# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_17 - 156 DUF204 PF02659.10 67 1e-05 17.5 0.6 1 1 4.1e-07 2e-05 16.6 0.6 5 52 4 53 3 59 0.77 # 10926 # 11393 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.361 1_15 - 671 DUF258 PF03193.11 161 2.5e-05 15.3 1.3 1 2 0.028 1.3 0.0 0.1 70 119 205 254 194 259 0.81 # 7604 # 9616 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 1_15 - 671 DUF258 PF03193.11 161 2.5e-05 15.3 1.3 2 2 1.7e-06 8.4e-05 13.7 0.6 32 57 255 279 232 357 0.72 # 7604 # 9616 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 3_7 - 575 Peptidase_MA_2 PF13485.1 128 0.00018 13.5 0.0 1 1 8e-06 0.00038 12.4 0.0 2 40 193 230 192 276 0.84 # 5285 # 7009 # 1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.268 1_15 - 671 AAA_18 PF13238.1 129 0.0039 9.4 5.6 1 2 8.3e-05 0.004 9.4 1.3 2 89 261 396 261 404 0.54 # 7604 # 9616 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 1_15 - 671 AAA_18 PF13238.1 129 0.0039 9.4 5.6 2 2 0.052 2.5 0.3 0.0 43 89 402 451 383 468 0.61 # 7604 # 9616 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 2_1 - 167 Methyltransf_11 PF08241.7 95 7.3e-05 15.2 0.0 1 1 2.8e-06 0.00013 14.3 0.0 55 95 18 60 3 60 0.83 # 192 # 692 # 1 # ID=2_1;partial=00;start_type=TTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.230 2_2 - 1025 tRNA-synt_1 PF00133.17 601 1.3e-242 797.9 4.6 1 1 4.6e-244 2.2e-242 797.1 4.6 2 601 12 625 11 625 0.99 # 719 # 3793 # 1 # ID=2_2;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_24 - 128 tRNA_anti-codon PF01336.20 75 1.4e-05 16.8 0.1 1 1 4.2e-07 2e-05 16.3 0.1 23 65 39 81 16 99 0.86 # 17747 # 18130 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 3_3 - 186 HTH_17 PF12728.2 51 1.2e-05 17.5 1.0 1 1 9.4e-07 4.5e-05 15.6 0.0 2 24 160 182 159 184 0.92 # 1713 # 2270 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.310 1_15 - 671 AAA_22 PF13401.1 131 5.4e-05 15.2 0.0 1 2 1.8e-05 0.00085 11.4 0.0 7 32 260 285 254 398 0.82 # 7604 # 9616 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 1_15 - 671 AAA_22 PF13401.1 131 5.4e-05 15.2 0.0 2 2 0.065 3.1 -0.2 0.0 81 101 493 516 470 554 0.76 # 7604 # 9616 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 1_8 - 87 HTH_19 PF12844.2 64 1.2e-10 33.2 0.0 1 1 3.2e-12 1.5e-10 32.9 0.0 4 55 17 69 16 78 0.91 # 3049 # 3309 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 2_2 - 1025 tRNA-synt_1e PF01406.14 301 8.9e-08 23.4 0.0 1 2 0.019 0.92 0.3 0.0 9 48 34 73 27 75 0.83 # 719 # 3793 # 1 # ID=2_2;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 2_2 - 1025 tRNA-synt_1e PF01406.14 301 8.9e-08 23.4 0.0 2 2 2.7e-08 1.3e-06 19.5 0.0 242 299 573 632 556 634 0.75 # 719 # 3793 # 1 # ID=2_2;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_15 - 671 FtsK_SpoIIIE PF01580.13 205 9.8e-05 13.7 0.0 1 1 4.1e-06 0.0002 12.7 0.0 35 78 249 293 229 300 0.79 # 7604 # 9616 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 3_3 - 186 Sigma70_r4_2 PF08281.7 54 0.0001 13.6 0.1 1 1 6.7e-06 0.00032 12.1 0.0 21 45 154 178 153 184 0.88 # 1713 # 2270 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.310 3_3 - 186 Mga PF05043.8 87 7.7e-06 18.1 0.1 1 1 4.6e-07 2.2e-05 16.6 0.0 21 56 150 185 111 185 0.90 # 1713 # 2270 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.310 1_20 - 701 TIGR00615 TIGR00615 196 1.1e-06 19.8 0.1 1 1 5.8e-08 2.8e-06 18.5 0.1 123 171 89 138 80 156 0.86 # 12510 # 14612 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.277 1_24 - 128 tRNA_anti_2 PF13742.1 99 0.00028 12.6 0.0 1 1 7.6e-06 0.00036 12.3 0.0 39 87 25 79 9 88 0.78 # 17747 # 18130 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 1_8 - 87 HTH_31 PF13560.1 64 1e-09 30.4 0.0 1 1 2.5e-11 1.2e-09 30.2 0.0 7 57 18 68 15 82 0.91 # 3049 # 3309 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 3_3 - 186 HTH_22 PF13309.1 64 2.8e-06 19.0 0.4 1 1 4.2e-07 2e-05 16.2 0.4 23 64 144 181 122 181 0.77 # 1713 # 2270 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.310 1_22 - 549 T4SS-DNA_transf PF02534.9 469 3.8e-148 485.7 3.0 1 1 8e-150 3.8e-148 485.7 3.0 3 468 3 462 1 463 0.97 # 15089 # 16735 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.305 1_20 - 701 Toprim_Crpt PF13342.1 62 4e-18 56.8 5.4 1 3 0.0066 0.32 2.6 0.5 31 58 216 242 211 250 0.70 # 12510 # 14612 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.277 1_20 - 701 Toprim_Crpt PF13342.1 62 4e-18 56.8 5.4 2 3 0.0044 0.21 3.2 0.4 11 37 428 456 423 460 0.84 # 12510 # 14612 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.277 1_20 - 701 Toprim_Crpt PF13342.1 62 4e-18 56.8 5.4 3 3 8.3e-20 4e-18 56.8 5.4 1 61 639 700 639 700 0.98 # 12510 # 14612 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.277 1_24 - 128 SSB PF00436.20 104 2.1e-25 80.5 0.1 1 1 5.5e-27 2.6e-25 80.2 0.1 1 87 2 82 2 94 0.93 # 17747 # 18130 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 5_1 - 225 MULE PF10551.4 93 0.0001 14.4 0.0 1 1 4.7e-06 0.00023 13.3 0.0 19 77 92 147 63 161 0.84 # 57 # 731 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.345 5_1 - 225 HEM4 PF02602.10 231 0.00023 12.3 0.0 1 1 8e-06 0.00039 11.6 0.0 125 154 24 53 9 70 0.79 # 57 # 731 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.345 2_2 - 1025 tRNA-synt_1_2 PF13603.1 185 6.5e-05 14.1 0.0 1 1 4.4e-06 0.00021 12.5 0.0 103 144 297 338 199 368 0.71 # 719 # 3793 # 1 # ID=2_2;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_9 - 327 HTH_36 PF13730.1 55 1.1e-06 20.6 0.5 1 1 1.7e-07 4.2e-06 18.8 0.5 2 55 28 78 27 78 0.88 # 3691 # 4671 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.259 3_3 - 186 HTH_36 PF13730.1 55 5.6e-05 15.2 0.0 1 1 6.5e-06 0.00016 13.7 0.0 28 50 162 184 99 185 0.81 # 1713 # 2270 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.310 2_2 - 1025 PhnA_Zn_Ribbon PF08274.7 30 0.00019 13.1 2.6 1 2 0.00027 0.013 7.2 0.4 19 29 451 461 450 462 0.90 # 719 # 3793 # 1 # ID=2_2;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 2_2 - 1025 PhnA_Zn_Ribbon PF08274.7 30 0.00019 13.1 2.6 2 2 0.0012 0.06 5.1 0.1 13 26 486 499 484 500 0.88 # 719 # 3793 # 1 # ID=2_2;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_17 - 156 T2SF PF00482.18 124 0.00065 11.5 5.0 1 1 2.7e-05 0.0013 10.6 4.8 92 123 12 43 10 44 0.93 # 10926 # 11393 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.361 1_6 - 70 StbA PF06406.6 318 3.5e-05 14.7 0.0 1 1 8.2e-07 3.9e-05 14.5 0.0 266 314 7 52 2 56 0.88 # 2504 # 2713 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.300 5_1 - 225 AAA_17 PF13207.1 121 2.1e-06 20.5 1.0 1 1 1.3e-07 3.1e-06 19.9 1.0 23 113 24 122 21 204 0.85 # 57 # 731 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.345 1_15 - 671 AAA_17 PF13207.1 121 0.0015 11.3 2.5 1 1 0.00023 0.0055 9.4 0.1 4 15 262 273 260 277 0.93 # 7604 # 9616 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 2_2 - 1025 tRNA-synt_1g PF09334.6 391 1.1e-25 81.9 7.9 1 4 3.1e-12 1.5e-10 32.1 0.2 10 135 44 188 41 199 0.75 # 719 # 3793 # 1 # ID=2_2;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 2_2 - 1025 tRNA-synt_1g PF09334.6 391 1.1e-25 81.9 7.9 2 4 0.03 1.4 -0.8 0.0 47 118 303 374 299 379 0.90 # 719 # 3793 # 1 # ID=2_2;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 2_2 - 1025 tRNA-synt_1g PF09334.6 391 1.1e-25 81.9 7.9 3 4 2.1e-05 0.00099 9.6 0.2 164 238 377 450 364 461 0.80 # 719 # 3793 # 1 # ID=2_2;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 2_2 - 1025 tRNA-synt_1g PF09334.6 391 1.1e-25 81.9 7.9 4 4 1e-14 4.8e-13 40.3 0.3 244 387 508 644 497 646 0.75 # 719 # 3793 # 1 # ID=2_2;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 2_2 - 1025 tRNA-synt_1f PF01921.13 360 8.8e-09 26.3 0.0 1 2 0.013 0.64 0.4 0.0 8 59 18 70 14 82 0.79 # 719 # 3793 # 1 # ID=2_2;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 2_2 - 1025 tRNA-synt_1f PF01921.13 360 8.8e-09 26.3 0.0 2 2 2.2e-09 1e-07 22.7 0.0 273 335 576 638 539 668 0.72 # 719 # 3793 # 1 # ID=2_2;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 3_3 - 186 HTH_29 PF13551.1 112 5e-06 18.6 0.2 1 2 0.014 0.69 2.0 0.0 37 72 124 157 117 163 0.68 # 1713 # 2270 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.310 3_3 - 186 HTH_29 PF13551.1 112 5e-06 18.6 0.2 2 2 9e-07 4.3e-05 15.6 0.0 9 37 156 184 150 185 0.84 # 1713 # 2270 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.310 3_3 - 186 HTH_24 PF13412.1 48 5.6e-06 17.6 0.0 1 1 2.7e-07 1.3e-05 16.4 0.0 10 42 152 184 151 185 0.88 # 1713 # 2270 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.310 5_1 - 225 DDE_Tnp_IS240 PF13610.1 140 3.8e-44 141.9 2.7 1 1 1.1e-45 5.4e-44 141.4 2.7 3 139 72 203 70 204 0.95 # 57 # 731 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.345 1_17 - 156 ABG_transport PF03806.8 502 3.4e-05 13.8 0.2 1 1 9.3e-07 4.5e-05 13.4 0.2 278 329 8 59 1 69 0.83 # 10926 # 11393 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.361 3_3 - 186 HTH_10 PF04967.7 53 7.5e-05 14.2 0.0 1 1 3.2e-06 0.00015 13.2 0.0 22 46 158 182 155 185 0.90 # 1713 # 2270 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.310 3_3 - 186 HTH_7 PF02796.10 45 1.1e-10 33.2 0.5 1 1 5e-12 2.4e-10 32.1 0.5 7 43 145 181 139 182 0.86 # 1713 # 2270 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.310 1_12 - 106 DUF1646 PF07854.7 347 2.9e-05 15.1 0.1 1 1 8.1e-07 3.9e-05 14.7 0.1 258 303 7 53 1 60 0.84 # 6129 # 6446 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.368 3_3 - 186 LacI PF00356.16 46 0.00021 12.8 0.0 1 1 9.4e-06 0.00045 11.7 0.0 3 21 163 181 161 185 0.91 # 1713 # 2270 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.310 1_15 - 671 AAA_14 PF13173.1 128 0.0029 9.4 12.2 1 3 0.00026 0.012 7.4 2.1 2 40 257 294 256 460 0.83 # 7604 # 9616 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 1_15 - 671 AAA_14 PF13173.1 128 0.0029 9.4 12.2 2 3 0.0032 0.15 3.8 1.0 16 91 450 531 445 554 0.67 # 7604 # 9616 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 1_15 - 671 AAA_14 PF13173.1 128 0.0029 9.4 12.2 3 3 0.019 0.89 1.4 0.1 28 64 608 644 592 658 0.74 # 7604 # 9616 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 1_15 - 671 AAA_10 PF12846.2 304 9.6e-57 184.5 2.6 1 1 7.6e-58 1.8e-56 183.6 2.6 1 301 257 584 257 586 0.91 # 7604 # 9616 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 1_22 - 549 AAA_10 PF12846.2 304 7.5e-10 30.5 0.1 1 1 7.7e-11 1.9e-09 29.2 0.1 1 300 31 368 31 371 0.72 # 15089 # 16735 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.305 1_15 - 671 AAA_16 PF13191.1 185 0.0001 14.2 0.0 1 1 1.8e-05 0.00088 11.1 0.0 25 52 258 295 244 532 0.65 # 7604 # 9616 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 3_3 - 186 HTH_23 PF13384.1 50 2.1e-09 28.8 0.0 1 1 1.8e-10 4.4e-09 27.7 0.0 10 42 151 184 143 185 0.82 # 1713 # 2270 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.310 5_1 - 225 HTH_23 PF13384.1 50 7.6e-06 17.4 1.4 1 1 4.1e-06 9.9e-05 13.9 0.1 28 41 41 54 40 57 0.92 # 57 # 731 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.345 1_4 - 78 Fun_ATP-synt_8 PF05933.8 48 6.8e-05 14.8 5.7 1 2 1.4e-06 6.8e-05 14.8 5.7 7 40 22 55 19 57 0.97 # 1166 # 1399 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.256 1_4 - 78 Fun_ATP-synt_8 PF05933.8 48 6.8e-05 14.8 5.7 2 2 0.068 3.3 -0.2 1.6 13 22 61 70 56 74 0.51 # 1166 # 1399 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.256 3_3 - 186 UPF0122 PF04297.9 101 1.4e-05 17.0 0.6 1 1 6.5e-07 3.1e-05 15.9 0.2 22 56 147 182 141 185 0.82 # 1713 # 2270 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.310 3_7 - 575 DUF955 PF06114.8 122 2.1e-05 16.1 0.1 1 1 1.6e-06 7.6e-05 14.3 0.1 16 80 191 252 178 258 0.83 # 5285 # 7009 # 1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.268 1_26 - 208 TIGR02168 TIGR02168 1181 0.024 3.7 32.4 1 2 0.0059 0.28 0.2 4.4 382 428 5 51 1 61 0.57 # 18955 # 19578 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.266 1_26 - 208 TIGR02168 TIGR02168 1181 0.024 3.7 32.4 2 2 7.2e-06 0.00034 9.9 20.1 756 884 81 202 65 207 0.50 # 18955 # 19578 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.266 1_20 - 701 TIGR01051 TIGR01051 632 5.9e-63 205.3 15.7 1 1 3.3e-64 1.6e-62 203.8 15.7 26 620 46 635 35 648 0.81 # 12510 # 14612 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.277 3_3 - 186 HTH_11 PF08279.7 55 2.3e-08 25.5 0.0 1 1 1.2e-09 5.8e-08 24.2 0.0 6 35 151 179 146 185 0.86 # 1713 # 2270 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.310 5_1 - 225 Arg_repressor PF01316.16 70 0.00015 13.3 0.0 1 1 9.2e-06 0.00044 11.7 0.0 24 48 30 54 25 74 0.81 # 57 # 731 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.345 1_22 - 549 TrwB_AAD_bind PF10412.4 386 3.8e-24 76.8 4.5 1 2 1.5e-05 0.00035 11.1 0.0 12 121 28 144 23 169 0.80 # 15089 # 16735 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.305 1_22 - 549 TrwB_AAD_bind PF10412.4 386 3.8e-24 76.8 4.5 2 2 1.4e-22 3.3e-21 67.1 0.0 219 377 260 424 228 431 0.86 # 15089 # 16735 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.305 1_15 - 671 TrwB_AAD_bind PF10412.4 386 2.8e-09 27.8 1.5 1 2 9e-07 2.2e-05 15.0 0.0 10 61 252 305 244 370 0.81 # 7604 # 9616 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 1_15 - 671 TrwB_AAD_bind PF10412.4 386 2.8e-09 27.8 1.5 2 2 1.7e-05 0.00041 10.8 0.0 237 316 495 577 480 603 0.75 # 7604 # 9616 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 3_3 - 186 HTH_28 PF13518.1 52 1.4e-07 23.3 0.1 1 1 1.1e-08 2.6e-07 22.5 0.1 3 37 148 184 146 185 0.82 # 1713 # 2270 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.310 5_1 - 225 HTH_28 PF13518.1 52 4.3e-05 15.4 0.4 1 1 8e-06 0.00019 13.3 0.4 15 36 31 54 17 55 0.80 # 57 # 731 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.345 1_12 - 106 Colicin_V PF02674.11 146 3.7e-05 15.5 1.5 1 1 9.7e-07 4.7e-05 15.2 1.5 43 123 31 104 5 105 0.75 # 6129 # 6446 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.368 5_1 - 225 HTH_Tnp_4 PF13613.1 53 9.3e-05 13.9 0.3 1 1 6.5e-06 0.00031 12.2 0.3 30 49 41 60 18 63 0.84 # 57 # 731 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.345 3_3 - 186 CENP-B_N PF04218.8 53 2.3e-05 15.7 0.2 1 1 9.4e-07 4.5e-05 14.8 0.2 9 44 144 181 143 185 0.92 # 1713 # 2270 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.310 2_2 - 1025 TIGR00422 TIGR00422 863 2.4e-140 460.6 24.0 1 3 1.9e-41 9.3e-40 127.8 1.3 5 237 5 238 1 265 0.92 # 719 # 3793 # 1 # ID=2_2;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 2_2 - 1025 TIGR00422 TIGR00422 863 2.4e-140 460.6 24.0 2 3 3.2e-106 1.5e-104 342.1 8.8 256 841 294 897 287 915 0.91 # 719 # 3793 # 1 # ID=2_2;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 2_2 - 1025 TIGR00422 TIGR00422 863 2.4e-140 460.6 24.0 3 3 0.0077 0.37 0.1 0.5 731 791 948 1006 938 1022 0.80 # 719 # 3793 # 1 # ID=2_2;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 3_3 - 186 HTH_Tnp_ISL3 PF13542.1 52 7.4e-05 13.8 0.0 1 1 3.8e-06 0.00018 12.6 0.0 26 51 159 183 154 184 0.89 # 1713 # 2270 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.310 1_15 - 671 DUF87 PF01935.12 229 1.7e-11 36.2 5.2 1 2 0.0099 0.47 2.0 0.7 121 191 103 185 70 198 0.67 # 7604 # 9616 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 1_15 - 671 DUF87 PF01935.12 229 1.7e-11 36.2 5.2 2 2 3.6e-13 1.7e-11 36.2 5.2 19 209 253 454 237 484 0.69 # 7604 # 9616 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 2_2 - 1025 Zn-ribbon_8 PF09723.5 42 0.0003 12.6 0.3 1 1 4.5e-05 0.0022 9.9 0.0 14 40 480 505 478 506 0.89 # 719 # 3793 # 1 # ID=2_2;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 5_1 - 225 rve PF00665.21 120 3.9e-18 57.6 0.5 1 2 0.041 2 0.5 0.0 83 102 30 49 12 52 0.89 # 57 # 731 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.345 5_1 - 225 rve PF00665.21 120 3.9e-18 57.6 0.5 2 2 5.4e-19 2.6e-17 55.0 0.3 2 117 66 174 65 176 0.93 # 57 # 731 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.345 3_3 - 186 HTH_38 PF13936.1 44 2.6e-07 22.0 0.1 1 1 1.3e-08 6.1e-07 20.9 0.1 8 42 146 181 141 182 0.85 # 1713 # 2270 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.310 2_1 - 167 Methyltransf_23 PF13489.1 161 3.2e-05 15.6 0.0 1 1 7.5e-07 3.6e-05 15.4 0.0 71 120 16 67 4 131 0.82 # 192 # 692 # 1 # ID=2_1;partial=00;start_type=TTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.230 3_3 - 186 Sigma70_r4 PF04545.11 50 1.8e-05 15.9 0.0 1 1 8.7e-07 4.2e-05 14.7 0.0 6 42 144 181 141 184 0.84 # 1713 # 2270 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.310 1_26 - 208 DUF1453 PF07301.6 148 0.00018 13.3 0.0 1 1 5.4e-06 0.00026 12.8 0.0 80 107 43 70 39 86 0.79 # 18955 # 19578 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.266 1_8 - 87 HTH_3 PF01381.17 55 5.6e-10 30.9 0.0 1 1 3.1e-11 7.3e-10 30.5 0.0 2 52 18 69 17 72 0.95 # 3049 # 3309 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 3_3 - 186 HTH_3 PF01381.17 55 0.00021 13.0 0.0 1 1 1.7e-05 0.00042 12.1 0.0 10 31 160 181 151 185 0.86 # 1713 # 2270 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.310 5_1 - 225 DDE_3 PF13358.1 146 4.4e-06 18.4 0.3 1 1 1.9e-07 8.9e-06 17.4 0.3 26 95 74 143 60 206 0.76 # 57 # 731 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.345 1_12 - 106 SecE PF00584.15 57 0.00048 11.6 3.9 1 3 0.046 2.2 -0.1 0.1 27 38 8 19 3 24 0.59 # 6129 # 6446 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.368 1_12 - 106 SecE PF00584.15 57 0.00048 11.6 3.9 2 3 0.084 4 -1.0 0.1 31 38 47 54 34 63 0.54 # 6129 # 6446 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.368 1_12 - 106 SecE PF00584.15 57 0.00048 11.6 3.9 3 3 1e-05 0.00049 11.6 0.1 21 49 73 101 73 104 0.90 # 6129 # 6446 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.368 5_1 - 225 DDE_Tnp_IS66 PF03050.9 271 2.5e-07 22.0 3.9 1 2 2.1e-08 5e-07 21.0 1.1 16 97 21 96 7 136 0.76 # 57 # 731 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.345 5_1 - 225 DDE_Tnp_IS66 PF03050.9 271 2.5e-07 22.0 3.9 2 2 0.013 0.32 2.0 0.1 243 264 163 184 132 190 0.86 # 57 # 731 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.345 3_5 - 539 DDE_Tnp_IS66 PF03050.9 271 0.00016 12.8 0.4 1 1 1.1e-05 0.00026 12.1 0.4 145 248 291 402 277 419 0.79 # 3466 # 5082 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.251 3_3 - 186 TrmB PF01978.14 68 1.8e-06 19.6 0.1 1 1 1.3e-07 3.2e-06 18.7 0.1 12 45 148 182 144 185 0.83 # 1713 # 2270 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.310 1_20 - 701 TrmB PF01978.14 68 0.0003 12.4 0.4 1 2 0.00087 0.021 6.5 0.0 3 24 384 405 382 408 0.88 # 12510 # 14612 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.277 1_20 - 701 TrmB PF01978.14 68 0.0003 12.4 0.4 2 2 0.084 2 0.1 0.0 41 59 517 535 506 539 0.78 # 12510 # 14612 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.277 3_3 - 186 HTH_26 PF13443.1 63 8.4e-05 14.7 0.1 1 1 8.1e-06 0.00039 12.5 0.0 4 32 153 181 151 184 0.87 # 1713 # 2270 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.310 3_3 - 186 DUF134 PF02001.11 106 0.00024 12.9 0.1 1 1 8.9e-06 0.00043 12.1 0.1 51 81 153 183 133 185 0.84 # 1713 # 2270 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.310 1_15 - 671 ABC_tran PF00005.22 137 0.00017 13.8 3.1 1 1 2e-05 0.00095 11.4 2.2 12 51 258 299 250 394 0.56 # 7604 # 9616 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 1_21 - 159 zf-DHHC PF01529.15 174 0.0005 11.4 1.0 1 1 1.4e-05 0.00069 10.9 1.0 96 159 5 89 4 103 0.84 # 14628 # 15104 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.268 3_3 - 186 Rrf2 PF02082.15 83 0.00028 12.9 0.0 1 1 2.1e-05 0.001 11.1 0.0 17 51 151 185 149 185 0.86 # 1713 # 2270 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.310 1_15 - 671 AAA_29 PF13555.1 62 2.3e-05 15.8 0.2 1 1 1.8e-06 8.4e-05 14.0 0.1 19 39 256 273 243 278 0.81 # 7604 # 9616 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 2_2 - 1025 TIGR00392 TIGR00392 861 3.5e-288 949.9 16.5 1 1 9.5e-290 4.6e-288 949.5 16.5 10 857 7 825 1 828 0.97 # 719 # 3793 # 1 # ID=2_2;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_22 - 549 TraG-D_C PF12696.2 128 7.3e-38 121.2 0.1 1 1 1.5e-39 7.3e-38 121.2 0.1 1 127 289 413 289 414 0.90 # 15089 # 16735 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.305 1_20 - 701 zf-C4_Topoisom PF01396.14 39 7.3e-06 17.4 2.5 1 1 3.4e-07 1.6e-05 16.3 2.5 3 35 616 646 614 649 0.86 # 12510 # 14612 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.277 5_1 - 225 HTH_32 PF13565.1 77 4.6e-08 25.7 0.6 1 2 6.3e-07 1.5e-05 17.6 0.1 49 76 26 50 11 51 0.86 # 57 # 731 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.345 5_1 - 225 HTH_32 PF13565.1 77 4.6e-08 25.7 0.6 2 2 0.0023 0.056 6.2 0.0 29 63 136 171 100 183 0.74 # 57 # 731 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.345 3_3 - 186 HTH_32 PF13565.1 77 4.3e-07 22.6 0.1 1 1 7.4e-08 1.8e-06 20.6 0.1 16 77 127 180 118 180 0.70 # 1713 # 2270 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.310 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/703a1a17-607e-42a1-9d42-d505ea85d0e0 # Target file: checkm_output/bins/pGCA_001641045.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001641045.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/703a1a17-607e-42a1-9d42-d505ea85d0e0 checkm_output/bins/pGCA_001641045.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Staphylococcus/training_20210111 # Date: Mon Jan 11 14:54:05 2021 # [ok]