# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_14 - 188 HTH_17 PF12728.2 51 0.00016 12.9 0.0 1 1 2.5e-05 0.00031 12.0 0.0 3 24 3 24 3 42 0.92 # 8858 # 9421 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.215 1_3 - 99 HTH_17 PF12728.2 51 0.00049 11.4 4.9 1 1 0.00017 0.0021 9.3 5.0 12 41 41 78 26 95 0.82 # 1682 # 1978 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.333 1_21 - 228 HTH_19 PF12844.2 64 1.5e-05 16.0 0.0 1 4 0.04 1 0.5 0.0 42 57 12 27 10 32 0.83 # 14503 # 15186 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.306 1_21 - 228 HTH_19 PF12844.2 64 1.5e-05 16.0 0.0 2 4 0.0028 0.071 4.2 0.0 42 60 64 82 51 86 0.88 # 14503 # 15186 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.306 1_21 - 228 HTH_19 PF12844.2 64 1.5e-05 16.0 0.0 3 4 0.0034 0.085 4.0 0.0 42 60 118 136 103 140 0.80 # 14503 # 15186 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.306 1_21 - 228 HTH_19 PF12844.2 64 1.5e-05 16.0 0.0 4 4 0.023 0.58 1.3 0.0 43 60 173 190 164 194 0.84 # 14503 # 15186 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.306 1_21 - 228 Elong-fact-P_C PF09285.6 56 1.9e-05 15.0 0.1 1 3 0.025 0.63 0.5 0.0 35 53 37 58 33 60 0.69 # 14503 # 15186 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.306 1_21 - 228 Elong-fact-P_C PF09285.6 56 1.9e-05 15.0 0.1 2 3 0.00093 0.023 5.1 0.0 35 51 89 105 80 107 0.85 # 14503 # 15186 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.306 1_21 - 228 Elong-fact-P_C PF09285.6 56 1.9e-05 15.0 0.1 3 3 0.0015 0.038 4.4 0.0 33 47 141 155 134 160 0.84 # 14503 # 15186 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.306 1_3 - 99 HEM4 PF02602.10 231 3.4e-05 14.1 0.0 1 1 1.5e-06 3.9e-05 13.9 0.0 123 155 22 54 8 71 0.78 # 1682 # 1978 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.333 1_3 - 99 DDE_Tnp_IS240 PF13610.1 140 1.2e-14 45.4 1.7 1 1 8.6e-16 2.1e-14 44.6 1.7 3 28 72 97 70 98 0.95 # 1682 # 1978 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.333 1_13 - 285 Rep_3 PF01051.16 222 2.6e-46 148.9 17.8 1 1 1.5e-47 3.8e-46 148.3 17.8 3 222 4 220 2 220 0.89 # 7880 # 8734 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.251 1_3 - 99 HTH_23 PF13384.1 50 4.9e-06 17.2 3.1 1 2 0.036 0.45 1.4 0.0 18 27 26 35 17 36 0.80 # 1682 # 1978 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.333 1_3 - 99 HTH_23 PF13384.1 50 4.9e-06 17.2 3.1 2 2 1.9e-06 2.4e-05 15.0 0.9 28 41 41 54 40 70 0.93 # 1682 # 1978 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.333 1_14 - 188 HTH_23 PF13384.1 50 9.7e-05 13.0 0.0 1 1 1.4e-05 0.00018 12.2 0.0 21 43 5 27 2 31 0.88 # 8858 # 9421 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.215 1_14 - 188 Kinesin-relat_1 PF12711.2 86 0.0069 7.8 16.4 1 1 7.9e-06 0.0002 12.8 6.9 2 67 96 163 95 170 0.83 # 8858 # 9421 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.215 1_14 - 188 Glyco_transf_41 PF13844.1 468 9.2e-05 11.4 0.1 1 2 3.7e-06 9.2e-05 11.4 0.1 295 353 11 68 4 80 0.90 # 8858 # 9421 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.215 1_14 - 188 Glyco_transf_41 PF13844.1 468 9.2e-05 11.4 0.1 2 2 0.0058 0.15 0.8 0.9 162 218 110 168 88 177 0.68 # 8858 # 9421 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.215 1_3 - 99 Arg_repressor PF01316.16 70 3.2e-05 14.4 0.0 1 1 1.9e-06 4.8e-05 13.9 0.0 24 48 30 54 25 76 0.79 # 1682 # 1978 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.333 1_21 - 228 HTH_28 PF13518.1 52 7.3e-07 20.2 0.0 1 4 0.0057 0.048 4.8 0.0 10 31 9 30 6 33 0.85 # 14503 # 15186 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.306 1_21 - 228 HTH_28 PF13518.1 52 7.3e-07 20.2 0.0 2 4 0.013 0.11 3.7 0.0 12 31 63 82 57 86 0.81 # 14503 # 15186 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.306 1_21 - 228 HTH_28 PF13518.1 52 7.3e-07 20.2 0.0 3 4 0.012 0.1 3.7 0.0 12 32 117 137 114 142 0.87 # 14503 # 15186 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.306 1_21 - 228 HTH_28 PF13518.1 52 7.3e-07 20.2 0.0 4 4 0.029 0.25 2.5 0.0 13 32 172 191 166 196 0.83 # 14503 # 15186 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.306 1_14 - 188 HTH_28 PF13518.1 52 3.9e-06 17.8 0.0 1 1 9.2e-07 7.7e-06 16.9 0.0 14 39 3 28 1 38 0.89 # 8858 # 9421 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.215 1_3 - 99 HTH_28 PF13518.1 52 2.8e-05 15.1 0.5 1 1 3.4e-06 2.8e-05 15.1 0.5 15 36 31 54 17 55 0.80 # 1682 # 1978 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.333 1_3 - 99 HTH_Tnp_4 PF13613.1 53 9.3e-06 16.2 0.5 1 1 1.8e-06 4.5e-05 14.0 0.5 30 49 41 60 17 63 0.82 # 1682 # 1978 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.333 1_14 - 188 MerR_1 PF13411.1 69 1.1e-05 16.2 0.6 1 1 4.3e-07 1.1e-05 16.2 0.6 2 52 3 54 2 63 0.85 # 8858 # 9421 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.215 1_11 - 83 Virul_fac_BrkB PF03631.10 260 0.00044 10.6 5.7 1 1 2.1e-05 0.00054 10.3 5.7 119 180 5 68 2 78 0.65 # 6802 # 7050 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=5bp;gc_cont=0.369 1_7 - 121 DUF87 PF01935.12 229 3.7e-05 14.5 1.7 1 1 1.5e-06 3.8e-05 14.5 1.7 81 173 3 113 1 120 0.76 # 4380 # 4742 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=13bp;gc_cont=0.342 1_23 - 113 Biotin_lipoyl_2 PF13533.1 50 0.00012 12.7 0.0 1 1 1.3e-05 0.00033 11.3 0.0 15 31 55 71 52 72 0.90 # 16150 # 16488 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=4bp;gc_cont=0.383 1_3 - 99 rve PF00665.21 120 9.3e-07 20.0 0.1 1 2 0.0097 0.24 2.5 0.0 83 102 30 49 6 52 0.87 # 1682 # 1978 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.333 1_3 - 99 rve PF00665.21 120 9.3e-07 20.0 0.1 2 2 7.3e-07 1.8e-05 15.8 0.0 2 33 66 95 65 98 0.88 # 1682 # 1978 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.333 1_3 - 99 HTH_Tnp_1 PF01527.15 76 0.00053 11.0 2.0 1 1 6.6e-05 0.0016 9.4 2.0 24 47 29 54 5 76 0.77 # 1682 # 1978 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.333 1_21 - 228 Rep-A_N PF04057.7 101 1.2e-06 19.3 4.7 1 2 3.8e-05 0.00094 10.0 0.5 16 78 90 150 75 155 0.78 # 14503 # 15186 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.306 1_21 - 228 Rep-A_N PF04057.7 101 1.2e-06 19.3 4.7 2 2 1.3e-05 0.00033 11.4 0.6 30 78 156 204 147 227 0.77 # 14503 # 15186 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.306 1_6 - 197 Lactamase_B PF00753.22 194 1.2e-05 16.0 0.0 1 1 5.2e-07 1.3e-05 15.9 0.0 4 84 19 101 16 158 0.82 # 3479 # 4069 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=TATAA;rbs_spacer=11bp;gc_cont=0.277 1_3 - 99 DDE_Tnp_IS66 PF03050.9 271 4.7e-08 23.4 0.3 1 1 2.1e-09 5.3e-08 23.3 0.3 15 93 20 92 7 96 0.77 # 1682 # 1978 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.333 1_23 - 113 Peptidase_M23 PF01551.17 96 6e-29 91.0 0.7 1 1 2.6e-30 6.6e-29 90.9 0.7 2 88 1 89 1 101 0.92 # 16150 # 16488 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=4bp;gc_cont=0.383 1_19 - 150 Sdh_cyt PF01127.17 121 1.2e-05 16.2 1.0 1 2 0.00059 0.015 6.1 0.2 20 47 37 63 20 78 0.72 # 12572 # 13021 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=8bp;gc_cont=0.307 1_19 - 150 Sdh_cyt PF01127.17 121 1.2e-05 16.2 1.0 2 2 7.6e-05 0.0019 9.0 0.0 18 62 103 147 82 149 0.64 # 12572 # 13021 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=8bp;gc_cont=0.307 1_3 - 99 HTH_32 PF13565.1 77 1e-06 20.5 0.1 1 1 7e-08 1.8e-06 19.7 0.1 48 76 25 50 8 51 0.86 # 1682 # 1978 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.333 1_14 - 188 PhoU PF01895.14 88 0.0043 8.5 6.3 1 1 6.7e-05 0.0017 9.8 3.2 14 54 76 117 67 145 0.73 # 8858 # 9421 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.215 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/d089ec25-b027-4079-b7e7-8eb196063e27 # Target file: checkm_output/bins/pGCA_001663395.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001663395.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/d089ec25-b027-4079-b7e7-8eb196063e27 checkm_output/bins/pGCA_001663395.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Staphylococcus/training_20210111 # Date: Mon Jan 11 14:54:07 2021 # [ok]