 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.294 1_11 - 248 GerE PF00196.14 58 5.4e-06 16.9 1.2 2 2 0.00016 0.0024 8.5 0.1 21 45 97 121 94 133 0.87 # 10202 # 10945 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.294 1_22 - 203 GerE PF00196.14 58 0.0001 12.9 0.1 1 1 1.3e-05 0.00019 12.0 0.1 11 35 168 192 166 197 0.93 # 18583 # 19191 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_18 - 209 TIGR00157 TIGR00157 247 0.0001 12.8 0.1 1 1 5.1e-06 0.00015 12.2 0.1 123 144 28 49 3 67 0.76 # 14914 # 15540 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_1 - 537 Peptidase_M56 PF05569.6 299 1.2e-80 261.8 11.4 1 1 4e-82 1.2e-80 261.8 11.4 56 299 2 249 1 249 0.99 # 1 # 1611 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.263 1_18 - 209 TIGR01978 TIGR01978 243 1.8e-23 74.1 4.0 1 1 3.8e-24 1.1e-22 71.4 4.0 2 208 3 195 2 201 0.81 # 14914 # 15540 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_13 - 114 Phage_CI_repr PF07022.8 66 6.1e-09 27.2 0.0 1 1 2.5e-10 7.6e-09 26.9 0.0 14 62 17 65 5 69 0.85 # 11736 # 12077 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_18 - 209 AAA_18 PF13238.1 129 0.00031 12.3 4.4 1 1 5.4e-05 0.0016 10.0 4.4 3 64 32 120 31 203 0.63 # 14914 # 15540 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_18 - 209 AAA_13 PF13166.1 712 1.1e-07 21.9 3.1 1 2 0.00016 0.0047 6.5 1.0 23 75 34 83 13 119 0.63 # 14914 # 15540 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_18 - 209 AAA_13 PF13166.1 712 1.1e-07 21.9 3.1 2 2 2.9e-07 8.7e-06 15.5 0.3 500 578 131 198 99 205 0.82 # 14914 # 15540 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_3 - 198 MarR_2 PF12802.2 62 1.9e-07 22.0 0.0 1 2 0.0059 0.18 2.8 0.1 23 45 112 134 101 137 0.86 # 2245 # 2838 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_3 - 198 MarR_2 PF12802.2 62 1.9e-07 22.0 0.0 2 2 3e-07 8.9e-06 16.6 0.0 6 48 148 187 144 188 0.90 # 2245 # 2838 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 3_1 - 245 Methyltransf_11 PF08241.7 95 1.7e-06 19.7 0.0 1 1 1.1e-07 3.3e-06 18.8 0.0 2 60 36 94 35 99 0.91 # 220 # 954 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 1_18 - 209 TIGR03598 TIGR03598 186 3e-05 14.6 0.9 1 1 1.4e-06 4.3e-05 14.1 0.1 16 44 25 53 16 58 0.83 # 14914 # 15540 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 3_2 - 159 HTH_Crp_2 PF13545.1 76 6.4e-07 20.4 0.2 1 1 6.8e-08 1e-06 19.7 0.2 30 67 78 115 60 122 0.88 # 1402 # 1878 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_13 - 114 HTH_Crp_2 PF13545.1 76 6.3e-05 14.0 0.0 1 1 8.8e-06 0.00013 13.0 0.0 29 47 16 34 2 35 0.87 # 11736 # 12077 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_18 - 209 Zeta_toxin PF06414.7 201 4e-05 14.0 0.0 1 1 1.9e-06 5.8e-05 13.4 0.0 14 62 25 74 15 96 0.82 # 14914 # 15540 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 3_1 - 245 Methyltransf_4 PF02390.12 197 5.2e-06 16.8 0.3 1 2 1.7e-07 5.2e-06 16.8 0.3 20 97 31 101 4 104 0.77 # 220 # 954 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 3_1 - 245 Methyltransf_4 PF02390.12 197 5.2e-06 16.8 0.3 2 2 0.093 2.8 -1.9 0.1 136 159 187 207 168 229 0.62 # 220 # 954 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 1_13 - 114 HTH_17 PF12728.2 51 5.4e-05 14.7 0.0 1 1 3.7e-06 0.00011 13.7 0.0 4 21 18 35 16 53 0.86 # 11736 # 12077 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_6 - 272 AAA_22 PF13401.1 131 1.4e-28 90.9 0.0 1 1 1.6e-29 2.4e-28 90.1 0.0 2 131 25 171 24 171 0.86 # 4246 # 5061 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.298 1_18 - 209 AAA_22 PF13401.1 131 1.2e-06 19.9 1.0 1 1 2.7e-07 4.1e-06 18.2 1.0 4 129 27 195 24 197 0.73 # 14914 # 15540 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_13 - 114 HTH_19 PF12844.2 64 1.8e-18 57.7 0.1 1 1 1.9e-19 2.8e-18 57.0 0.1 2 61 5 64 4 66 0.96 # 11736 # 12077 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_22 - 203 HTH_19 PF12844.2 64 0.00018 12.8 0.2 1 1 2.6e-05 0.00039 11.7 0.2 14 36 177 199 171 202 0.91 # 18583 # 19191 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_13 - 114 Sigma70_r4_2 PF08281.7 54 5.2e-05 14.0 0.0 1 1 6.8e-06 0.0001 13.0 0.0 22 45 11 34 9 35 0.91 # 11736 # 12077 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_22 - 203 Sigma70_r4_2 PF08281.7 54 8.2e-05 13.3 0.7 1 2 0.093 1.4 -0.2 0.0 4 32 46 74 44 74 0.88 # 18583 # 19191 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_22 - 203 Sigma70_r4_2 PF08281.7 54 8.2e-05 13.3 0.7 2 2 4.9e-05 0.00074 10.3 0.2 14 44 164 193 163 194 0.91 # 18583 # 19191 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_3 - 198 Mga PF05043.8 87 3e-07 22.0 0.4 1 2 0.0074 0.22 3.1 0.1 24 52 104 132 74 137 0.83 # 2245 # 2838 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_3 - 198 Mga PF05043.8 87 3e-07 22.0 0.4 2 2 4.6e-07 1.4e-05 16.6 0.0 17 55 148 185 144 187 0.92 # 2245 # 2838 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_3 - 198 HTH_30 PF13556.1 59 9.4e-06 16.5 0.0 1 1 6.3e-07 1.9e-05 15.5 0.0 3 38 151 186 150 187 0.94 # 2245 # 2838 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 3_1 - 245 Methyltransf_31 PF13847.1 152 5.2e-06 17.3 2.8 1 1 2.9e-07 8.8e-06 16.6 2.6 2 76 29 98 28 225 0.74 # 220 # 954 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 3_2 - 159 FUR PF01475.14 120 7.9e-06 17.0 0.1 1 2 0.0067 0.2 2.8 0.0 78 102 12 36 2 50 0.71 # 1402 # 1878 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 3_2 - 159 FUR PF01475.14 120 7.9e-06 17.0 0.1 2 2 9e-06 0.00027 12.1 0.1 12 60 59 108 53 111 0.76 # 1402 # 1878 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 4_1 - 335 Ribosomal_L11 PF00298.14 69 0.00015 13.2 0.9 1 1 4.3e-05 0.00064 11.1 0.1 16 43 23 51 17 62 0.91 # 203 # 1207 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=TAAAA;rbs_spacer=15bp;gc_cont=0.291 2_2 - 333 Ribosomal_L11 PF00298.14 69 0.00051 11.4 1.6 1 2 0.00018 0.0027 9.1 0.1 16 43 23 51 17 61 0.89 # 665 # 1663 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.305 2_2 - 333 Ribosomal_L11 PF00298.14 69 0.00051 11.4 1.6 2 2 0.088 1.3 0.5 0.3 28 57 209 238 205 240 0.85 # 665 # 1663 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.305 1_18 - 209 AAA_23 PF13476.1 202 0.00011 13.8 9.5 1 1 2.1e-05 0.00063 11.3 9.5 10 131 17 138 9 198 0.58 # 14914 # 15540 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_13 - 114 HTH_31 PF13560.1 64 1.3e-13 42.3 0.0 1 1 5.2e-15 1.6e-13 42.0 0.0 2 59 3 59 2 66 0.95 # 11736 # 12077 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_3 - 198 HTH_22 PF13309.1 64 5.3e-08 23.8 0.3 1 2 0.039 0.39 1.8 0.0 23 38 70 85 64 86 0.87 # 2245 # 2838 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_3 - 198 HTH_22 PF13309.1 64 5.3e-08 23.8 0.3 2 2 2.7e-07 2.7e-06 18.4 0.1 17 64 141 182 129 182 0.75 # 2245 # 2838 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_22 - 203 HTH_22 PF13309.1 64 1.2e-06 19.5 1.4 1 2 0.0027 0.027 5.6 0.2 3 41 109 147 107 149 0.93 # 18583 # 19191 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_22 - 203 HTH_22 PF13309.1 64 1.2e-06 19.5 1.4 2 2 2.9e-05 0.00029 11.9 0.0 43 61 176 194 172 195 0.94 # 18583 # 19191 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_11 - 248 HTH_22 PF13309.1 64 4.9e-05 14.3 0.1 1 1 3.7e-05 0.00037 11.5 0.0 43 64 2 23 1 23 0.91 # 10202 # 10945 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.294 1_13 - 114 HTH_37 PF13744.1 80 2.6e-08 24.9 0.3 1 1 1.2e-09 3.6e-08 24.4 0.3 18 56 2 40 1 63 0.82 # 11736 # 12077 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_3 - 198 HTH_36 PF13730.1 55 1e-05 16.9 0.1 1 1 2.1e-06 2.1e-05 15.9 0.1 28 52 163 187 144 188 0.92 # 2245 # 2838 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_10 - 127 HTH_36 PF13730.1 55 1.1e-05 16.7 0.1 1 1 2.3e-06 2.3e-05 15.8 0.1 2 49 66 125 65 126 0.89 # 9516 # 9896 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.241 3_2 - 159 HTH_36 PF13730.1 55 0.00016 13.0 0.0 1 1 3e-05 0.0003 12.2 0.0 26 54 77 105 61 106 0.84 # 1402 # 1878 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_2 - 127 Penicillinase_R PF03965.11 115 1.2e-37 119.8 1.3 1 1 4.3e-39 1.3e-37 119.7 1.3 1 114 8 121 8 122 0.99 # 1601 # 1981 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.244 3_1 - 245 RrnaAD PF00398.15 262 1.2e-75 245.0 4.4 1 1 4.6e-77 1.4e-75 244.9 4.4 1 262 1 244 1 244 0.97 # 220 # 954 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 3_1 - 245 MTS PF05175.9 170 9.3e-06 16.3 0.0 1 1 4.8e-07 1.4e-05 15.7 0.0 25 113 24 109 14 125 0.83 # 220 # 954 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 1_18 - 209 AAA_17 PF13207.1 121 8.5e-06 17.9 0.2 1 1 8e-07 2.4e-05 16.4 0.2 3 56 31 86 30 207 0.73 # 14914 # 15540 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 3_1 - 245 DOT1 PF08123.8 205 9.5e-06 16.2 1.3 1 2 1.9e-06 5.6e-05 13.7 0.0 29 91 17 77 13 116 0.83 # 220 # 954 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 3_1 - 245 DOT1 PF08123.8 205 9.5e-06 16.2 1.3 2 2 0.016 0.47 0.9 0.6 78 133 180 229 169 236 0.57 # 220 # 954 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 1_4 - 223 DUF1804 PF08822.6 165 0.00011 13.2 0.0 1 1 6.5e-06 0.00019 12.4 0.0 7 47 21 61 14 63 0.89 # 2810 # 3478 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_8 - 116 HTH_34 PF13601.1 80 0.00011 13.5 0.2 1 1 5.4e-06 0.00016 12.9 0.2 2 49 44 91 43 96 0.93 # 6628 # 6975 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.259 1_4 - 223 HTH_29 PF13551.1 112 8e-08 23.7 0.0 1 1 1.5e-08 1.5e-07 22.8 0.0 13 76 34 96 29 118 0.81 # 2810 # 3478 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_22 - 203 HTH_29 PF13551.1 112 1.2e-06 19.9 0.1 1 1 5e-07 5e-06 17.9 0.0 4 34 168 197 166 200 0.92 # 18583 # 19191 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_3 - 198 HTH_29 PF13551.1 112 6e-06 17.7 0.7 1 2 0.052 0.52 1.7 0.2 33 67 122 154 119 160 0.71 # 2245 # 2838 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_3 - 198 HTH_29 PF13551.1 112 6e-06 17.7 0.7 2 2 8.5e-06 8.5e-05 13.9 0.0 7 39 156 187 154 192 0.89 # 2245 # 2838 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_2 - 127 MarR PF01047.17 59 4.6e-09 27.2 0.1 1 1 8e-10 8e-09 26.4 0.1 1 54 8 65 8 65 0.97 # 1601 # 1981 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.244 1_3 - 198 MarR PF01047.17 59 1.5e-06 19.1 0.1 1 1 3.7e-07 3.7e-06 17.9 0.0 1 45 145 188 145 188 0.91 # 2245 # 2838 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 3_2 - 159 MarR PF01047.17 59 4.7e-05 14.3 0.3 1 1 8e-06 8e-05 13.6 0.3 19 50 78 109 64 111 0.86 # 1402 # 1878 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 3_1 - 245 Methyltransf_12 PF08242.7 99 0.00022 13.0 0.2 1 1 1.9e-05 0.00058 11.6 0.0 2 56 36 88 35 114 0.83 # 220 # 954 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 1_8 - 116 HTH_20 PF12840.2 61 1.8e-05 15.7 0.0 1 1 2.3e-06 2.3e-05 15.4 0.0 15 57 48 89 34 93 0.87 # 6628 # 6975 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.259 3_2 - 159 HTH_20 PF12840.2 61 2.2e-05 15.5 0.0 1 1 3.5e-06 3.5e-05 14.8 0.0 25 56 77 108 65 111 0.93 # 1402 # 1878 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_3 - 198 HTH_20 PF12840.2 61 0.00023 12.2 0.0 1 1 0.00013 0.0013 9.8 0.0 15 50 152 186 149 189 0.90 # 2245 # 2838 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_8 - 116 HTH_5 PF01022.15 47 1.2e-17 54.6 1.6 1 1 6.8e-19 2e-17 53.9 1.6 1 45 41 86 41 88 0.95 # 6628 # 6975 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.259 1_3 - 198 Terminase_5 PF06056.7 58 0.00017 12.3 0.1 1 1 1.1e-05 0.00032 11.5 0.1 7 36 154 183 153 194 0.88 # 2245 # 2838 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_3 - 198 HTH_24 PF13412.1 48 6.9e-12 35.9 0.1 1 1 8.5e-13 1.3e-11 35.0 0.1 1 44 145 187 145 188 0.97 # 2245 # 2838 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 3_2 - 159 HTH_24 PF13412.1 48 9.3e-08 22.7 1.5 1 2 0.012 0.18 2.6 0.0 5 21 57 73 55 77 0.89 # 1402 # 1878 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 3_2 - 159 HTH_24 PF13412.1 48 9.3e-08 22.7 1.5 2 2 8.3e-08 1.2e-06 19.1 0.4 18 48 77 107 76 107 0.96 # 1402 # 1878 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_18 - 209 AAA_21 PF13304.1 303 7.3e-17 53.4 5.1 1 1 7.2e-16 2.2e-14 45.3 5.1 3 301 31 193 29 195 0.88 # 14914 # 15540 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_3 - 198 HTH_AsnC-type PF13404.1 42 6.7e-05 13.7 0.0 1 1 4.7e-06 0.00014 12.6 0.0 3 42 147 185 145 185 0.87 # 2245 # 2838 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_4 - 223 HTH_Tnp_Mu_2 PF09039.6 108 5.3e-05 14.2 0.0 1 1 3.3e-06 9.9e-05 13.3 0.0 30 102 77 148 50 155 0.82 # 2810 # 3478 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_3 - 198 HTH_IclR PF09339.5 52 1.2e-05 16.2 0.0 1 1 1.1e-06 3.2e-05 14.8 0.0 7 43 151 185 147 187 0.86 # 2245 # 2838 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_22 - 203 HTH_7 PF02796.10 45 8.5e-24 74.5 1.4 1 1 7.2e-25 1.1e-23 74.1 0.2 1 45 147 199 147 199 0.96 # 18583 # 19191 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_3 - 198 HTH_7 PF02796.10 45 1.6e-20 64.0 0.1 1 1 2.3e-21 3.5e-20 62.9 0.1 1 44 140 183 140 184 0.98 # 2245 # 2838 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_18 - 209 SbcCD_C PF13558.1 90 6.8e-06 17.2 0.0 1 1 3e-06 9.1e-05 13.6 0.0 11 88 110 174 102 176 0.81 # 14914 # 15540 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_3 - 198 HTH_DeoR PF08220.7 57 0.00016 12.4 0.0 1 1 4e-05 0.0004 11.2 0.0 17 41 163 187 148 189 0.85 # 2245 # 2838 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_2 - 127 HTH_DeoR PF08220.7 57 0.00024 11.9 0.3 1 1 0.0001 0.001 9.9 0.1 8 46 18 60 14 62 0.76 # 1601 # 1981 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.244 1_11 - 248 HTH_DeoR PF08220.7 57 0.00028 11.7 2.0 1 1 4.5e-05 0.00045 11.0 0.0 16 33 3 20 2 30 0.84 # 10202 # 10945 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.294 1_14 - 287 Rep_3 PF01051.16 222 8.9e-50 160.5 17.7 1 1 3.7e-51 1.1e-49 160.2 17.7 3 222 4 220 2 220 0.95 # 12164 # 13024 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.267 1_3 - 198 Phage_antitermQ PF06530.7 126 8.9e-05 13.3 0.0 1 2 0.028 0.85 0.4 0.0 52 94 58 100 38 112 0.82 # 2245 # 2838 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_3 - 198 Phage_antitermQ PF06530.7 126 8.9e-05 13.3 0.0 2 2 2.3e-05 0.0007 10.4 0.0 62 103 144 185 141 191 0.90 # 2245 # 2838 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_6 - 272 AAA PF00004.24 132 1.7e-06 19.5 0.1 1 2 0.00028 0.0084 7.5 0.0 3 14 32 43 31 58 0.89 # 4246 # 5061 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.298 1_6 - 272 AAA PF00004.24 132 1.7e-06 19.5 0.1 2 2 6.1e-05 0.0018 9.7 0.0 34 111 110 167 65 189 0.83 # 4246 # 5061 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.298 2_4 - 163 Aminoglyc_resit PF10706.4 174 6.7e-11 33.3 0.1 1 1 2.7e-12 8e-11 33.0 0.1 17 129 20 139 6 161 0.77 # 4844 # 5332 # -1 # ID=2_4;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.286 1_18 - 209 AAA_10 PF12846.2 304 4.9e-05 14.0 0.2 1 1 3e-06 9.1e-05 13.1 0.1 3 22 29 48 27 63 0.81 # 14914 # 15540 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_6 - 272 DEAD PF00270.24 169 0.00053 10.7 1.6 1 1 4.7e-05 0.0014 9.3 1.0 113 143 121 151 30 162 0.80 # 4246 # 5061 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.298 1_18 - 209 AAA_16 PF13191.1 185 5.3e-05 14.5 0.4 1 1 3e-06 8.9e-05 13.7 0.4 24 42 27 45 17 198 0.82 # 14914 # 15540 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_22 - 203 HTH_23 PF13384.1 50 1.9e-10 31.4 0.3 1 1 9.2e-11 4.6e-10 30.2 0.1 6 39 164 197 159 199 0.89 # 18583 # 19191 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_3 - 198 HTH_23 PF13384.1 50 6.1e-09 26.6 0.0 1 1 3e-09 1.5e-08 25.4 0.0 13 43 156 185 151 193 0.87 # 2245 # 2838 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_13 - 114 HTH_23 PF13384.1 50 7.3e-08 23.2 0.0 1 1 2.4e-08 1.2e-07 22.5 0.0 8 38 4 36 1 42 0.85 # 11736 # 12077 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_4 - 223 HTH_23 PF13384.1 50 2.1e-07 21.8 0.0 1 1 9.3e-08 4.7e-07 20.6 0.0 2 49 17 65 16 66 0.89 # 2810 # 3478 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_11 - 248 HTH_23 PF13384.1 50 5.4e-06 17.3 0.0 1 1 3.4e-06 1.7e-05 15.7 0.0 18 42 2 26 2 32 0.89 # 10202 # 10945 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.294 3_2 - 159 HTH_23 PF13384.1 50 0.0002 12.3 0.0 1 1 7.8e-05 0.00039 11.4 0.0 19 45 78 103 68 108 0.88 # 1402 # 1878 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_13 - 114 Sigma70_ECF PF07638.6 185 0.00016 12.6 0.0 1 1 8.8e-06 0.00026 11.9 0.0 145 170 9 34 2 42 0.86 # 11736 # 12077 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_3 - 198 UPF0122 PF04297.9 101 3e-05 15.2 0.1 1 1 3e-06 9e-05 13.7 0.0 18 59 145 186 142 190 0.92 # 2245 # 2838 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_2 - 127 S-AdoMet_synt_M PF02772.11 120 0.00017 12.8 1.9 1 2 1.4e-05 0.00042 11.5 1.2 64 106 21 62 3 74 0.78 # 1601 # 1981 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.244 1_2 - 127 S-AdoMet_synt_M PF02772.11 120 0.00017 12.8 1.9 2 2 0.045 1.3 0.2 0.0 64 90 89 115 70 126 0.62 # 1601 # 1981 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.244 1_11 - 248 TIGR02168 TIGR02168 1181 0.0028 6.2 35.4 1 1 0.00012 0.0036 5.8 35.4 239 452 28 235 3 240 0.64 # 10202 # 10945 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.294 1_3 - 198 HTH_11 PF08279.7 55 4.6e-09 27.1 0.0 1 1 1.8e-09 1.1e-08 25.9 0.0 4 41 151 186 147 189 0.83 # 2245 # 2838 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_11 - 248 HTH_11 PF08279.7 55 1.8e-07 22.0 0.9 1 1 9.8e-08 5.9e-07 20.4 0.1 17 40 3 26 2 31 0.93 # 10202 # 10945 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.294 1_22 - 203 HTH_11 PF08279.7 55 1.3e-05 16.0 0.1 1 1 6e-06 3.6e-05 14.6 0.1 6 34 169 194 166 195 0.81 # 18583 # 19191 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_13 - 114 HTH_11 PF08279.7 55 9.5e-05 13.3 0.1 1 1 2.6e-05 0.00016 12.6 0.1 13 34 14 34 2 34 0.78 # 11736 # 12077 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 3_2 - 159 HTH_11 PF08279.7 55 0.00011 13.1 0.2 1 1 3.4e-05 0.0002 12.2 0.2 16 43 77 104 61 112 0.82 # 1402 # 1878 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_13 - 114 P22_Cro PF14549.1 60 9.7e-06 16.5 0.1 1 1 5.6e-07 1.7e-05 15.8 0.1 11 30 17 36 16 44 0.89 # 11736 # 12077 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_4 - 223 HTH_28 PF13518.1 52 1.8e-12 38.3 0.0 1 1 3.7e-12 2.2e-11 34.9 0.1 1 45 21 66 21 73 0.94 # 2810 # 3478 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_22 - 203 HTH_28 PF13518.1 52 2e-09 28.6 0.0 1 1 7.7e-10 4.6e-09 27.4 0.0 4 34 167 197 166 200 0.94 # 18583 # 19191 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_13 - 114 HTH_28 PF13518.1 52 3.7e-06 18.2 0.2 1 1 1.4e-06 8.3e-06 17.0 0.1 11 32 14 35 3 38 0.84 # 11736 # 12077 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_3 - 198 HTH_28 PF13518.1 52 1.2e-05 16.5 0.0 1 1 5.5e-06 3.3e-05 15.1 0.0 8 37 156 185 155 190 0.92 # 2245 # 2838 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 3_2 - 159 HTH_28 PF13518.1 52 2.8e-05 15.4 0.0 1 1 1.3e-05 7.5e-05 14.0 0.0 1 41 56 105 56 111 0.82 # 1402 # 1878 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_18 - 209 Dynamin_N PF00350.18 168 7.9e-05 13.7 2.5 1 1 8e-06 0.00024 12.2 2.5 2 30 31 59 31 196 0.69 # 14914 # 15540 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 3_1 - 245 Methyltransf_26 PF13659.1 117 4.5e-09 27.6 0.0 1 1 2e-10 6e-09 27.2 0.0 2 81 32 105 31 148 0.90 # 220 # 954 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 1_3 - 198 HTH_Tnp_4 PF13613.1 53 2.3e-05 15.2 0.0 1 1 1.5e-06 4.6e-05 14.2 0.0 24 45 165 186 159 187 0.90 # 2245 # 2838 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_6 - 272 cobW PF02492.14 178 0.00035 11.2 0.8 1 1 1.8e-05 0.00053 10.7 0.1 113 171 94 156 65 162 0.77 # 4246 # 5061 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.298 1_18 - 209 MMR_HSR1 PF01926.18 116 3e-06 18.5 2.4 1 1 2.3e-07 6.8e-06 17.3 2.4 3 100 31 142 29 204 0.63 # 14914 # 15540 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 3_1 - 245 PCMT PF01135.14 210 1.1e-06 19.5 0.0 1 1 1e-07 3.1e-06 18.0 0.0 53 126 10 80 3 86 0.86 # 220 # 954 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 1_22 - 203 CENP-B_N PF04218.8 53 3.9e-09 27.1 3.7 1 2 0.00037 0.011 6.4 0.3 13 35 117 139 115 142 0.85 # 18583 # 19191 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_22 - 203 CENP-B_N PF04218.8 53 3.9e-09 27.1 3.7 2 2 6.8e-09 2.1e-07 21.6 0.3 14 46 167 199 166 202 0.91 # 18583 # 19191 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_18 - 209 NTPase_1 PF03266.10 168 7.7e-05 13.6 0.4 1 2 0.0012 0.036 5.0 0.0 3 19 31 47 29 57 0.86 # 14914 # 15540 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_18 - 209 NTPase_1 PF03266.10 168 7.7e-05 13.6 0.4 2 2 0.00029 0.0086 7.0 0.2 74 136 128 192 104 207 0.74 # 14914 # 15540 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 3_2 - 159 GntR PF00392.16 64 7.8e-05 13.4 0.0 1 1 1.1e-05 0.00016 12.4 0.0 17 59 69 111 57 112 0.87 # 1402 # 1878 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_3 - 198 GntR PF00392.16 64 0.00026 11.7 0.0 1 1 3.3e-05 0.00049 10.8 0.0 23 51 162 187 151 188 0.83 # 2245 # 2838 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_9 - 206 Virul_fac_BrkB PF03631.10 260 0.0056 7.2 24.4 1 2 3.2e-05 0.00097 9.7 8.5 166 235 11 79 1 81 0.84 # 6994 # 7611 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.272 1_9 - 206 Virul_fac_BrkB PF03631.10 260 0.0056 7.2 24.4 2 2 0.0021 0.064 3.7 8.0 115 180 135 191 107 193 0.63 # 6994 # 7611 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.272 1_11 - 248 Glu_synthase PF01645.12 368 0.0031 7.6 7.6 1 2 0.035 1.1 -0.8 0.7 15 60 48 92 23 103 0.60 # 10202 # 10945 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.294 1_11 - 248 Glu_synthase PF01645.12 368 0.0031 7.6 7.6 2 2 1.6e-05 0.00048 10.2 3.2 10 71 99 159 87 163 0.82 # 10202 # 10945 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.294 1_18 - 209 AAA_15 PF13175.1 415 6.6e-09 26.4 8.7 1 2 4.7e-06 0.00014 12.1 6.6 8 110 12 106 4 123 0.60 # 14914 # 15540 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_18 - 209 AAA_15 PF13175.1 415 6.6e-09 26.4 8.7 2 2 4.6e-07 1.4e-05 15.4 2.8 291 414 87 193 62 194 0.67 # 14914 # 15540 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_18 - 209 FeoB_N PF02421.13 156 8.8e-05 13.0 4.1 1 3 4.4e-05 0.0013 9.2 0.0 3 24 30 51 28 56 0.89 # 14914 # 15540 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_18 - 209 FeoB_N PF02421.13 156 8.8e-05 13.0 4.1 2 3 0.095 2.8 -1.6 0.0 94 133 94 131 84 146 0.57 # 14914 # 15540 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_18 - 209 FeoB_N PF02421.13 156 8.8e-05 13.0 4.1 3 3 0.0016 0.049 4.1 1.0 86 131 162 207 131 208 0.77 # 14914 # 15540 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_5 - 277 rve_3 PF13683.1 67 1.4e-06 19.0 0.2 1 1 2.3e-07 7e-06 16.8 0.1 2 36 54 99 53 128 0.73 # 3423 # 4253 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.323 1_22 - 203 TetR_N PF00440.18 47 0.00011 13.0 0.1 1 1 2e-05 0.00029 11.7 0.0 18 35 177 194 173 195 0.92 # 18583 # 19191 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_3 - 198 TetR_N PF00440.18 47 0.0002 12.3 0.1 1 1 5.2e-05 0.00078 10.4 0.0 16 36 160 180 158 180 0.92 # 2245 # 2838 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_5 - 277 rve PF00665.21 120 2.1e-15 48.1 0.0 1 1 3.3e-16 5e-15 46.9 0.0 53 119 9 81 3 82 0.87 # 3423 # 4253 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.323 1_4 - 223 rve PF00665.21 120 9.5e-10 29.9 0.0 1 1 1.3e-10 1.9e-09 28.9 0.0 2 46 156 205 155 216 0.88 # 2810 # 3478 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_13 - 114 HTH_25 PF13413.1 62 5.9e-06 17.1 0.1 1 1 3.1e-07 9.2e-06 16.5 0.1 3 28 8 33 6 41 0.87 # 11736 # 12077 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_4 - 223 HTH_Tnp_1 PF01527.15 76 6.4e-06 17.4 0.0 1 1 1.1e-06 1.1e-05 16.6 0.0 10 55 20 66 14 95 0.78 # 2810 # 3478 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_22 - 203 HTH_Tnp_1 PF01527.15 76 1.9e-05 15.8 0.2 1 2 0.081 0.81 1.0 0.0 6 36 107 137 106 144 0.77 # 18583 # 19191 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_22 - 203 HTH_Tnp_1 PF01527.15 76 1.9e-05 15.8 0.2 2 2 2.4e-05 0.00024 12.3 0.0 15 42 168 194 164 197 0.88 # 18583 # 19191 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_11 - 248 HTH_Tnp_1 PF01527.15 76 0.00011 13.4 0.8 1 2 0.00025 0.0025 9.0 0.0 24 50 2 29 1 58 0.72 # 10202 # 10945 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.294 1_11 - 248 HTH_Tnp_1 PF01527.15 76 0.00011 13.4 0.8 2 2 0.046 0.46 1.8 0.7 36 74 107 146 102 148 0.77 # 10202 # 10945 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.294 1_13 - 114 Phage_terminase PF10668.4 60 0.00013 13.0 0.4 1 1 6.8e-06 0.0002 12.4 0.4 25 47 18 40 8 46 0.87 # 11736 # 12077 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_22 - 203 HTH_38 PF13936.1 44 1.2e-07 22.4 0.3 1 1 1.2e-08 1.2e-07 22.4 0.3 15 39 170 194 159 195 0.91 # 18583 # 19191 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_3 - 198 HTH_38 PF13936.1 44 6.5e-07 20.1 0.0 1 1 1.6e-07 1.6e-06 18.9 0.0 4 41 144 181 141 183 0.90 # 2245 # 2838 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_13 - 114 HTH_38 PF13936.1 44 5.1e-05 14.1 0.0 1 1 7.6e-06 7.6e-05 13.5 0.0 12 39 6 34 3 35 0.88 # 11736 # 12077 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 2_4 - 163 NTP_transf_5 PF14907.1 249 6.1e-09 26.7 0.3 1 1 2.3e-10 6.8e-09 26.6 0.3 88 188 39 143 2 156 0.73 # 4844 # 5332 # -1 # ID=2_4;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.286 3_1 - 245 Methyltransf_23 PF13489.1 161 1.5e-05 15.9 0.0 1 1 1.5e-06 4.4e-05 14.5 0.0 11 67 17 78 8 119 0.71 # 220 # 954 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 1_13 - 114 Sigma70_r4 PF04545.11 50 5.3e-06 17.0 0.0 1 1 1.1e-06 1.7e-05 15.4 0.0 15 41 10 36 5 38 0.87 # 11736 # 12077 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_22 - 203 Sigma70_r4 PF04545.11 50 9.3e-06 16.2 0.2 1 1 1.2e-06 1.9e-05 15.2 0.2 9 41 160 196 157 198 0.92 # 18583 # 19191 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_2 - 127 HTH_27 PF13463.1 68 0.00019 13.0 0.0 1 2 4e-05 0.0012 10.4 0.0 4 54 11 64 8 70 0.92 # 1601 # 1981 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.244 1_2 - 127 HTH_27 PF13463.1 68 0.00019 13.0 0.0 2 2 0.058 1.7 0.3 0.0 6 29 97 121 94 121 0.83 # 1601 # 1981 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.244 1_1 - 537 SprT-like PF10263.4 157 5.6e-05 14.0 0.0 1 1 4.6e-06 0.00014 12.8 0.0 7 71 96 157 91 160 0.79 # 1 # 1611 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.263 1_22 - 203 HTH_Tnp_IS630 PF01710.11 120 9.2e-06 16.6 0.1 1 1 1.4e-06 2.2e-05 15.4 0.1 9 38 166 195 163 201 0.89 # 18583 # 19191 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_3 - 198 HTH_Tnp_IS630 PF01710.11 120 0.00012 13.0 0.0 1 1 1.6e-05 0.00023 12.1 0.0 17 46 159 188 144 196 0.79 # 2245 # 2838 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_9 - 206 Cad PF03596.8 191 2.5e-85 276.2 16.6 1 1 9.4e-87 2.8e-85 276.0 16.6 1 191 12 203 12 203 0.99 # 6994 # 7611 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.272 1_22 - 203 HTH_40 PF14493.1 91 8.7e-06 17.2 0.1 1 1 1.4e-06 2.1e-05 15.9 0.1 7 31 169 193 165 194 0.92 # 18583 # 19191 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_3 - 198 HTH_40 PF14493.1 91 2.7e-05 15.6 0.0 1 1 3.6e-06 5.4e-05 14.7 0.0 8 41 155 188 153 194 0.88 # 2245 # 2838 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_13 - 114 HTH_3 PF01381.17 55 1.2e-19 61.2 0.1 1 1 1.1e-20 1.6e-19 60.8 0.1 1 54 7 60 7 61 0.97 # 11736 # 12077 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_22 - 203 HTH_3 PF01381.17 55 8.2e-05 13.7 0.7 1 1 1.2e-05 0.00017 12.7 0.1 11 32 177 198 170 201 0.85 # 18583 # 19191 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 3_2 - 159 FaeA PF04703.7 62 0.00019 12.8 0.1 1 1 1.1e-05 0.00032 12.1 0.1 13 47 74 108 56 112 0.77 # 1402 # 1878 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_3 - 198 TrmB PF01978.14 68 3.6e-07 21.1 0.0 1 1 2.8e-08 8.4e-07 19.9 0.0 23 49 161 187 145 189 0.83 # 2245 # 2838 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_13 - 114 HTH_26 PF13443.1 63 4.1e-08 24.6 0.0 1 1 1.6e-09 4.9e-08 24.4 0.0 8 58 13 62 2 66 0.89 # 11736 # 12077 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_18 - 209 ABC_tran PF00005.22 137 2.9e-37 119.2 0.1 1 1 1.3e-38 4e-37 118.8 0.1 1 136 17 159 17 160 0.93 # 14914 # 15540 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_1 - 537 Peptidase_M48 PF01435.13 226 7.6e-05 13.5 0.1 1 1 4.9e-06 0.00015 12.6 0.1 63 129 123 186 62 224 0.75 # 1 # 1611 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.263 3_1 - 245 Methyltransf_18 PF12847.2 112 6.5e-08 24.4 0.0 1 1 3e-09 9.1e-08 23.9 0.0 3 66 32 91 30 151 0.76 # 220 # 954 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 1_22 - 203 HTH_8 PF02954.14 42 8.4e-05 13.4 0.0 1 1 8.9e-06 0.00027 11.8 0.0 17 37 174 194 169 196 0.89 # 18583 # 19191 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_18 - 209 SMC_N PF02463.14 220 9.8e-08 22.6 6.2 1 1 1.2e-08 3.6e-07 20.8 6.2 19 213 21 205 4 208 0.75 # 14914 # 15540 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_3 - 198 Trp_repressor PF01371.14 88 3.1e-05 15.1 0.6 1 2 0.059 1.8 -0.1 0.1 3 33 87 117 85 124 0.83 # 2245 # 2838 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_3 - 198 Trp_repressor PF01371.14 88 3.1e-05 15.1 0.6 2 2 6.4e-06 0.00019 12.6 0.0 39 80 150 191 144 196 0.89 # 2245 # 2838 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_18 - 209 AAA_29 PF13555.1 62 1.1e-07 22.6 0.1 1 1 6.5e-09 2e-07 21.8 0.1 13 40 18 44 12 48 0.84 # 14914 # 15540 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_10 - 127 RepA_N PF06970.6 76 1.2e-35 112.5 1.7 1 1 6.2e-37 1.8e-35 111.8 1.7 1 76 49 125 49 125 0.98 # 9516 # 9896 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.241 3_1 - 245 Methyltransf_25 PF13649.1 101 0.00021 12.9 0.0 1 1 1.5e-05 0.00044 11.9 0.0 1 69 34 96 34 121 0.83 # 220 # 954 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 1_9 - 206 Sdh_cyt PF01127.17 121 0.00059 10.9 15.6 1 2 0.00026 0.0078 7.3 1.9 34 120 12 117 2 118 0.58 # 6994 # 7611 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.272 1_9 - 206 Sdh_cyt PF01127.17 121 0.00059 10.9 15.6 2 2 0.001 0.03 5.4 6.2 33 78 144 189 129 192 0.52 # 6994 # 7611 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.272 1_4 - 223 LZ_Tnp_IS481 PF13011.1 85 1.2e-05 16.9 0.0 1 1 7.2e-07 2.2e-05 16.0 0.0 26 72 34 79 22 95 0.81 # 2810 # 3478 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 3_1 - 245 NodS PF05401.6 201 9e-06 16.4 0.0 1 1 4.8e-07 1.4e-05 15.7 0.0 44 107 31 94 9 115 0.84 # 220 # 954 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 3_1 - 245 TIGR00755 TIGR00755 256 6.9e-48 154.0 1.2 1 1 2.9e-49 8.8e-48 153.6 1.2 6 254 7 237 3 239 0.88 # 220 # 954 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 1_15 - 182 DUF948 PF06103.6 90 0.00013 13.0 0.7 1 1 8.8e-06 0.00026 12.1 0.7 18 80 53 115 48 125 0.85 # 13408 # 13953 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.262 1_4 - 223 HTH_32 PF13565.1 77 5.5e-08 24.8 0.0 1 1 5.6e-09 8.5e-08 24.2 0.0 1 74 49 123 49 126 0.80 # 2810 # 3478 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_3 - 198 HTH_32 PF13565.1 77 2.3e-05 16.4 0.2 1 1 3.3e-06 5e-05 15.3 0.2 19 77 131 181 118 181 0.80 # 2245 # 2838 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_20 - 645 MgtE PF01769.11 135 0.024 6.1 20.1 1 2 0.00085 0.026 6.1 7.0 35 107 195 261 185 270 0.89 # 15867 # 17801 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.253 1_20 - 645 MgtE PF01769.11 135 0.024 6.1 20.1 2 2 0.0022 0.065 4.8 5.2 45 104 539 598 522 630 0.88 # 15867 # 17801 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.253 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/0a8a8c7f-a60e-4fdc-83e8-0cdd33b17cf8 # Target file: checkm_output/bins/pGCA_001986135.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001986135.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/0a8a8c7f-a60e-4fdc-83e8-0cdd33b17cf8 checkm_output/bins/pGCA_001986135.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Staphylococcus/training_20210111 # Date: Mon Jan 11 14:54:24 2021 # [ok]