# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_6 - 253 GerE PF00196.14 58 0.00025 11.9 0.1 1 1 1.4e-05 0.00052 10.9 0.1 11 35 221 245 219 250 0.93 # 5584 # 6342 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_2 - 600 Peptidase_M56 PF05569.6 299 5e-95 309.3 14.3 1 1 1.4e-96 5e-95 309.3 14.3 2 299 18 312 17 312 0.99 # 1151 # 2950 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.259 1_19 - 131 TIGR01978 TIGR01978 243 2.4e-12 37.9 1.3 1 1 8e-14 2.9e-12 37.6 1.3 128 208 36 117 5 124 0.77 # 11677 # 12069 # 1 # ID=1_19;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_23 - 80 Phage_CI_repr PF07022.8 66 3.9e-09 28.0 0.0 1 1 1.2e-10 4.4e-09 27.9 0.0 14 62 17 65 6 69 0.88 # 14830 # 15069 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.304 1_19 - 131 AAA_13 PF13166.1 712 1.8e-06 18.0 0.2 1 1 7.1e-08 2.6e-06 17.6 0.2 499 578 52 120 11 127 0.81 # 11677 # 12069 # 1 # ID=1_19;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 2_2 - 140 MarR_2 PF12802.2 62 7.5e-14 42.7 0.0 1 1 8.1e-15 9.7e-14 42.4 0.0 1 61 29 87 29 88 0.95 # 415 # 834 # 1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.262 1_4 - 198 MarR_2 PF12802.2 62 2.3e-07 22.0 0.0 1 2 0.018 0.21 2.8 0.1 23 45 112 134 101 137 0.86 # 3584 # 4177 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 1_4 - 198 MarR_2 PF12802.2 62 2.3e-07 22.0 0.0 2 2 8.9e-07 1.1e-05 16.6 0.0 6 48 148 187 144 188 0.90 # 3584 # 4177 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 1_7 - 105 MarR_2 PF12802.2 62 3.2e-06 18.3 0.0 1 1 3.8e-07 4.6e-06 17.8 0.0 5 57 16 65 13 68 0.86 # 6403 # 6717 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_23 - 80 HTH_Crp_2 PF13545.1 76 4.7e-05 14.7 0.0 1 1 5e-06 9.1e-05 13.8 0.0 30 47 17 34 2 35 0.87 # 14830 # 15069 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.304 2_2 - 140 HTH_Crp_2 PF13545.1 76 0.00021 12.6 0.0 1 1 2e-05 0.00036 11.8 0.0 32 67 51 91 42 99 0.82 # 415 # 834 # 1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.262 1_23 - 80 HTH_17 PF12728.2 51 2.9e-05 15.8 0.0 1 1 1.9e-06 6.7e-05 14.6 0.0 4 22 18 36 16 53 0.85 # 14830 # 15069 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.304 1_6 - 253 AAA_22 PF13401.1 131 9.7e-13 39.9 0.2 1 1 1.2e-13 4.5e-12 37.7 0.2 2 59 25 99 24 152 0.75 # 5584 # 6342 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_23 - 80 HTH_19 PF12844.2 64 5.6e-18 56.3 0.2 1 1 3.7e-19 6.7e-18 56.1 0.2 2 61 5 64 4 67 0.96 # 14830 # 15069 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.304 1_6 - 253 HTH_19 PF12844.2 64 9.4e-05 14.0 0.3 1 1 1.2e-05 0.00021 12.8 0.3 10 34 226 250 223 252 0.90 # 5584 # 6342 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_6 - 253 Sigma70_r4_2 PF08281.7 54 0.00075 10.5 2.3 1 2 0.048 1.7 -0.3 0.0 14 32 109 127 99 127 0.81 # 5584 # 6342 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_6 - 253 Sigma70_r4_2 PF08281.7 54 0.00075 10.5 2.3 2 2 5.2e-05 0.0019 9.2 0.1 18 44 221 246 218 247 0.89 # 5584 # 6342 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_4 - 198 Mga PF05043.8 87 3.6e-07 22.0 0.4 1 2 0.0074 0.27 3.1 0.1 24 52 104 132 74 137 0.83 # 3584 # 4177 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 1_4 - 198 Mga PF05043.8 87 3.6e-07 22.0 0.4 2 2 4.6e-07 1.6e-05 16.6 0.0 17 55 148 185 144 187 0.92 # 3584 # 4177 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 1_4 - 198 HTH_30 PF13556.1 59 1.1e-05 16.5 0.0 1 1 6.3e-07 2.3e-05 15.5 0.0 3 38 151 186 150 187 0.94 # 3584 # 4177 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 1_23 - 80 HTH_31 PF13560.1 64 2.2e-13 41.7 0.0 1 1 7.1e-15 2.6e-13 41.5 0.0 2 59 3 59 2 66 0.95 # 14830 # 15069 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.304 1_4 - 198 HTH_22 PF13309.1 64 6.3e-08 23.8 0.3 1 2 0.026 0.47 1.8 0.0 23 38 70 85 64 86 0.87 # 3584 # 4177 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 1_4 - 198 HTH_22 PF13309.1 64 6.3e-08 23.8 0.3 2 2 1.8e-07 3.2e-06 18.4 0.1 17 64 141 182 129 182 0.75 # 3584 # 4177 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 1_6 - 253 HTH_22 PF13309.1 64 1.9e-06 19.1 2.0 1 2 0.0029 0.052 4.9 0.3 3 41 162 200 160 202 0.93 # 5584 # 6342 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_6 - 253 HTH_22 PF13309.1 64 1.9e-06 19.1 2.0 2 2 1.3e-05 0.00024 12.4 0.0 43 61 229 247 223 248 0.92 # 5584 # 6342 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_23 - 80 HTH_37 PF13744.1 80 2.2e-08 25.3 0.6 1 1 8.7e-10 3.1e-08 24.9 0.6 18 66 2 49 1 63 0.81 # 14830 # 15069 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.304 1_4 - 198 HTH_36 PF13730.1 55 1.2e-05 16.9 0.1 1 1 1.4e-06 2.5e-05 15.9 0.1 28 52 163 187 144 188 0.92 # 3584 # 4177 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 1_26 - 328 HTH_36 PF13730.1 55 6e-05 14.7 0.6 1 1 8.4e-06 0.00015 13.4 0.6 2 55 31 95 30 95 0.75 # 17200 # 18183 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.282 1_3 - 127 Penicillinase_R PF03965.11 115 1.4e-37 119.8 1.3 1 1 8.6e-39 1.6e-37 119.7 1.3 1 114 8 121 8 122 0.99 # 2940 # 3320 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.247 2_2 - 140 Penicillinase_R PF03965.11 115 0.00018 13.1 0.0 1 1 1.5e-05 0.00028 12.5 0.0 1 58 31 84 31 126 0.83 # 415 # 834 # 1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.262 2_2 - 140 B-block_TFIIIC PF04182.7 75 2.1e-05 15.8 0.8 1 2 0.0079 0.28 2.6 0.1 29 48 12 31 4 47 0.83 # 415 # 834 # 1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.262 2_2 - 140 B-block_TFIIIC PF04182.7 75 2.1e-05 15.8 0.8 2 2 1.3e-05 0.00046 11.6 0.1 25 54 54 83 47 100 0.80 # 415 # 834 # 1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.262 1_25 - 197 ALMT PF11744.3 406 0.022 4.8 7.1 1 1 0.00078 0.028 4.4 7.1 245 354 18 133 9 182 0.60 # 16029 # 16619 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.294 1_8 - 191 ArsB PF02040.10 423 3.4e-100 327.3 24.2 1 1 2.3e-101 4.1e-100 327.0 24.2 1 181 4 184 4 188 0.99 # 6717 # 7289 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_9 - 156 ArsB PF02040.10 423 5.1e-86 280.6 14.8 1 1 3.2e-87 5.7e-86 280.4 14.8 273 423 2 152 1 152 0.99 # 7540 # 8007 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.350 2_1 - 97 ADH_N PF08240.7 109 6.9e-11 33.4 0.0 1 1 2.6e-12 9.4e-11 33.0 0.0 2 62 29 87 28 92 0.90 # 1 # 291 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.320 1_7 - 105 HTH_34 PF13601.1 80 2.9e-05 15.6 0.0 1 1 3.6e-06 4.3e-05 15.0 0.0 2 52 18 67 17 76 0.91 # 6403 # 6717 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 2_2 - 140 HTH_34 PF13601.1 80 0.00013 13.5 0.1 1 1 2.1e-05 0.00025 12.6 0.1 4 63 37 95 34 107 0.87 # 415 # 834 # 1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.262 1_33 - 132 HTH_34 PF13601.1 80 0.00017 13.1 0.2 1 1 2.3e-05 0.00028 12.4 0.2 2 49 44 91 43 95 0.93 # 22122 # 22517 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.253 1_5 - 481 HTH_29 PF13551.1 112 5.8e-07 21.2 0.1 1 1 1.7e-07 2.1e-06 19.4 0.0 14 76 35 96 30 112 0.84 # 4149 # 5591 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.318 1_6 - 253 HTH_29 PF13551.1 112 1e-06 20.4 0.1 1 1 2.8e-07 3.4e-06 18.7 0.0 3 34 220 250 219 251 0.92 # 5584 # 6342 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_4 - 198 HTH_29 PF13551.1 112 7.2e-06 17.7 0.7 1 2 0.052 0.63 1.7 0.2 33 67 122 154 119 160 0.71 # 3584 # 4177 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 1_4 - 198 HTH_29 PF13551.1 112 7.2e-06 17.7 0.7 2 2 8.5e-06 0.0001 13.9 0.0 7 39 156 187 154 192 0.89 # 3584 # 4177 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 2_2 - 140 MarR PF01047.17 59 5.8e-15 46.3 0.0 1 1 1e-15 9.3e-15 45.7 0.0 1 59 31 89 31 89 0.98 # 415 # 834 # 1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.262 1_3 - 127 MarR PF01047.17 59 5.5e-09 27.2 0.1 1 1 1.1e-09 9.6e-09 26.4 0.1 1 54 8 65 8 65 0.97 # 2940 # 3320 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.247 1_4 - 198 MarR PF01047.17 59 1.8e-06 19.1 0.1 1 1 4.9e-07 4.4e-06 17.9 0.0 1 45 145 188 145 188 0.91 # 3584 # 4177 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 1_7 - 105 MarR PF01047.17 59 2.6e-05 15.4 0.0 1 1 5.9e-06 5.3e-05 14.4 0.0 16 52 28 64 15 67 0.83 # 6403 # 6717 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_7 - 105 HTH_20 PF12840.2 61 7.4e-15 46.1 0.0 1 1 8.2e-16 9.8e-15 45.7 0.0 2 60 8 65 7 66 0.97 # 6403 # 6717 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_33 - 132 HTH_20 PF12840.2 61 2.8e-05 15.4 0.0 1 1 3.2e-06 3.8e-05 15.0 0.0 15 57 48 89 35 93 0.88 # 22122 # 22517 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.253 1_4 - 198 HTH_20 PF12840.2 61 0.00028 12.2 0.0 1 1 0.00013 0.0016 9.8 0.0 15 50 152 186 149 189 0.90 # 3584 # 4177 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 1_7 - 105 HTH_5 PF01022.15 47 2.6e-22 69.8 0.2 1 1 1.5e-23 2.6e-22 69.8 0.2 1 47 15 61 15 61 0.98 # 6403 # 6717 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_33 - 132 HTH_5 PF01022.15 47 1.9e-17 54.2 1.6 1 1 1.8e-18 3.2e-17 53.5 1.6 1 45 41 86 41 88 0.95 # 22122 # 22517 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.253 1_23 - 80 HHH_5 PF14520.1 60 0.00024 12.8 0.1 1 1 1.1e-05 0.00039 12.1 0.1 20 56 2 37 1 40 0.91 # 14830 # 15069 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.304 1_34 - 226 TIGR02817 TIGR02817 336 2.4e-11 34.7 0.0 1 1 8.8e-13 3.2e-11 34.3 0.0 100 215 3 120 1 134 0.83 # 22891 # 23568 # -1 # ID=1_34;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.311 1_4 - 198 Terminase_5 PF06056.7 58 0.00021 12.3 0.1 1 1 1.1e-05 0.00039 11.5 0.1 7 36 154 183 153 194 0.88 # 3584 # 4177 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 1_4 - 198 HTH_24 PF13412.1 48 8.3e-12 35.9 0.1 1 1 8.5e-13 1.5e-11 35.0 0.1 1 44 145 187 145 188 0.97 # 3584 # 4177 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 2_2 - 140 HTH_24 PF13412.1 48 6.8e-05 13.8 0.0 1 1 6.9e-06 0.00012 12.9 0.0 8 48 38 78 32 78 0.89 # 415 # 834 # 1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.262 1_19 - 131 AAA_21 PF13304.1 303 1.1e-11 36.6 0.3 1 1 3.3e-13 1.2e-11 36.5 0.3 195 301 19 115 1 117 0.69 # 11677 # 12069 # 1 # ID=1_19;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_4 - 198 HTH_AsnC-type PF13404.1 42 8.1e-05 13.7 0.0 1 1 4.7e-06 0.00017 12.6 0.0 3 42 147 185 145 185 0.87 # 3584 # 4177 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 1_5 - 481 HTH_Tnp_Mu_2 PF09039.6 108 1.5e-05 16.2 0.1 1 2 1.1e-05 0.0004 11.6 0.0 30 102 77 148 57 155 0.81 # 4149 # 5591 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.318 1_5 - 481 HTH_Tnp_Mu_2 PF09039.6 108 1.5e-05 16.2 0.1 2 2 0.012 0.44 1.8 0.0 24 52 302 330 287 336 0.81 # 4149 # 5591 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.318 1_4 - 198 HTH_IclR PF09339.5 52 1.4e-05 16.2 0.0 1 1 1.1e-06 3.8e-05 14.8 0.0 7 43 151 185 147 187 0.86 # 3584 # 4177 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 1_4 - 198 HTH_7 PF02796.10 45 1.9e-20 64.0 0.1 1 1 2.3e-21 4.2e-20 62.9 0.1 1 44 140 183 140 184 0.98 # 3584 # 4177 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 1_6 - 253 HTH_7 PF02796.10 45 1.5e-18 57.9 0.5 1 1 8.5e-20 1.5e-18 57.9 0.5 1 44 200 251 200 252 0.95 # 5584 # 6342 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_19 - 131 SbcCD_C PF13558.1 90 2.2e-06 19.0 0.0 1 1 1e-06 3.6e-05 15.2 0.0 10 88 31 96 22 98 0.82 # 11677 # 12069 # 1 # ID=1_19;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 2_2 - 140 DUF2250 PF10007.4 93 5.9e-05 14.5 0.1 1 1 3.2e-06 0.00011 13.5 0.1 7 58 32 83 26 130 0.83 # 415 # 834 # 1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.262 1_4 - 198 HTH_DeoR PF08220.7 57 0.0002 12.4 0.0 1 1 2.7e-05 0.00048 11.2 0.0 17 41 163 187 148 189 0.85 # 3584 # 4177 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 1_3 - 127 HTH_DeoR PF08220.7 57 0.00029 11.9 0.3 1 1 6.9e-05 0.0012 9.9 0.1 8 46 18 60 14 62 0.76 # 2940 # 3320 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.247 1_22 - 287 Rep_3 PF01051.16 222 1.1e-49 160.5 17.7 1 1 3.7e-51 1.3e-49 160.2 17.7 3 222 4 220 2 220 0.95 # 13883 # 14743 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.266 1_4 - 198 Phage_antitermQ PF06530.7 126 0.00011 13.3 0.0 1 2 0.028 1 0.4 0.0 52 94 58 100 38 112 0.82 # 3584 # 4177 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 1_4 - 198 Phage_antitermQ PF06530.7 126 0.00011 13.3 0.0 2 2 2.3e-05 0.00084 10.4 0.0 62 103 144 185 141 191 0.90 # 3584 # 4177 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 1_34 - 226 Epimerase PF01370.16 236 7.1e-05 13.7 0.0 1 1 3e-06 0.00011 13.2 0.0 1 39 54 93 54 119 0.80 # 22891 # 23568 # -1 # ID=1_34;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.311 1_34 - 226 NmrA PF05368.8 233 1.6e-06 19.0 0.7 1 1 1.1e-07 3.9e-06 17.7 0.6 1 52 54 107 54 166 0.89 # 22891 # 23568 # -1 # ID=1_34;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.311 1_6 - 253 HTH_23 PF13384.1 50 8.9e-11 32.7 0.1 1 1 2.7e-11 2.5e-10 31.3 0.1 5 39 216 250 212 251 0.90 # 5584 # 6342 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_4 - 198 HTH_23 PF13384.1 50 7.4e-09 26.6 0.0 1 1 2e-09 1.8e-08 25.4 0.0 13 43 156 185 151 193 0.87 # 3584 # 4177 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 1_23 - 80 HTH_23 PF13384.1 50 2.1e-07 22.0 0.1 1 1 3.9e-08 3.5e-07 21.3 0.1 8 38 4 36 1 42 0.85 # 14830 # 15069 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.304 1_5 - 481 HTH_23 PF13384.1 50 7.8e-07 20.2 0.0 1 1 2e-07 1.8e-06 19.0 0.0 2 49 17 65 16 66 0.88 # 4149 # 5591 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.318 1_7 - 105 TFIIE_alpha PF02002.12 105 1.1e-05 16.4 0.0 1 1 7e-07 1.3e-05 16.2 0.0 7 82 10 82 4 98 0.83 # 6403 # 6717 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_33 - 132 TFIIE_alpha PF02002.12 105 1.6e-05 15.9 1.9 1 1 1.9e-06 3.4e-05 14.8 1.6 3 102 32 125 30 128 0.90 # 22122 # 22517 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.253 1_4 - 198 UPF0122 PF04297.9 101 3.6e-05 15.2 0.1 1 1 3e-06 0.00011 13.7 0.0 18 59 145 186 142 190 0.92 # 3584 # 4177 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 1_3 - 127 S-AdoMet_synt_M PF02772.11 120 0.00019 12.9 1.9 1 2 1.4e-05 0.00051 11.5 1.1 64 106 21 62 4 74 0.78 # 2940 # 3320 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.247 1_3 - 127 S-AdoMet_synt_M PF02772.11 120 0.00019 12.9 1.9 2 2 0.043 1.5 0.3 0.0 63 90 88 115 69 126 0.62 # 2940 # 3320 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.247 1_25 - 197 TIGR02168 TIGR02168 1181 0.00054 8.8 25.4 1 1 1.8e-05 0.00066 8.5 25.4 287 452 22 184 4 190 0.75 # 16029 # 16619 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.294 1_34 - 226 DapB_N PF01113.15 124 9.1e-07 20.3 0.3 1 2 0.026 0.94 0.9 0.0 92 103 23 34 17 46 0.84 # 22891 # 23568 # -1 # ID=1_34;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.311 1_34 - 226 DapB_N PF01113.15 124 9.1e-07 20.3 0.3 2 2 2.4e-07 8.6e-06 17.2 0.2 3 97 54 144 52 152 0.78 # 22891 # 23568 # -1 # ID=1_34;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.311 1_4 - 198 HTH_11 PF08279.7 55 5.5e-09 27.1 0.0 1 1 1.1e-09 1.3e-08 25.9 0.0 4 41 151 186 147 189 0.83 # 3584 # 4177 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 1_6 - 253 HTH_11 PF08279.7 55 1.7e-05 16.0 0.1 1 1 3.6e-06 4.3e-05 14.6 0.1 5 34 221 247 219 248 0.82 # 5584 # 6342 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_23 - 80 HTH_11 PF08279.7 55 6e-05 14.2 0.2 1 1 8.1e-06 9.7e-05 13.5 0.2 15 34 15 34 2 34 0.78 # 14830 # 15069 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.304 1_23 - 80 P22_Cro PF14549.1 60 5.9e-06 17.5 0.1 1 1 3e-07 1.1e-05 16.7 0.1 11 30 17 36 16 44 0.89 # 14830 # 15069 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.304 1_5 - 481 HTH_28 PF13518.1 52 1.5e-11 35.7 0.0 1 1 1e-11 9.3e-11 33.1 0.1 1 45 21 66 21 73 0.95 # 4149 # 5591 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.318 1_6 - 253 HTH_28 PF13518.1 52 1.8e-09 29.0 0.1 1 1 6e-10 5.4e-09 27.5 0.1 3 33 219 249 219 251 0.95 # 5584 # 6342 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_4 - 198 HTH_28 PF13518.1 52 1.5e-05 16.5 0.0 1 1 4.4e-06 3.9e-05 15.1 0.0 8 37 156 185 155 190 0.92 # 3584 # 4177 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 1_23 - 80 HTH_28 PF13518.1 52 1.9e-05 16.2 0.1 1 1 5.4e-06 4.8e-05 14.8 0.2 11 32 14 35 2 38 0.80 # 14830 # 15069 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.304 1_34 - 226 ADH_zinc_N PF00107.21 130 3.7e-17 53.6 0.0 1 1 1.6e-18 5.7e-17 53.0 0.0 1 117 62 172 62 187 0.90 # 22891 # 23568 # -1 # ID=1_34;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.311 1_4 - 198 HTH_Tnp_4 PF13613.1 53 2.7e-05 15.2 0.0 1 1 1.5e-06 5.5e-05 14.2 0.0 24 45 165 186 159 187 0.90 # 3584 # 4177 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 1_34 - 226 NAD_binding_10 PF13460.1 183 1.8e-05 16.3 0.1 1 1 6.1e-07 2.2e-05 16.0 0.1 1 38 54 94 54 146 0.87 # 22891 # 23568 # -1 # ID=1_34;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.311 1_30 - 155 CodY PF06018.9 177 0.00015 12.5 1.5 1 1 5.6e-06 0.0002 12.1 1.5 46 104 29 87 22 101 0.82 # 19357 # 19821 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.329 1_8 - 191 CitMHS PF03600.11 351 2.9e-12 37.2 21.5 1 1 3.7e-13 6.7e-12 36.0 21.5 3 151 8 154 1 183 0.86 # 6717 # 7289 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_9 - 156 CitMHS PF03600.11 351 2.5e-06 17.7 6.7 1 1 1.4e-07 2.5e-06 17.7 6.7 257 350 5 95 2 96 0.76 # 7540 # 8007 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.350 1_6 - 253 CENP-B_N PF04218.8 53 5e-09 27.0 3.8 1 2 9.2e-05 0.0033 8.4 0.4 13 35 170 192 168 195 0.87 # 5584 # 6342 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_6 - 253 CENP-B_N PF04218.8 53 5e-09 27.0 3.8 2 2 3.6e-08 1.3e-06 19.3 0.2 14 46 220 252 219 252 0.95 # 5584 # 6342 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_4 - 198 GntR PF00392.16 64 0.00031 11.7 0.0 1 1 1.6e-05 0.00059 10.8 0.0 23 51 162 187 151 188 0.83 # 3584 # 4177 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 1_6 - 253 HTH_Tnp_ISL3 PF13542.1 52 6.4e-06 16.8 0.1 1 2 0.0053 0.19 2.5 0.0 31 51 40 60 38 61 0.89 # 5584 # 6342 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_6 - 253 HTH_Tnp_ISL3 PF13542.1 52 6.4e-06 16.8 0.1 2 2 5.8e-06 0.00021 12.0 0.0 18 47 219 248 214 250 0.86 # 5584 # 6342 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_25 - 197 Glu_synthase PF01645.12 368 0.00032 11.1 3.5 1 1 1.3e-05 0.00047 10.5 3.5 11 71 49 108 37 121 0.84 # 16029 # 16619 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.294 1_19 - 131 AAA_15 PF13175.1 415 2.1e-06 18.4 1.0 1 1 1e-07 3.7e-06 17.6 1.0 291 414 9 115 2 116 0.68 # 11677 # 12069 # 1 # ID=1_19;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 2_2 - 140 Fe_dep_repress PF01325.14 60 0.00015 13.2 0.0 1 1 7.1e-06 0.00026 12.5 0.0 24 53 49 78 44 83 0.87 # 415 # 834 # 1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.262 1_5 - 481 rve_3 PF13683.1 67 3.6e-06 18.0 0.1 1 1 5.4e-07 2e-05 15.6 0.1 2 35 258 291 257 331 0.73 # 4149 # 5591 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.318 1_6 - 253 TetR_N PF00440.18 47 0.00014 13.0 0.1 1 1 1.8e-05 0.00033 11.8 0.1 18 35 230 247 227 248 0.93 # 5584 # 6342 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_4 - 198 TetR_N PF00440.18 47 0.00024 12.3 0.1 1 1 5.2e-05 0.00093 10.4 0.0 16 36 160 180 158 180 0.92 # 3584 # 4177 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 1_5 - 481 rve PF00665.21 120 4.2e-27 86.1 0.0 1 1 2.4e-28 8.5e-27 85.2 0.0 2 119 156 285 155 286 0.88 # 4149 # 5591 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.318 1_23 - 80 HTH_25 PF13413.1 62 2e-05 15.7 0.2 1 1 8.6e-07 3.1e-05 15.1 0.2 3 28 8 33 6 41 0.87 # 14830 # 15069 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.304 1_6 - 253 HTH_Tnp_1 PF01527.15 76 1e-05 17.0 0.1 1 1 3.1e-06 5.6e-05 14.6 0.0 15 42 221 247 219 250 0.88 # 5584 # 6342 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_5 - 481 HTH_Tnp_1 PF01527.15 76 2e-05 16.0 0.0 1 1 2.5e-06 4.5e-05 14.9 0.0 11 54 21 65 14 95 0.78 # 4149 # 5591 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.318 1_23 - 80 Phage_terminase PF10668.4 60 7.5e-05 14.0 0.5 1 1 3e-06 0.00011 13.5 0.5 24 47 17 40 8 46 0.86 # 14830 # 15069 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.304 1_6 - 253 HTH_38 PF13936.1 44 4.3e-08 24.2 1.4 1 1 5e-09 9e-08 23.1 0.1 15 39 223 247 212 248 0.91 # 5584 # 6342 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_4 - 198 HTH_38 PF13936.1 44 7.8e-07 20.1 0.0 1 1 1.1e-07 1.9e-06 18.9 0.0 4 41 144 181 141 183 0.90 # 3584 # 4177 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 1_23 - 80 Sigma70_r4 PF04545.11 50 1.1e-05 16.3 0.1 1 1 2.3e-06 4.2e-05 14.3 0.1 16 41 11 36 5 38 0.85 # 14830 # 15069 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.304 1_6 - 253 Sigma70_r4 PF04545.11 50 8.8e-05 13.3 0.2 1 1 1.1e-05 0.0002 12.2 0.2 10 41 214 249 211 251 0.84 # 5584 # 6342 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 2_2 - 140 HTH_27 PF13463.1 68 2.1e-10 32.4 0.0 1 1 1.5e-11 2.8e-10 31.9 0.0 1 67 31 96 31 97 0.90 # 415 # 834 # 1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.262 1_3 - 127 HTH_27 PF13463.1 68 0.00023 13.0 0.0 1 1 8e-05 0.0014 10.4 0.0 4 54 11 64 8 70 0.92 # 2940 # 3320 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.247 1_2 - 600 SprT-like PF10263.4 157 7.9e-05 13.8 0.0 1 1 5.4e-06 0.00019 12.6 0.0 7 71 159 220 154 223 0.79 # 1151 # 2950 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.259 1_4 - 198 HTH_Tnp_IS630 PF01710.11 120 0.00014 13.0 0.0 1 1 7.8e-06 0.00028 12.1 0.0 17 46 159 188 144 196 0.79 # 3584 # 4177 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 1_32 - 52 Cad PF03596.8 191 1.7e-20 65.0 0.6 1 1 9.9e-22 1.8e-20 64.9 0.6 144 191 2 49 1 49 0.96 # 21948 # 22103 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.244 1_31 - 37 Cad PF03596.8 191 4.1e-07 21.3 0.2 1 1 2.6e-08 4.6e-07 21.1 0.2 1 24 12 35 12 36 0.94 # 21481 # 21591 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_6 - 253 HTH_40 PF14493.1 91 2.4e-05 16.0 0.1 1 1 4.8e-06 8.7e-05 14.2 0.1 7 31 222 246 219 247 0.93 # 5584 # 6342 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_4 - 198 HTH_40 PF14493.1 91 3.3e-05 15.6 0.0 1 1 3.6e-06 6.4e-05 14.7 0.0 8 41 155 188 153 194 0.88 # 3584 # 4177 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 1_23 - 80 HTH_3 PF01381.17 55 1.7e-18 57.8 0.1 1 1 1.2e-19 2.1e-18 57.4 0.1 1 54 7 60 7 61 0.97 # 14830 # 15069 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.304 1_6 - 253 HTH_3 PF01381.17 55 6.6e-06 17.5 0.3 1 1 3.6e-07 6.6e-06 17.5 0.3 6 31 225 250 223 252 0.91 # 5584 # 6342 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 2_2 - 140 TrmB PF01978.14 68 2.7e-07 21.7 0.0 1 1 9.5e-08 8.5e-07 20.2 0.0 1 58 26 83 25 98 0.92 # 415 # 834 # 1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.262 1_4 - 198 TrmB PF01978.14 68 4.3e-07 21.1 0.0 1 1 1.1e-07 1e-06 19.9 0.0 23 49 161 187 145 189 0.83 # 3584 # 4177 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 1_7 - 105 TrmB PF01978.14 68 3.4e-06 18.2 0.0 1 1 6.3e-07 5.7e-06 17.5 0.0 16 63 23 71 22 75 0.92 # 6403 # 6717 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_6 - 253 TrmB PF01978.14 68 0.00014 13.1 0.2 1 1 4.7e-05 0.00042 11.5 0.2 19 42 225 248 216 251 0.81 # 5584 # 6342 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_23 - 80 HTH_26 PF13443.1 63 5.5e-08 24.5 0.0 1 1 1.7e-09 6.3e-08 24.3 0.0 9 58 14 62 2 66 0.88 # 14830 # 15069 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.304 1_8 - 191 Na_sulph_symp PF00939.14 471 5.3e-11 33.4 20.5 1 1 1.7e-12 6e-11 33.2 20.5 271 418 4 148 1 186 0.77 # 6717 # 7289 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_19 - 131 ABC_tran PF00005.22 137 1.1e-16 52.9 0.1 1 1 4.6e-18 1.7e-16 52.3 0.1 65 136 2 81 1 82 0.86 # 11677 # 12069 # 1 # ID=1_19;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_2 - 600 Peptidase_M48 PF01435.13 226 9.2e-05 13.5 0.0 1 1 5.8e-06 0.00021 12.3 0.0 63 129 186 249 126 290 0.75 # 1151 # 2950 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.259 1_19 - 131 SMC_N PF02463.14 220 2.1e-07 21.8 0.9 1 1 6.8e-09 2.4e-07 21.6 0.9 123 213 34 127 4 130 0.69 # 11677 # 12069 # 1 # ID=1_19;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_4 - 198 Trp_repressor PF01371.14 88 3.7e-05 15.1 0.6 1 1 1.3e-05 0.00023 12.6 0.0 39 80 150 191 144 196 0.89 # 3584 # 4177 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 1_6 - 253 Trp_repressor PF01371.14 88 8.9e-05 13.9 0.4 1 1 1.5e-05 0.00028 12.3 0.4 39 72 219 251 213 251 0.93 # 5584 # 6342 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_6 - 253 RuvB_N PF05496.7 234 0.00011 12.7 0.2 1 2 0.023 0.83 0.0 0.0 55 65 32 42 28 51 0.86 # 5584 # 6342 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_6 - 253 RuvB_N PF05496.7 234 0.00011 12.7 0.2 2 2 1.9e-05 0.0007 10.1 0.1 79 136 86 145 66 178 0.89 # 5584 # 6342 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_26 - 328 RepA_N PF06970.6 76 4.9e-36 113.9 3.5 1 1 3.5e-37 1.2e-35 112.6 3.5 1 76 14 89 14 89 0.98 # 17200 # 18183 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.282 1_5 - 481 LZ_Tnp_IS481 PF13011.1 85 7.9e-05 14.5 0.0 1 1 4.7e-06 0.00017 13.4 0.0 26 59 34 67 23 89 0.84 # 4149 # 5591 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.318 1_5 - 481 HTH_32 PF13565.1 77 2e-06 20.1 0.0 1 1 3.3e-07 6e-06 18.5 0.0 1 63 49 110 49 126 0.74 # 4149 # 5591 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.318 1_4 - 198 HTH_32 PF13565.1 77 2.8e-05 16.4 0.2 1 1 3.3e-06 6e-05 15.3 0.2 19 77 131 181 118 181 0.80 # 3584 # 4177 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/f6729399-31ea-449b-b9a0-16a75b022b76 # Target file: checkm_output/bins/pGCA_001640905.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001640905.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f6729399-31ea-449b-b9a0-16a75b022b76 checkm_output/bins/pGCA_001640905.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Staphylococcus/training_20210111 # Date: Mon Jan 11 14:53:53 2021 # [ok]