# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_7 - 204 GerE PF00196.14 58 3.1e-05 13.0 0.1 1 1 6.7e-06 6.7e-05 11.9 0.1 11 35 168 192 166 196 0.94 # 6806 # 7417 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_4 - 554 Peptidase_M56 PF05569.6 299 3.2e-89 288.4 12.1 1 1 6.9e-90 6.9e-89 287.3 12.1 32 299 2 266 1 266 0.99 # 3807 # 5468 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.265 1_6 - 193 MarR_2 PF12802.2 62 3.5e-06 16.4 0.0 1 2 0.0047 0.047 3.2 0.1 23 45 112 134 78 137 0.90 # 6102 # 6680 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_6 - 193 MarR_2 PF12802.2 62 3.5e-06 16.4 0.0 2 2 1.7e-05 0.00017 11.0 0.0 7 45 149 184 144 187 0.90 # 6102 # 6680 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_6 - 193 Sigma70_r4_2 PF08281.7 54 3.6e-05 12.9 0.0 1 1 6.1e-06 6.1e-05 12.2 0.0 10 49 144 183 143 184 0.88 # 6102 # 6680 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_6 - 193 Mga PF05043.8 87 6.3e-08 22.6 0.5 1 2 0.007 0.07 3.2 0.1 24 52 104 132 74 137 0.83 # 6102 # 6680 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_6 - 193 Mga PF05043.8 87 6.3e-08 22.6 0.5 2 2 2.8e-07 2.8e-06 17.3 0.0 16 56 147 186 143 187 0.94 # 6102 # 6680 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_6 - 193 HTH_30 PF13556.1 59 6.5e-05 12.2 0.1 1 1 1.3e-05 0.00013 11.3 0.1 3 37 151 185 150 190 0.93 # 6102 # 6680 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_6 - 193 Mor PF08765.6 108 7.4e-05 12.2 0.1 1 1 1.5e-05 0.00015 11.3 0.1 71 102 159 190 121 192 0.83 # 6102 # 6680 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_6 - 193 HTH_22 PF13309.1 64 1.1e-08 24.5 0.4 1 2 0.084 0.42 0.2 0.0 23 38 70 85 64 85 0.85 # 6102 # 6680 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_6 - 193 HTH_22 PF13309.1 64 1.1e-08 24.5 0.4 2 2 4.8e-08 2.4e-07 20.2 0.1 12 64 136 182 128 182 0.82 # 6102 # 6680 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_7 - 204 HTH_22 PF13309.1 64 1.1e-07 21.2 1.8 1 2 0.0018 0.009 5.5 0.2 3 41 109 147 107 149 0.93 # 6806 # 7417 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_7 - 204 HTH_22 PF13309.1 64 1.1e-07 21.2 1.8 2 2 5.5e-06 2.8e-05 13.6 0.0 43 61 176 194 171 195 0.94 # 6806 # 7417 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_1 - 391 MULE PF10551.4 93 1.1e-22 69.7 0.1 1 1 3.7e-23 3.7e-22 68.1 0.0 15 92 182 262 169 263 0.86 # 29 # 1201 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.366 1_6 - 193 HTH_36 PF13730.1 55 6.3e-05 12.8 0.1 1 1 1.2e-05 0.00012 11.9 0.1 28 49 163 184 145 186 0.93 # 6102 # 6680 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_5 - 127 Penicillinase_R PF03965.11 115 1.1e-37 118.3 1.0 1 1 1.3e-38 1.3e-37 118.2 1.0 1 114 8 121 8 122 0.99 # 5458 # 5838 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.260 1_6 - 193 HTH_29 PF13551.1 112 3.3e-07 20.2 0.6 1 2 0.018 0.091 2.7 0.2 32 69 121 156 118 159 0.73 # 6102 # 6680 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_6 - 193 HTH_29 PF13551.1 112 3.3e-07 20.2 0.6 2 2 1.1e-06 5.7e-06 16.2 0.0 7 39 156 187 151 190 0.91 # 6102 # 6680 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_7 - 204 HTH_29 PF13551.1 112 4.2e-07 19.8 0.2 1 1 5.8e-07 2.9e-06 17.1 0.0 4 34 168 197 166 201 0.91 # 6806 # 7417 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_5 - 127 MarR PF01047.17 59 1.1e-08 24.4 0.1 1 1 3.8e-09 1.9e-08 23.7 0.1 1 54 8 65 8 65 0.96 # 5458 # 5838 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.260 1_6 - 193 MarR PF01047.17 59 5.5e-05 12.6 0.1 1 1 3e-05 0.00015 11.2 0.0 1 41 145 184 145 188 0.89 # 6102 # 6680 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_6 - 193 RuvB_C PF05491.8 76 7e-05 12.2 0.4 1 2 0.038 0.38 0.2 0.1 55 67 121 133 117 139 0.82 # 6102 # 6680 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_6 - 193 RuvB_C PF05491.8 76 7e-05 12.2 0.4 2 2 8.6e-05 0.00086 8.7 0.0 6 43 145 178 142 182 0.86 # 6102 # 6680 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_6 - 193 Terminase_5 PF06056.7 58 3.2e-05 13.2 0.1 1 1 6.2e-06 6.2e-05 12.3 0.1 7 36 154 183 153 189 0.92 # 6102 # 6680 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_6 - 193 HTH_24 PF13412.1 48 5.9e-11 31.4 0.3 1 1 1e-11 1e-10 30.6 0.3 1 41 145 184 145 188 0.96 # 6102 # 6680 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_6 - 193 HTH_AsnC-type PF13404.1 42 1.8e-05 14.0 0.0 1 1 3.8e-06 3.8e-05 12.9 0.0 3 41 147 184 145 185 0.90 # 6102 # 6680 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_1 - 391 DDE_Tnp_IS240 PF13610.1 140 2.8e-07 20.3 0.2 1 2 0.002 0.02 4.6 0.0 25 117 193 285 166 299 0.72 # 29 # 1201 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.366 1_1 - 391 DDE_Tnp_IS240 PF13610.1 140 2.8e-07 20.3 0.2 2 2 5.3e-06 5.3e-05 12.9 0.1 70 127 307 368 290 373 0.71 # 29 # 1201 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.366 1_6 - 193 HTH_IclR PF09339.5 52 2.5e-05 13.5 0.0 1 1 6.6e-06 6.6e-05 12.2 0.0 7 43 151 185 150 188 0.85 # 6102 # 6680 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_8 - 286 DUF2422 PF10337.4 459 7.7e-05 11.2 1.7 1 1 1.5e-05 0.00015 10.2 1.7 158 208 76 127 59 128 0.91 # 7567 # 8424 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.301 1_7 - 204 HTH_7 PF02796.10 45 1e-23 72.7 1.2 1 1 3.1e-24 1.5e-23 72.1 0.2 1 45 147 199 147 199 0.96 # 6806 # 7417 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_6 - 193 HTH_7 PF02796.10 45 2.3e-20 62.0 0.2 1 1 9.9e-21 4.9e-20 60.9 0.2 1 43 140 182 140 184 0.98 # 6102 # 6680 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_6 - 193 HTH_DeoR PF08220.7 57 3e-05 13.3 0.0 1 1 6.8e-06 6.8e-05 12.1 0.0 16 41 162 187 149 189 0.83 # 6102 # 6680 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_6 - 193 Phage_antitermQ PF06530.7 126 5.6e-05 12.4 0.0 1 2 0.011 0.11 1.7 0.0 48 95 55 101 23 113 0.73 # 6102 # 6680 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_6 - 193 Phage_antitermQ PF06530.7 126 5.6e-05 12.4 0.0 2 2 9.1e-05 0.00091 8.5 0.0 62 101 144 183 141 189 0.90 # 6102 # 6680 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_7 - 204 HTH_23 PF13384.1 50 2.9e-10 29.3 0.3 1 1 1.3e-10 6.7e-10 28.2 0.0 4 39 162 197 159 201 0.89 # 6806 # 7417 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_6 - 193 HTH_23 PF13384.1 50 3.5e-09 25.9 0.0 1 1 1.6e-09 7.8e-09 24.8 0.0 13 42 156 185 150 190 0.86 # 6102 # 6680 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_1 - 391 Transposase_mut PF00872.13 381 6.1e-157 511.6 4.0 1 1 6.9e-158 6.9e-157 511.4 4.0 1 380 1 380 1 381 0.99 # 29 # 1201 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.366 1_6 - 193 UPF0122 PF04297.9 101 2e-05 14.3 0.1 1 1 5.8e-06 5.8e-05 12.8 0.0 19 59 146 186 142 190 0.86 # 6102 # 6680 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_5 - 127 S-AdoMet_synt_M PF02772.11 120 7.1e-05 12.5 1.9 1 2 1.6e-05 0.00016 11.3 0.9 65 106 22 62 3 74 0.77 # 5458 # 5838 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.260 1_5 - 127 S-AdoMet_synt_M PF02772.11 120 7.1e-05 12.5 1.9 2 2 0.043 0.43 0.3 0.0 63 90 88 115 69 126 0.62 # 5458 # 5838 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.260 1_10 - 175 TIGR02168 TIGR02168 1181 0.00062 6.7 26.4 1 1 7.5e-05 0.00075 6.5 26.4 295 431 13 145 2 162 0.71 # 10276 # 10800 # -1 # ID=1_10;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.295 1_6 - 193 HTH_11 PF08279.7 55 1.4e-09 27.3 0.1 1 1 6.7e-10 3.3e-09 26.0 0.1 4 41 151 186 147 189 0.81 # 6102 # 6680 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_7 - 204 HTH_11 PF08279.7 55 2.3e-05 13.7 0.1 1 1 1.7e-05 8.6e-05 11.9 0.1 18 34 178 194 166 195 0.77 # 6806 # 7417 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_7 - 204 HTH_28 PF13518.1 52 1.8e-09 27.3 0.0 1 1 8.3e-10 4.2e-09 26.1 0.0 4 34 167 197 166 200 0.94 # 6806 # 7417 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_6 - 193 HTH_28 PF13518.1 52 2.2e-06 17.3 0.0 1 1 1.1e-06 5.3e-06 16.1 0.0 8 38 156 186 152 189 0.93 # 6102 # 6680 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_7 - 204 CENP-B_N PF04218.8 53 4.2e-09 25.5 2.1 1 2 0.00038 0.0038 6.4 0.3 13 35 117 139 115 142 0.85 # 6806 # 7417 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_7 - 204 CENP-B_N PF04218.8 53 4.2e-09 25.5 2.1 2 2 6.3e-08 6.3e-07 18.5 0.1 14 49 167 202 166 203 0.90 # 6806 # 7417 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_10 - 175 Glu_synthase PF01645.12 368 0.0011 7.5 6.3 1 1 2.7e-05 0.00027 9.5 3.2 7 71 25 88 18 92 0.84 # 10276 # 10800 # -1 # ID=1_10;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.295 1_10 - 175 DUF87 PF01935.12 229 0.047 3.1 13.0 1 2 0.005 0.05 3.0 11.2 111 195 5 95 2 115 0.75 # 10276 # 10800 # -1 # ID=1_10;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.295 1_10 - 175 DUF87 PF01935.12 229 0.047 3.1 13.0 2 2 0.018 0.18 1.1 0.2 76 105 92 129 83 159 0.68 # 10276 # 10800 # -1 # ID=1_10;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.295 1_6 - 193 TetR_N PF00440.18 47 4.3e-05 12.9 0.1 1 1 1.7e-05 0.00017 11.0 0.0 16 36 160 180 158 180 0.92 # 6102 # 6680 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_1 - 391 rve PF00665.21 120 0.00024 10.9 3.7 1 2 0.052 0.52 0.1 0.3 96 115 52 71 49 72 0.86 # 29 # 1201 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.366 1_1 - 391 rve PF00665.21 120 0.00024 10.9 3.7 2 2 3.2e-05 0.00032 10.5 0.0 11 83 166 245 158 269 0.78 # 29 # 1201 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.366 1_6 - 193 HTH_Mga PF08280.6 59 8.2e-05 12.1 1.2 1 1 2.1e-05 0.00021 10.8 0.3 2 44 144 185 143 187 0.91 # 6102 # 6680 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_6 - 193 HTH_38 PF13936.1 44 1.7e-07 20.5 0.0 1 1 8e-08 4e-07 19.3 0.0 13 43 153 183 143 184 0.87 # 6102 # 6680 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_7 - 204 HTH_38 PF13936.1 44 7.3e-07 18.4 1.7 1 1 2.8e-07 1.4e-06 17.5 0.1 15 39 170 194 160 198 0.93 # 6806 # 7417 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_7 - 204 Sigma70_r4 PF04545.11 50 6.3e-06 15.2 0.1 1 1 1.3e-06 1.3e-05 14.2 0.1 9 42 160 197 157 198 0.94 # 6806 # 7417 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_5 - 127 HTH_27 PF13463.1 68 6.3e-05 13.0 0.0 1 2 4e-05 0.0004 10.4 0.0 4 54 11 64 8 70 0.92 # 5458 # 5838 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.260 1_5 - 127 HTH_27 PF13463.1 68 6.3e-05 13.0 0.0 2 2 0.058 0.58 0.3 0.0 6 29 97 121 94 121 0.83 # 5458 # 5838 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.260 1_4 - 554 SprT-like PF10263.4 157 1.1e-05 14.8 0.0 1 1 2.6e-06 2.6e-05 13.6 0.0 7 71 113 174 108 177 0.85 # 3807 # 5468 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.265 1_6 - 193 HTH_Tnp_IS630 PF01710.11 120 1.4e-05 14.4 0.0 1 1 5.2e-06 2.6e-05 13.6 0.0 17 48 159 190 137 192 0.86 # 6102 # 6680 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_7 - 204 HTH_Tnp_IS630 PF01710.11 120 2.7e-05 13.6 0.1 1 1 1.4e-05 7e-05 12.2 0.1 9 37 166 194 162 201 0.91 # 6806 # 7417 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_6 - 193 HTH_40 PF14493.1 91 7.7e-06 15.8 0.0 1 1 3.3e-06 1.6e-05 14.8 0.0 8 42 155 189 153 191 0.90 # 6102 # 6680 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_7 - 204 HTH_40 PF14493.1 91 1.3e-05 15.1 0.1 1 1 7e-06 3.5e-05 13.7 0.1 7 31 169 193 165 195 0.92 # 6806 # 7417 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_1 - 391 DDE_Tnp_IS66 PF03050.9 271 4.9e-10 28.6 0.0 1 1 8.6e-11 8.6e-10 27.8 0.0 10 234 104 357 96 362 0.79 # 29 # 1201 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.366 1_6 - 193 TrmB PF01978.14 68 5.1e-07 19.1 0.0 1 1 2.5e-07 1.2e-06 17.9 0.0 8 48 147 186 144 188 0.77 # 6102 # 6680 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_7 - 204 TrmB PF01978.14 68 9.3e-05 11.9 0.8 1 1 4.9e-05 0.00025 10.5 0.2 19 42 172 195 163 196 0.83 # 6806 # 7417 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_9 - 360 G_glu_transpept PF01019.16 510 5.1e-56 179.7 0.2 1 1 6.6e-57 6.6e-56 179.3 0.2 142 494 23 342 10 356 0.86 # 8673 # 9752 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_4 - 554 Peptidase_M48 PF01435.13 226 2e-05 13.9 0.1 1 1 5.7e-06 5.7e-05 12.4 0.1 63 129 140 203 80 237 0.76 # 3807 # 5468 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.265 1_6 - 193 Trp_repressor PF01371.14 88 3e-06 16.9 0.7 1 2 0.057 0.57 -0.1 0.1 3 33 87 117 85 124 0.83 # 6102 # 6680 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_6 - 193 Trp_repressor PF01371.14 88 3e-06 16.9 0.7 2 2 2.8e-06 2.8e-05 13.7 0.1 39 79 150 190 146 192 0.89 # 6102 # 6680 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_6 - 193 HTH_32 PF13565.1 77 1.7e-06 18.5 0.3 1 1 3.4e-07 3.4e-06 17.5 0.3 19 77 131 181 118 181 0.80 # 6102 # 6680 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/51ebc71f-7dee-4b7e-9931-391fb45c71ee # Target file: checkm_output/bins/pGCA_001611955.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001611955.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/51ebc71f-7dee-4b7e-9931-391fb45c71ee checkm_output/bins/pGCA_001611955.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Staphylococcus/training_20210111 # Date: Mon Jan 11 14:53:49 2021 # [ok]