# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_3 - 163 RepL PF05732.6 165 5.4e-61 194.1 4.3 1 1 7.3e-62 6.6e-61 193.8 4.3 2 148 3 149 2 160 0.96 # 1052 # 1540 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.319 1_3 - 163 MarR_2 PF12802.2 62 1.3e-06 17.6 0.0 1 1 2.4e-07 2.2e-06 16.9 0.0 10 56 65 112 63 113 0.92 # 1052 # 1540 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.319 1_3 - 163 HTH_Crp_2 PF13545.1 76 7e-07 18.6 0.0 1 1 1.3e-07 1.1e-06 17.9 0.0 27 67 76 116 60 122 0.84 # 1052 # 1540 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.319 1_3 - 163 B-block_TFIIIC PF04182.7 75 6e-05 12.5 0.0 1 1 1.5e-05 0.00013 11.3 0.0 20 53 79 112 78 149 0.76 # 1052 # 1540 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.319 1_3 - 163 MarR PF01047.17 59 2.3e-06 16.9 0.1 1 1 4.3e-07 3.8e-06 16.1 0.1 19 50 79 110 66 112 0.89 # 1052 # 1540 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.319 1_3 - 163 HTH_20 PF12840.2 61 3.4e-05 13.2 0.0 1 1 6.5e-06 5.8e-05 12.4 0.0 26 58 79 111 77 112 0.93 # 1052 # 1540 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.319 1_3 - 163 HTH_24 PF13412.1 48 5.7e-07 18.5 0.0 1 1 1.4e-07 1.3e-06 17.4 0.0 18 48 78 108 70 108 0.93 # 1052 # 1540 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.319 1_3 - 163 GntR PF00392.16 64 7.9e-06 14.9 0.0 1 1 1.7e-06 1.5e-05 14.0 0.0 26 59 79 112 60 114 0.88 # 1052 # 1540 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.319 1_1 - 84 BioY PF02632.9 149 3.6e-05 13.0 4.3 1 1 4.9e-06 4.4e-05 12.7 4.3 63 139 5 71 3 81 0.82 # 1 # 252 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.214 1_3 - 163 Fe_dep_repress PF01325.14 60 5e-06 16.0 0.2 1 1 1.5e-06 1.3e-05 14.6 0.0 9 48 64 103 60 109 0.88 # 1052 # 1540 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.319 1_3 - 163 TrmB PF01978.14 68 7.9e-06 15.1 0.2 1 1 2.9e-06 2.6e-05 13.5 0.0 23 57 78 112 74 120 0.93 # 1052 # 1540 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.319 1_3 - 163 Rrf2 PF02082.15 83 9.4e-07 18.5 0.0 1 1 2.1e-07 1.8e-06 17.6 0.0 15 61 67 113 56 117 0.84 # 1052 # 1540 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.319 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/b9b807ef-509b-432c-ac3d-4d3d98620623 # Target file: checkm_output/bins/pGCA_001618305.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001618305.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b9b807ef-509b-432c-ac3d-4d3d98620623 checkm_output/bins/pGCA_001618305.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Staphylococcus/training_20210111 # Date: Mon Jan 11 14:53:50 2021 # [ok]