# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_10 - 257 KR PF08659.5 181 9.8e-07 20.1 0.0 1 1 4.1e-08 1.5e-06 19.5 0.0 12 90 20 95 8 112 0.82 # 7278 # 8048 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.359 2_2 - 231 AAA_19 PF13245.1 76 0.00038 11.7 0.0 1 1 2e-05 0.00074 10.8 0.0 13 36 30 52 24 69 0.82 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 DUF258 PF03193.11 161 3.5e-05 14.5 0.0 1 1 1.6e-06 5.8e-05 13.8 0.0 21 67 12 59 2 76 0.82 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 TIGR01978 TIGR01978 243 7.6e-29 92.0 2.2 1 2 2.3e-12 8.6e-11 32.8 0.1 1 65 2 64 2 79 0.90 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 TIGR01978 TIGR01978 243 7.6e-29 92.0 2.2 2 2 2e-20 7.3e-19 59.3 0.4 136 230 121 213 83 225 0.82 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 1_17 - 138 LAGLIDADG_3 PF14528.1 77 0.00031 12.5 0.6 1 1 4.4e-05 0.0016 10.2 0.6 22 71 52 112 5 117 0.81 # 15737 # 16150 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.297 2_11 - 180 Eno-Rase_FAD_bd PF07055.7 65 0.00027 12.5 3.1 1 2 8.8e-06 0.00033 12.2 0.9 9 50 31 72 26 75 0.90 # 6991 # 7530 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.359 2_11 - 180 Eno-Rase_FAD_bd PF07055.7 65 0.00027 12.5 3.1 2 2 0.09 3.3 -0.7 0.0 39 51 90 102 76 103 0.78 # 6991 # 7530 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.359 2_2 - 231 AAA_18 PF13238.1 129 6.9e-06 17.9 3.6 1 1 4.7e-07 1.7e-05 16.6 3.6 1 69 30 132 30 192 0.60 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 1_14 - 183 MarR_2 PF12802.2 62 3.2e-05 15.1 0.0 1 1 2.4e-06 8.8e-05 13.7 0.0 13 43 153 181 144 182 0.91 # 12603 # 13151 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 1_14 - 183 HTH_Crp_2 PF13545.1 76 5.1e-05 14.6 0.0 1 1 4.2e-06 0.00016 13.0 0.0 28 50 159 181 147 182 0.91 # 12603 # 13151 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 2_2 - 231 Zeta_toxin PF06414.7 201 4e-05 14.3 0.0 1 1 1.7e-06 6.4e-05 13.6 0.0 19 50 30 62 23 82 0.91 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 1_14 - 183 HTH_17 PF12728.2 51 2e-06 19.5 0.7 1 1 1.4e-07 5.1e-06 18.3 0.0 2 23 160 181 160 182 0.92 # 12603 # 13151 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 2_2 - 231 AAA_22 PF13401.1 131 1.2e-05 17.0 4.9 1 1 1.1e-05 0.0004 12.0 4.6 3 123 26 184 23 191 0.62 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_8 - 67 HTH_19 PF12844.2 64 8.4e-15 46.2 0.6 1 1 2.3e-16 8.7e-15 46.1 0.6 2 59 5 62 4 66 0.94 # 4451 # 4651 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.249 2_11 - 180 TIGR00634 TIGR00634 563 0.00014 12.0 3.3 1 1 4.7e-06 0.00017 11.7 3.3 265 340 22 97 3 104 0.81 # 6991 # 7530 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.359 1_14 - 183 Sigma70_r4_2 PF08281.7 54 1.5e-07 22.4 0.1 1 1 1.9e-08 6.9e-07 20.2 0.0 20 47 153 180 147 182 0.89 # 12603 # 13151 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 1_14 - 183 Mga PF05043.8 87 3.8e-06 18.7 0.0 1 1 2.8e-07 1e-05 17.3 0.0 22 52 151 181 145 182 0.94 # 12603 # 13151 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 2_8 - 67 MerR PF00376.18 38 1.9e-05 15.8 0.0 1 1 9.1e-07 3.4e-05 14.9 0.0 3 25 19 41 17 44 0.86 # 4451 # 4651 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.249 2_4 - 96 FtsH_ext PF06480.10 110 0.0014 10.3 3.6 1 2 0.0076 0.28 2.9 0.3 3 36 13 47 10 55 0.62 # 2858 # 3145 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.236 2_4 - 96 FtsH_ext PF06480.10 110 0.0014 10.3 3.6 2 2 0.00013 0.0049 8.6 0.2 1 19 69 87 69 94 0.85 # 2858 # 3145 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.236 1_18 - 880 MMPL PF03176.10 333 7e-107 348.4 0.9 1 2 7.8e-66 2.9e-64 208.3 0.1 3 330 46 359 44 362 0.93 # 16902 # 19541 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.350 1_18 - 880 MMPL PF03176.10 333 7e-107 348.4 0.9 2 2 1.2e-44 4.4e-43 138.6 0.0 2 310 389 695 388 702 0.84 # 16902 # 19541 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.350 2_2 - 231 AAA_23 PF13476.1 202 9.1e-05 14.3 7.4 1 1 5.4e-06 0.0002 13.2 6.8 16 81 23 99 6 194 0.57 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_8 - 67 HTH_31 PF13560.1 64 1e-06 20.4 0.0 1 1 6.4e-08 1.2e-06 20.2 0.0 10 57 11 57 7 60 0.92 # 4451 # 4651 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.249 1_14 - 183 HTH_31 PF13560.1 64 0.0001 14.1 0.0 1 1 1.1e-05 0.0002 13.1 0.0 13 35 150 180 126 182 0.72 # 12603 # 13151 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 1_14 - 183 HTH_22 PF13309.1 64 2.3e-06 18.9 0.1 1 1 3.8e-07 7.1e-06 17.3 0.1 42 64 159 181 139 181 0.78 # 12603 # 13151 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 1_15 - 196 HTH_22 PF13309.1 64 0.00011 13.4 1.2 1 1 2e-05 0.00037 11.8 0.0 46 64 176 194 171 194 0.84 # 13617 # 14204 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.257 1_10 - 257 adh_short PF00106.20 167 8.4e-10 30.3 0.0 1 1 2.8e-11 1e-09 30.0 0.0 10 163 18 175 7 179 0.78 # 7278 # 8048 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.359 1_14 - 183 HTH_37 PF13744.1 80 0.0001 13.6 0.0 1 1 6.1e-06 0.00023 12.5 0.0 22 53 150 181 148 182 0.91 # 12603 # 13151 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 2_1 - 213 Thioredoxin_2 PF13098.1 112 1.5e-10 32.8 4.8 1 1 8.5e-11 3.1e-09 28.6 4.8 3 97 49 197 46 207 0.70 # 1 # 639 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.213 1_23 - 225 HEM4 PF02602.10 231 0.00017 12.3 0.0 1 1 8.1e-06 0.0003 11.5 0.0 124 154 23 53 9 70 0.79 # 23547 # 24221 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_6 - 312 HTH_36 PF13730.1 55 9.4e-08 23.7 0.8 1 1 1.1e-08 2.1e-07 22.6 0.8 2 54 32 95 31 96 0.86 # 3846 # 4781 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.270 1_14 - 183 HTH_36 PF13730.1 55 0.00023 12.8 0.0 1 1 4.2e-05 0.00077 11.2 0.0 29 47 163 181 137 182 0.91 # 12603 # 13151 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 1_8 - 41 DDE_Tnp_1_7 PF13843.1 351 0.00022 11.8 0.0 1 1 6e-06 0.00022 11.8 0.0 103 128 5 30 1 39 0.87 # 6110 # 6232 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 2_2 - 231 AAA_33 PF13671.1 143 0.00031 12.1 0.0 1 1 1.2e-05 0.00043 11.7 0.0 2 19 30 47 29 110 0.82 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 Miro PF08477.8 119 4.4e-06 18.7 0.0 1 1 1.9e-07 7e-06 18.1 0.0 2 113 30 141 29 149 0.76 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_1 - 213 Thioredoxin_3 PF13192.1 76 2.8e-06 18.7 1.0 1 2 0.0011 0.041 5.3 0.0 7 33 60 87 52 101 0.62 # 1 # 639 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.213 2_1 - 213 Thioredoxin_3 PF13192.1 76 2.8e-06 18.7 1.0 2 2 1.6e-05 0.00058 11.2 0.2 30 58 165 194 105 207 0.87 # 1 # 639 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.213 1_17 - 138 Usp PF00582.21 140 1.9e-25 81.2 0.0 1 1 6e-27 2.2e-25 81.0 0.0 1 140 1 137 1 137 0.93 # 15737 # 16150 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.297 1_23 - 225 AAA_17 PF13207.1 121 1.7e-06 20.4 1.2 1 1 1.3e-07 2.4e-06 19.9 1.2 22 114 23 123 15 202 0.85 # 23547 # 24221 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 2_2 - 231 AAA_17 PF13207.1 121 3.3e-06 19.5 1.7 1 1 4.2e-07 7.8e-06 18.3 1.7 1 63 29 115 29 208 0.54 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 1_11 - 561 DDE_Tnp_1_6 PF13751.1 125 1.9e-32 103.5 0.7 1 2 0.027 0.98 1.0 1.5 39 71 217 248 207 281 0.68 # 8334 # 10016 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_11 - 561 DDE_Tnp_1_6 PF13751.1 125 1.9e-32 103.5 0.7 2 2 5.1e-34 1.9e-32 103.5 0.7 1 124 392 518 392 519 0.94 # 8334 # 10016 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 2_1 - 213 DSBA PF01323.15 193 0.0001 13.4 0.4 1 2 7.8e-06 0.00029 11.9 0.2 2 42 55 97 54 131 0.71 # 1 # 639 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.213 2_1 - 213 DSBA PF01323.15 193 0.0001 13.4 0.4 2 2 0.047 1.7 -0.4 0.0 152 175 170 193 96 210 0.61 # 1 # 639 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.213 1_14 - 183 HTH_29 PF13551.1 112 9.9e-07 20.5 2.2 1 2 0.0007 0.026 6.2 0.4 37 69 124 154 117 162 0.75 # 12603 # 13151 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 1_14 - 183 HTH_29 PF13551.1 112 9.9e-07 20.5 2.2 2 2 2.7e-06 0.0001 14.0 0.0 10 34 157 181 153 182 0.83 # 12603 # 13151 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 2_8 - 67 MarR PF01047.17 59 9.6e-05 13.6 0.0 1 1 8.8e-06 0.00016 12.9 0.0 4 34 2 32 1 43 0.90 # 4451 # 4651 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.249 1_14 - 183 MarR PF01047.17 59 0.00019 12.7 0.0 1 1 2.9e-05 0.00054 11.2 0.0 12 39 154 181 151 182 0.91 # 12603 # 13151 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 1_14 - 183 HTH_5 PF01022.15 47 0.00016 12.9 0.0 1 1 1.6e-05 0.0003 12.0 0.0 11 37 154 181 145 182 0.82 # 12603 # 13151 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 1_15 - 196 HTH_5 PF01022.15 47 0.00022 12.4 0.2 1 1 4.3e-05 0.00079 10.7 0.0 15 38 172 195 166 195 0.88 # 13617 # 14204 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.257 1_14 - 183 HTH_24 PF13412.1 48 1.1e-06 19.6 0.1 1 1 1.6e-07 2.9e-06 18.2 0.0 10 39 152 181 151 182 0.93 # 12603 # 13151 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 2_8 - 67 HTH_24 PF13412.1 48 1.7e-05 15.7 0.1 1 1 1.4e-06 2.6e-05 15.1 0.1 9 34 7 32 7 35 0.89 # 4451 # 4651 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.249 2_2 - 231 AAA_21 PF13304.1 303 1.5e-13 42.8 15.3 1 2 4.9e-09 1.8e-07 22.8 2.6 2 42 30 68 29 82 0.71 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 AAA_21 PF13304.1 303 1.5e-13 42.8 15.3 2 2 8.7e-10 3.2e-08 25.3 6.8 165 303 76 192 56 192 0.74 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 1_14 - 183 HTH_AsnC-type PF13404.1 42 0.00011 13.3 0.0 1 1 6.6e-06 0.00024 12.2 0.0 17 36 159 178 151 181 0.85 # 12603 # 13151 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 1_23 - 225 DDE_Tnp_IS240 PF13610.1 140 1.4e-42 136.4 3.2 1 1 5.6e-44 2.1e-42 135.9 3.2 3 139 72 203 70 204 0.95 # 23547 # 24221 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 2_2 - 231 IstB_IS21 PF01695.12 178 0.00014 12.8 1.1 1 2 0.0005 0.019 5.9 0.0 33 63 14 43 6 55 0.79 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 IstB_IS21 PF01695.12 178 0.00014 12.8 1.1 2 2 0.00062 0.023 5.6 0.2 97 149 135 186 106 200 0.83 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 1_14 - 183 HTH_IclR PF09339.5 52 7.5e-08 23.5 0.0 1 1 4.7e-09 1.7e-07 22.3 0.0 17 40 158 181 153 182 0.88 # 12603 # 13151 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 1_14 - 183 HTH_10 PF04967.7 53 4.5e-05 14.6 0.0 1 1 2.5e-06 9.1e-05 13.6 0.0 23 45 159 181 155 182 0.88 # 12603 # 13151 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 1_14 - 183 HTH_7 PF02796.10 45 1.3e-09 29.4 0.0 1 1 2.9e-10 3.6e-09 27.9 0.0 1 44 139 182 139 182 0.83 # 12603 # 13151 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 1_15 - 196 HTH_7 PF02796.10 45 3.7e-08 24.7 0.1 1 1 6.4e-09 7.9e-08 23.7 0.1 1 42 152 193 152 195 0.91 # 13617 # 14204 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.257 1_20 - 190 HTH_7 PF02796.10 45 5e-07 21.1 0.0 1 1 8.7e-08 1.1e-06 20.0 0.0 22 44 29 51 25 52 0.93 # 20858 # 21427 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.316 2_1 - 213 ATP-synt_8 PF00895.15 54 0.043 5.7 12.8 1 1 1.7e-05 0.00061 11.5 4.0 12 47 4 40 3 47 0.76 # 1 # 639 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.213 1_10 - 257 2-Hacid_dh_C PF02826.14 178 0.00031 11.4 0.1 1 2 2.5e-05 0.00094 9.8 0.0 33 78 3 51 1 67 0.79 # 7278 # 8048 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.359 1_10 - 257 2-Hacid_dh_C PF02826.14 178 0.00031 11.4 0.1 2 2 0.061 2.3 -1.2 0.0 27 51 60 84 51 87 0.48 # 7278 # 8048 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.359 1_14 - 183 LacI PF00356.16 46 4.4e-05 14.6 0.0 1 1 2.8e-06 0.0001 13.5 0.0 3 21 163 181 161 182 0.91 # 12603 # 13151 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 2_9 - 286 Rep_3 PF01051.16 222 1.8e-50 163.1 16.9 1 1 6.1e-52 2.3e-50 162.7 16.9 3 222 4 218 2 218 0.94 # 5321 # 6178 # -1 # ID=2_9;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.272 1_14 - 183 Phage_AlpA PF05930.7 51 3e-05 15.3 0.0 1 1 1.4e-06 5.2e-05 14.5 0.0 7 26 163 182 157 182 0.89 # 12603 # 13151 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 2_2 - 231 AAA_14 PF13173.1 128 8e-06 17.3 6.8 1 2 1.5e-05 0.00057 11.3 0.2 4 42 29 65 26 95 0.62 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 AAA_14 PF13173.1 128 8e-06 17.3 6.8 2 2 0.0001 0.0039 8.6 2.1 21 109 94 197 87 200 0.65 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 AAA PF00004.24 132 0.00034 12.3 2.6 1 1 4.6e-05 0.0017 10.1 2.6 2 35 31 66 30 198 0.58 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 AAA_10 PF12846.2 304 1.4e-06 19.4 0.0 1 2 2.3e-05 0.00087 10.2 0.0 4 23 30 49 28 82 0.82 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 AAA_10 PF12846.2 304 1.4e-06 19.4 0.0 2 2 0.00023 0.0085 7.0 0.0 218 267 144 192 120 208 0.88 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 AAA_16 PF13191.1 185 5.3e-05 14.7 0.0 1 1 2.9e-06 0.00011 13.8 0.0 24 53 27 56 16 76 0.84 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 1_4 - 307 Peptidase_S49_N PF08496.5 155 0.00011 13.5 1.0 1 2 3e-06 0.00011 13.5 1.0 70 122 22 72 12 79 0.69 # 2119 # 3039 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.300 1_4 - 307 Peptidase_S49_N PF08496.5 155 0.00011 13.5 1.0 2 2 0.032 1.2 0.4 0.2 38 65 157 184 125 217 0.71 # 2119 # 3039 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.300 1_14 - 183 HTH_23 PF13384.1 50 2.3e-09 28.2 0.0 1 1 7.4e-10 5.5e-09 27.1 0.0 6 39 147 181 143 182 0.91 # 12603 # 13151 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 1_23 - 225 HTH_23 PF13384.1 50 1.1e-05 16.6 2.8 1 1 1e-05 7.6e-05 13.9 0.1 28 41 41 54 40 57 0.92 # 23547 # 24221 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 2_8 - 67 HTH_23 PF13384.1 50 1.9e-05 15.8 0.0 1 1 5.9e-06 4.3e-05 14.7 0.0 16 34 14 32 2 37 0.88 # 4451 # 4651 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.249 1_20 - 190 HTH_23 PF13384.1 50 7.8e-05 13.9 0.0 1 1 2.6e-05 0.00019 12.6 0.0 16 38 27 50 7 55 0.79 # 20858 # 21427 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.316 1_15 - 196 HTH_23 PF13384.1 50 0.00027 12.2 0.0 1 1 7.1e-05 0.00052 11.2 0.0 10 38 164 193 154 195 0.83 # 13617 # 14204 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.257 1_17 - 138 SAM_MT PF04445.8 235 5.8e-06 17.1 0.1 1 1 1.9e-07 7e-06 16.8 0.1 9 110 34 135 29 137 0.83 # 15737 # 16150 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.297 1_18 - 880 TIGR01129 TIGR01129 397 0.00042 10.7 40.4 1 2 1.1e-05 0.0002 11.7 20.4 249 392 174 322 157 327 0.72 # 16902 # 19541 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.350 1_18 - 880 TIGR01129 TIGR01129 397 0.00042 10.7 40.4 2 2 0.0019 0.036 4.3 12.0 256 389 543 675 515 681 0.71 # 16902 # 19541 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.350 1_5 - 145 TIGR01129 TIGR01129 397 0.012 5.8 9.5 1 2 4.8e-05 0.00089 9.6 1.2 258 299 42 85 32 92 0.80 # 3061 # 3495 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.313 1_5 - 145 TIGR01129 TIGR01129 397 0.012 5.8 9.5 2 2 0.014 0.25 1.5 1.7 231 276 90 135 81 140 0.67 # 3061 # 3495 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.313 1_8 - 41 Hydrolase_3 PF08282.7 254 3.1e-08 24.9 0.0 1 1 9.2e-10 3.4e-08 24.8 0.0 182 211 2 31 1 32 0.92 # 6110 # 6232 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 2_2 - 231 PduV-EutP PF10662.4 143 0.00012 13.1 0.1 1 1 6.6e-06 0.00024 12.1 0.1 4 24 30 50 28 68 0.87 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 1_15 - 196 UPF0122 PF04297.9 101 1.2e-05 16.8 2.2 1 2 0.039 1.5 0.5 0.1 55 82 31 60 20 71 0.49 # 13617 # 14204 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.257 1_15 - 196 UPF0122 PF04297.9 101 1.2e-05 16.8 2.2 2 2 1e-06 3.7e-05 15.3 0.2 24 55 163 194 158 195 0.90 # 13617 # 14204 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.257 1_7 - 257 TIGR02168 TIGR02168 1181 1.7e-05 13.8 34.1 1 1 5.6e-07 2.1e-05 13.5 34.1 254 446 50 239 23 248 0.73 # 5223 # 5993 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.278 1_14 - 183 HTH_11 PF08279.7 55 7.8e-11 33.1 0.0 1 1 7.7e-11 7.2e-10 30.0 0.0 5 37 150 181 146 182 0.88 # 12603 # 13151 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 1_15 - 196 HTH_11 PF08279.7 55 4.2e-07 21.1 0.5 1 1 8.8e-08 8.1e-07 20.2 0.1 2 37 161 194 160 195 0.87 # 13617 # 14204 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.257 2_8 - 67 HTH_11 PF08279.7 55 3.9e-06 18.0 0.1 1 1 8.3e-07 7.7e-06 17.1 0.1 9 33 10 33 2 34 0.80 # 4451 # 4651 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.249 1_2 - 135 HTH_11 PF08279.7 55 0.00019 12.6 0.0 1 1 4.3e-05 0.0004 11.6 0.0 22 43 2 23 1 31 0.88 # 1357 # 1761 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.311 2_2 - 231 UPF0079 PF02367.12 123 0.00014 13.0 0.1 1 1 8.7e-06 0.00032 11.9 0.1 12 39 24 51 14 61 0.81 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 NACHT PF05729.7 166 0.00029 12.0 1.1 1 1 1.3e-05 0.0005 11.3 0.5 2 20 29 47 28 56 0.85 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 1_10 - 257 adh_short_C2 PF13561.1 241 5.2e-79 256.9 0.0 1 1 1.6e-80 5.8e-79 256.7 0.0 1 241 13 253 13 253 0.98 # 7278 # 8048 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.359 1_23 - 225 Arg_repressor PF01316.16 70 0.00011 13.3 0.0 1 1 9.7e-06 0.00036 11.6 0.0 24 48 30 54 25 73 0.81 # 23547 # 24221 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_14 - 183 SpoIIID PF12116.3 82 0.00025 12.5 0.5 1 1 1.2e-05 0.00044 11.7 0.0 17 38 157 178 147 182 0.86 # 12603 # 13151 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 1_14 - 183 HTH_28 PF13518.1 52 7.6e-08 23.8 0.5 1 1 2.6e-08 3.2e-07 21.8 0.1 2 34 148 181 147 182 0.87 # 12603 # 13151 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 2_8 - 67 HTH_28 PF13518.1 52 3.1e-05 15.5 0.0 1 1 3.9e-06 4.9e-05 14.9 0.0 11 31 14 34 9 38 0.83 # 4451 # 4651 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.249 1_23 - 225 HTH_28 PF13518.1 52 5.5e-05 14.7 1.3 1 1 1.2e-05 0.00015 13.3 0.5 15 36 31 54 17 55 0.80 # 23547 # 24221 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 2_8 - 67 HTH_Tnp_1_2 PF13022.1 142 8.2e-06 17.2 0.0 1 1 2.2e-07 8.2e-06 17.2 0.0 23 53 3 34 1 60 0.81 # 4451 # 4651 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.249 1_23 - 225 HTH_Tnp_4 PF13613.1 53 6.6e-05 14.0 0.4 1 1 6.6e-06 0.00025 12.2 0.4 30 49 41 60 17 63 0.83 # 23547 # 24221 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 2_2 - 231 NTPase_1 PF03266.10 168 0.00082 10.6 3.4 1 2 0.00011 0.0043 8.3 0.1 2 24 30 52 29 75 0.79 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 NTPase_1 PF03266.10 168 0.00082 10.6 3.4 2 2 0.004 0.15 3.3 0.4 88 150 139 198 117 220 0.67 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 1_14 - 183 GntR PF00392.16 64 0.00016 12.7 0.0 1 1 1.2e-05 0.00044 11.3 0.0 21 43 157 178 154 182 0.88 # 12603 # 13151 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 2_4 - 96 Virul_fac_BrkB PF03631.10 260 2.8e-05 15.0 1.2 1 1 1e-06 3.8e-05 14.6 1.2 114 189 12 92 2 94 0.58 # 2858 # 3145 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.236 1_14 - 183 HTH_Tnp_ISL3 PF13542.1 52 0.00021 12.0 0.0 1 1 1.2e-05 0.00045 11.0 0.0 31 50 163 182 158 182 0.87 # 12603 # 13151 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 2_1 - 213 Thioredoxin PF00085.15 104 4.1e-06 18.0 3.8 1 2 6.4e-06 0.00024 12.3 0.2 8 60 41 94 35 142 0.80 # 1 # 639 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.213 2_1 - 213 Thioredoxin PF00085.15 104 4.1e-06 18.0 3.8 2 2 0.00033 0.012 6.9 0.4 41 89 154 200 149 213 0.75 # 1 # 639 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.213 2_2 - 231 DUF87 PF01935.12 229 0.00011 13.5 4.2 1 1 1.6e-05 0.00061 11.1 4.2 26 81 30 109 28 194 0.78 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 1_6 - 312 YTH PF04146.10 140 5.1e-05 14.4 0.2 1 1 3.3e-06 0.00012 13.2 0.1 35 105 54 133 45 162 0.67 # 3846 # 4781 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.270 2_1 - 213 Thioredoxin_7 PF13899.1 82 6.2e-07 21.0 0.1 1 1 3.8e-08 1.4e-06 19.8 0.1 14 60 48 92 36 119 0.80 # 1 # 639 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.213 1_13 - 189 TetR_N PF00440.18 47 8.7e-19 58.5 0.1 1 1 1.5e-19 1.4e-18 57.9 0.1 1 47 7 53 7 53 0.98 # 11786 # 12352 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.242 1_20 - 190 TetR_N PF00440.18 47 2.2e-09 28.4 0.5 1 1 4.1e-10 3.8e-09 27.7 0.0 14 44 26 56 16 59 0.90 # 20858 # 21427 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.316 1_14 - 183 TetR_N PF00440.18 47 5.4e-06 17.6 0.0 1 1 5.3e-06 4.9e-05 14.5 0.0 16 35 159 178 156 179 0.90 # 12603 # 13151 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 1_15 - 196 TetR_N PF00440.18 47 0.00023 12.4 0.0 1 1 5e-05 0.00047 11.4 0.0 18 36 174 192 171 192 0.94 # 13617 # 14204 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.257 1_23 - 225 rve PF00665.21 120 3.7e-17 54.1 1.0 1 2 0.039 1.5 0.5 0.0 83 102 30 49 9 52 0.88 # 23547 # 24221 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_23 - 225 rve PF00665.21 120 3.7e-17 54.1 1.0 2 2 5.6e-18 2.1e-16 51.7 0.5 2 117 66 174 65 176 0.92 # 23547 # 24221 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 2_8 - 67 HTH_25 PF13413.1 62 1.8e-05 15.9 0.0 1 1 7.8e-07 2.9e-05 15.2 0.0 2 35 7 40 6 43 0.93 # 4451 # 4651 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.249 2_2 - 231 MobB PF03205.9 140 0.00014 13.1 0.1 1 1 6.7e-06 0.00025 12.3 0.1 3 22 30 48 28 70 0.75 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 1_14 - 183 HTH_38 PF13936.1 44 1.1e-08 26.1 0.0 1 1 7.3e-10 2.7e-08 24.8 0.0 11 42 149 181 142 182 0.89 # 12603 # 13151 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 1_14 - 183 Sigma70_r4 PF04545.11 50 3.4e-06 17.9 0.1 1 1 9.3e-07 1.1e-05 16.2 0.0 13 38 151 177 142 182 0.77 # 12603 # 13151 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 2_8 - 67 Sigma70_r4 PF04545.11 50 1.3e-05 16.0 0.3 1 1 1.5e-06 1.9e-05 15.5 0.3 16 42 11 37 7 38 0.89 # 4451 # 4651 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.249 1_15 - 196 Sigma70_r4 PF04545.11 50 5.5e-05 14.0 0.0 1 1 1.2e-05 0.00014 12.7 0.0 10 36 162 188 158 191 0.92 # 13617 # 14204 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.257 1_11 - 561 DDE_Tnp_1 PF01609.16 213 3.8e-38 122.6 0.1 1 2 0.08 2.9 -1.2 0.7 102 124 226 248 217 267 0.61 # 8334 # 10016 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_11 - 561 DDE_Tnp_1 PF01609.16 213 3.8e-38 122.6 0.1 2 2 1e-39 3.8e-38 122.6 0.1 7 213 267 515 261 515 0.95 # 8334 # 10016 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 2_1 - 213 Thioredoxin_4 PF13462.1 163 1.2e-12 39.7 3.7 1 1 4.9e-14 1.8e-12 39.0 3.7 13 150 51 198 48 210 0.69 # 1 # 639 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.213 2_8 - 67 HTH_3 PF01381.17 55 1.5e-16 51.6 0.8 1 1 8.6e-18 1.6e-16 51.5 0.8 2 53 8 59 7 61 0.94 # 4451 # 4651 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.249 1_14 - 183 HTH_3 PF01381.17 55 1e-06 20.1 0.0 1 1 1.1e-07 2e-06 19.2 0.0 4 31 154 181 151 182 0.87 # 12603 # 13151 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 1_23 - 225 DDE_3 PF13358.1 146 5.1e-06 17.8 0.4 1 1 2.7e-07 1e-05 16.9 0.4 26 95 74 143 51 197 0.77 # 23547 # 24221 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_23 - 225 DDE_Tnp_IS66 PF03050.9 271 1.6e-07 22.2 4.4 1 2 8.8e-09 3.3e-07 21.2 1.5 11 97 16 96 7 134 0.75 # 23547 # 24221 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_23 - 225 DDE_Tnp_IS66 PF03050.9 271 1.6e-07 22.2 4.4 2 2 0.0087 0.32 1.6 0.1 243 263 163 183 156 189 0.81 # 23547 # 24221 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_14 - 183 TrmB PF01978.14 68 5.3e-07 20.9 0.0 1 1 5.3e-08 9.8e-07 20.0 0.0 20 44 157 181 151 182 0.89 # 12603 # 13151 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 1_15 - 196 TrmB PF01978.14 68 0.00013 13.2 0.1 1 1 1.5e-05 0.00028 12.1 0.1 21 44 171 194 166 195 0.89 # 13617 # 14204 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.257 2_8 - 67 HTH_26 PF13443.1 63 1.1e-06 20.4 0.1 1 1 6.2e-08 1.1e-06 20.3 0.1 5 58 10 62 6 66 0.91 # 4451 # 4651 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.249 1_14 - 183 HTH_26 PF13443.1 63 7e-06 17.8 0.0 1 1 1.1e-06 2.1e-05 16.2 0.0 7 32 156 181 150 182 0.86 # 12603 # 13151 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 2_9 - 286 TrfA PF07042.6 282 2.7e-05 14.6 0.1 1 1 1e-06 3.8e-05 14.1 0.1 51 189 21 163 10 177 0.85 # 5321 # 6178 # -1 # ID=2_9;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.272 1_14 - 183 DUF134 PF02001.11 106 9.3e-05 13.9 0.0 1 1 5.3e-06 0.0002 12.8 0.0 52 79 154 181 145 182 0.89 # 12603 # 13151 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 2_1 - 213 Thioredoxin_8 PF13905.1 95 0.00028 12.6 10.4 1 2 2e-05 0.00074 11.2 0.6 2 44 52 93 50 119 0.78 # 1 # 639 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.213 2_1 - 213 Thioredoxin_8 PF13905.1 95 0.00028 12.6 10.4 2 2 0.0043 0.16 3.7 5.1 16 88 117 191 104 196 0.78 # 1 # 639 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.213 2_2 - 231 ABC_tran PF00005.22 137 3.4e-24 77.2 0.0 1 1 1.3e-25 4.9e-24 76.7 0.0 1 136 17 156 17 157 0.91 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 SMC_N PF02463.14 220 0.00027 11.7 2.1 1 2 1.4e-05 0.00051 10.8 0.1 26 44 29 47 7 57 0.80 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 SMC_N PF02463.14 220 0.00027 11.7 2.1 2 2 0.02 0.72 0.5 0.2 161 205 149 194 98 207 0.77 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 AAA_29 PF13555.1 62 6.9e-06 17.1 0.0 1 1 3.4e-07 1.3e-05 16.3 0.0 19 40 24 44 15 48 0.81 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 AAA_28 PF13521.1 163 2.7e-05 15.7 0.1 1 1 1.2e-06 4.4e-05 15.0 0.1 2 20 30 48 29 72 0.77 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 1_6 - 312 RepA_N PF06970.6 76 2.2e-35 111.9 6.6 1 1 2.3e-36 8.6e-35 110.0 6.6 1 76 15 90 15 90 0.99 # 3846 # 4781 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.270 2_2 - 231 AAA_5 PF07728.9 139 0.00026 12.2 0.1 1 2 4.3e-05 0.0016 9.7 0.0 4 34 32 62 30 81 0.81 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 AAA_5 PF07728.9 139 0.00026 12.2 0.1 2 2 0.036 1.3 0.2 0.0 79 94 135 150 95 221 0.67 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 1_14 - 183 HTH_32 PF13565.1 77 1.3e-09 30.3 0.6 1 1 6e-10 7.4e-09 27.9 0.2 12 77 126 180 118 180 0.76 # 12603 # 13151 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.373 1_23 - 225 HTH_32 PF13565.1 77 5.5e-08 25.1 0.5 1 2 7.8e-07 9.6e-06 17.9 0.1 48 76 25 50 8 51 0.84 # 23547 # 24221 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_23 - 225 HTH_32 PF13565.1 77 5.5e-08 25.1 0.5 2 2 0.0069 0.085 5.3 0.0 29 63 136 171 102 185 0.75 # 23547 # 24221 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_15 - 196 HTH_32 PF13565.1 77 0.00017 14.0 0.1 1 1 2.5e-05 0.0003 13.1 0.1 19 77 143 193 132 193 0.75 # 13617 # 14204 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.257 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/bc43d04c-6e3a-4354-91a1-b52955a3a7c7 # Target file: checkm_output/bins/pGCA_001956655.2.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001956655.2.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/bc43d04c-6e3a-4354-91a1-b52955a3a7c7 checkm_output/bins/pGCA_001956655.2.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Staphylococcus/training_20210111 # Date: Mon Jan 11 14:54:19 2021 # [ok]