# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_4 - 209 DUF258 PF03193.11 161 1.1e-09 28.2 0.1 1 1 1.1e-10 2e-09 27.4 0.1 13 67 4 59 1 69 0.87 # 2589 # 3215 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_1 - 248 GerE PF00196.14 58 2.1e-06 17.6 1.1 1 2 0.00016 0.0031 7.5 0.1 19 42 2 25 2 27 0.90 # 419 # 1162 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.293 1_1 - 248 GerE PF00196.14 58 2.1e-06 17.6 1.1 2 2 6.9e-05 0.0013 8.7 0.1 21 45 97 121 93 133 0.87 # 419 # 1162 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.293 1_4 - 209 TIGR00157 TIGR00157 247 6.2e-05 12.8 0.1 1 1 5.1e-06 9.7e-05 12.2 0.1 123 144 28 49 3 67 0.76 # 2589 # 3215 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_9 - 554 Peptidase_M56 PF05569.6 299 6e-89 288.4 12.1 1 1 6.9e-90 1.3e-88 287.3 12.1 32 299 2 266 1 266 0.99 # 7279 # 8940 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.265 1_4 - 209 TIGR01978 TIGR01978 243 5e-24 75.2 4.2 1 1 1e-24 1.9e-23 73.3 4.2 2 208 3 195 2 201 0.81 # 2589 # 3215 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_4 - 209 KaiC PF06745.8 227 4.9e-05 13.0 0.4 1 1 4e-06 7.6e-05 12.4 0.3 16 141 24 148 14 166 0.80 # 2589 # 3215 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_3 - 78 Phage_CI_repr PF07022.8 66 8.1e-07 19.7 0.0 1 1 5.2e-08 9.8e-07 19.5 0.0 14 62 17 65 5 67 0.84 # 2174 # 2407 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 1_4 - 209 AAA_18 PF13238.1 129 0.00025 12.0 4.6 1 1 5.7e-05 0.0011 9.9 4.6 3 64 32 120 31 203 0.64 # 2589 # 3215 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_4 - 209 AAA_13 PF13166.1 712 9.3e-08 21.4 4.4 1 2 0.00018 0.0033 6.3 1.5 23 76 34 84 13 126 0.63 # 2589 # 3215 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_4 - 209 AAA_13 PF13166.1 712 9.3e-08 21.4 4.4 2 2 2.5e-07 4.8e-06 15.7 0.7 499 578 130 198 99 205 0.82 # 2589 # 3215 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_11 - 198 MarR_2 PF12802.2 62 2.2e-07 21.1 0.0 1 2 0.0059 0.11 2.8 0.1 23 45 112 134 101 137 0.86 # 9574 # 10167 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_11 - 198 MarR_2 PF12802.2 62 2.2e-07 21.1 0.0 2 2 5.2e-07 9.9e-06 15.8 0.0 7 48 149 187 144 188 0.91 # 9574 # 10167 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_4 - 209 TIGR03598 TIGR03598 186 1.9e-05 14.7 0.8 1 1 1.4e-06 2.7e-05 14.1 0.1 16 44 25 53 16 58 0.83 # 2589 # 3215 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_11 - 198 HTH_Crp_2 PF13545.1 76 0.00014 12.3 0.0 1 1 2e-05 0.00037 10.9 0.0 24 54 156 186 146 188 0.89 # 9574 # 10167 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_4 - 209 Zeta_toxin PF06414.7 201 2.5e-05 14.0 0.0 1 1 1.9e-06 3.6e-05 13.5 0.0 14 62 25 74 15 97 0.82 # 2589 # 3215 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_13 - 272 AAA_22 PF13401.1 131 2.1e-28 89.6 0.0 1 1 3.9e-29 3.7e-28 88.9 0.0 2 131 25 171 24 171 0.87 # 11574 # 12389 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.305 1_4 - 209 AAA_22 PF13401.1 131 1.1e-06 19.4 1.0 1 1 3.5e-07 3.3e-06 17.9 1.0 4 122 27 188 24 197 0.70 # 2589 # 3215 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_3 - 78 HTH_19 PF12844.2 64 3.5e-17 52.9 0.0 1 1 2.1e-18 4e-17 52.7 0.0 2 61 5 64 4 66 0.96 # 2174 # 2407 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 1_3 - 78 Sigma70_r4_2 PF08281.7 54 0.00016 11.7 0.0 1 1 1.7e-05 0.00033 10.8 0.0 22 45 11 34 9 35 0.91 # 2174 # 2407 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 1_11 - 198 Mga PF05043.8 87 4e-07 20.9 0.4 1 2 0.0074 0.14 3.1 0.1 24 52 104 132 74 137 0.83 # 9574 # 10167 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_11 - 198 Mga PF05043.8 87 4e-07 20.9 0.4 2 2 9.3e-07 1.8e-05 15.6 0.0 16 55 147 185 143 187 0.93 # 9574 # 10167 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_11 - 198 HTH_30 PF13556.1 59 5.7e-05 13.3 0.0 1 1 6.2e-06 0.00012 12.3 0.0 3 38 151 186 150 187 0.94 # 9574 # 10167 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_4 - 209 AAA_23 PF13476.1 202 0.00012 12.9 10.4 1 1 4e-05 0.00076 10.4 10.4 10 130 17 137 9 195 0.58 # 2589 # 3215 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_3 - 78 HTH_31 PF13560.1 64 4.6e-13 39.8 0.0 1 1 2.9e-14 5.5e-13 39.6 0.0 2 59 3 59 2 62 0.95 # 2174 # 2407 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 1_11 - 198 HTH_22 PF13309.1 64 2.1e-08 24.5 0.2 1 2 0.026 0.25 1.8 0.0 23 38 70 85 64 86 0.87 # 9574 # 10167 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_11 - 198 HTH_22 PF13309.1 64 2.1e-08 24.5 0.2 2 2 1.3e-07 1.2e-06 18.8 0.1 13 64 137 182 128 182 0.79 # 9574 # 10167 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_1 - 248 HTH_22 PF13309.1 64 2.5e-05 14.6 1.1 1 1 1e-05 9.9e-05 12.7 0.0 43 64 2 23 1 23 0.92 # 419 # 1162 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.293 1_14 - 256 Reprolysin_4 PF13583.1 206 8.8e-05 12.6 0.8 1 1 8.9e-06 0.00017 11.7 0.8 31 117 117 216 105 244 0.85 # 12478 # 13245 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.242 1_3 - 78 HTH_37 PF13744.1 80 2.6e-08 24.2 0.3 1 1 1.9e-09 3.7e-08 23.8 0.3 18 65 2 48 1 63 0.82 # 2174 # 2407 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 1_11 - 198 HTH_36 PF13730.1 55 4.3e-06 17.4 0.1 1 1 9.6e-07 9.1e-06 16.4 0.1 28 52 163 187 145 188 0.93 # 9574 # 10167 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_19 - 322 HTH_36 PF13730.1 55 3.1e-05 14.7 0.6 1 1 8.1e-06 7.7e-05 13.4 0.6 2 55 28 92 27 92 0.75 # 16326 # 17291 # -1 # ID=1_19;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.281 1_10 - 127 Penicillinase_R PF03965.11 115 2.1e-37 118.3 1.0 1 1 1.3e-38 2.4e-37 118.2 1.0 1 114 8 121 8 122 0.99 # 8930 # 9310 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.260 1_4 - 209 AAA_17 PF13207.1 121 4.9e-06 18.0 0.3 1 1 8.2e-07 1.6e-05 16.4 0.3 3 58 31 88 30 207 0.73 # 2589 # 3215 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_15 - 116 HTH_34 PF13601.1 80 6.9e-05 13.5 0.2 1 1 5.4e-06 0.0001 12.9 0.2 2 49 44 91 43 96 0.93 # 13698 # 14045 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.259 1_12 - 481 HTH_29 PF13551.1 112 2.2e-08 24.9 0.0 1 1 7.4e-09 7e-08 23.2 0.0 15 96 36 115 30 129 0.83 # 10139 # 11581 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.310 1_11 - 198 HTH_29 PF13551.1 112 6.7e-07 20.1 0.6 1 2 0.026 0.24 2.2 0.2 32 67 121 154 118 158 0.72 # 9574 # 10167 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_11 - 198 HTH_29 PF13551.1 112 6.7e-07 20.1 0.6 2 2 2.5e-06 2.4e-05 15.1 0.0 7 39 156 187 155 192 0.89 # 9574 # 10167 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_10 - 127 MarR PF01047.17 59 2.1e-08 24.4 0.1 1 1 3.8e-09 3.6e-08 23.7 0.1 1 54 8 65 8 65 0.96 # 8930 # 9310 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.260 1_11 - 198 MarR PF01047.17 59 1.6e-06 18.4 0.1 1 1 4.3e-07 4.1e-06 17.1 0.0 2 45 146 188 145 188 0.89 # 9574 # 10167 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_15 - 116 HTH_20 PF12840.2 61 1.2e-05 15.7 0.0 1 1 1.5e-06 1.5e-05 15.4 0.0 15 57 48 89 34 93 0.87 # 13698 # 14045 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.259 1_11 - 198 HTH_20 PF12840.2 61 6e-05 13.5 0.0 1 1 3.3e-05 0.00032 11.1 0.0 15 50 152 186 145 189 0.90 # 9574 # 10167 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_15 - 116 HTH_5 PF01022.15 47 7.4e-18 54.6 1.6 1 1 6.8e-19 1.3e-17 53.9 1.6 1 45 41 86 41 88 0.95 # 13698 # 14045 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.259 1_11 - 198 Terminase_5 PF06056.7 58 4.9e-05 13.5 0.1 1 1 4.8e-06 9.1e-05 12.6 0.1 7 36 154 183 153 194 0.88 # 9574 # 10167 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_11 - 198 HTH_24 PF13412.1 48 3.2e-11 33.1 0.2 1 1 3.1e-12 5.9e-11 32.3 0.2 1 44 145 187 145 188 0.97 # 9574 # 10167 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_4 - 209 AAA_21 PF13304.1 303 7.7e-17 52.6 5.3 1 1 3.3e-16 6.3e-15 46.4 5.3 3 301 31 193 29 195 0.94 # 2589 # 3215 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_11 - 198 HTH_IclR PF09339.5 52 1.3e-05 15.4 0.0 1 1 1.9e-06 3.7e-05 13.9 0.0 8 43 152 185 150 187 0.84 # 9574 # 10167 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_1 - 248 HTH_10 PF04967.7 53 8.6e-05 12.7 0.0 1 1 1e-05 0.00019 11.6 0.0 25 46 3 24 2 30 0.87 # 419 # 1162 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.293 1_11 - 198 HTH_7 PF02796.10 45 2.9e-21 65.7 0.1 1 1 3.4e-22 6.5e-21 64.6 0.1 1 44 140 183 140 184 0.98 # 9574 # 10167 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_4 - 209 SbcCD_C PF13558.1 90 1.1e-05 16.0 0.0 1 1 7.3e-06 0.00014 12.4 0.0 24 88 123 174 102 176 0.79 # 2589 # 3215 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_11 - 198 HTH_DeoR PF08220.7 57 3.5e-05 13.9 0.0 1 1 1.1e-05 0.0001 12.4 0.0 17 41 163 187 149 189 0.85 # 9574 # 10167 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_1 - 248 HTH_DeoR PF08220.7 57 0.00014 12.1 2.0 1 1 2.2e-05 0.00021 11.4 0.0 16 33 3 20 2 30 0.84 # 419 # 1162 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.293 1_11 - 198 Phage_antitermQ PF06530.7 126 0.00012 12.2 0.0 1 2 0.028 0.53 0.5 0.0 52 94 58 100 37 112 0.82 # 9574 # 10167 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_11 - 198 Phage_antitermQ PF06530.7 126 0.00012 12.2 0.0 2 2 5.1e-05 0.00097 9.3 0.0 62 103 144 185 141 191 0.90 # 9574 # 10167 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_14 - 256 AAA_14 PF13173.1 128 0.0014 9.1 7.7 1 1 4.4e-06 8.4e-05 13.1 1.4 27 91 64 135 51 174 0.77 # 12478 # 13245 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.242 1_13 - 272 AAA PF00004.24 132 3.7e-06 17.8 1.0 1 1 6e-06 0.00011 12.9 1.0 3 110 32 166 31 189 0.65 # 11574 # 12389 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.305 1_4 - 209 AAA_10 PF12846.2 304 2.9e-05 14.1 0.2 1 1 2.6e-06 5e-05 13.3 0.1 3 22 29 48 27 78 0.84 # 2589 # 3215 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_13 - 272 DEAD PF00270.24 169 0.00024 11.2 1.7 1 1 4.1e-05 0.00078 9.5 1.7 111 144 120 152 29 235 0.86 # 11574 # 12389 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.305 1_4 - 209 AAA_16 PF13191.1 185 3.7e-05 14.3 1.0 1 1 4.1e-06 7.8e-05 13.2 1.0 24 44 27 46 17 199 0.77 # 2589 # 3215 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_11 - 198 HTH_23 PF13384.1 50 1.9e-08 24.4 0.0 1 1 1e-08 4.8e-08 23.1 0.0 13 43 156 185 151 193 0.87 # 9574 # 10167 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_12 - 481 HTH_23 PF13384.1 50 1.6e-07 21.5 0.0 1 1 8.5e-08 4e-07 20.2 0.0 3 49 18 65 16 66 0.91 # 10139 # 11581 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.310 1_3 - 78 HTH_23 PF13384.1 50 1.7e-07 21.4 0.0 1 1 5.2e-08 2.5e-07 20.9 0.0 8 38 4 36 1 42 0.85 # 2174 # 2407 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 1_1 - 248 HTH_23 PF13384.1 50 3.8e-06 17.1 0.0 1 1 2.5e-06 1.2e-05 15.5 0.0 18 42 2 26 2 32 0.89 # 419 # 1162 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.293 1_3 - 78 Sigma70_ECF PF07638.6 185 8.6e-05 12.8 0.0 1 1 5.6e-06 0.00011 12.5 0.0 145 172 9 35 2 42 0.86 # 2174 # 2407 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 1_11 - 198 UPF0122 PF04297.9 101 2.3e-05 15.0 0.1 1 1 3.4e-06 6.4e-05 13.6 0.1 19 59 146 186 142 190 0.88 # 9574 # 10167 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_10 - 127 S-AdoMet_synt_M PF02772.11 120 0.00013 12.5 1.9 1 2 1.6e-05 0.00031 11.3 0.9 65 106 22 62 3 74 0.77 # 8930 # 9310 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.260 1_10 - 127 S-AdoMet_synt_M PF02772.11 120 0.00013 12.5 1.9 2 2 0.043 0.81 0.3 0.0 63 90 88 115 69 126 0.62 # 8930 # 9310 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.260 1_1 - 248 TIGR02168 TIGR02168 1181 0.0013 6.6 33.8 1 1 8.2e-05 0.0016 6.4 33.8 239 452 28 235 2 240 0.67 # 419 # 1162 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.293 1_11 - 198 HTH_11 PF08279.7 55 5.7e-09 26.2 0.1 1 1 1.4e-09 1.3e-08 25.0 0.1 5 41 152 186 147 189 0.82 # 9574 # 10167 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_1 - 248 HTH_11 PF08279.7 55 9.3e-08 22.3 0.6 1 1 3.7e-08 3.5e-07 20.5 0.1 17 40 3 26 2 31 0.93 # 419 # 1162 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.293 1_3 - 78 P22_Cro PF14549.1 60 1.9e-05 15.0 0.1 1 1 1.8e-06 3.5e-05 14.1 0.1 11 30 17 36 16 44 0.87 # 2174 # 2407 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 1_12 - 481 HTH_28 PF13518.1 52 5.1e-12 36.3 0.0 1 1 3.7e-12 1.7e-11 34.6 0.0 1 49 21 70 21 74 0.93 # 10139 # 11581 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.310 1_3 - 78 HTH_28 PF13518.1 52 8.3e-06 16.4 0.2 1 1 3.3e-06 1.6e-05 15.5 0.2 11 32 14 35 3 38 0.83 # 2174 # 2407 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 1_11 - 198 HTH_28 PF13518.1 52 1.5e-05 15.6 0.0 1 1 8.2e-06 3.9e-05 14.3 0.0 8 37 156 185 155 190 0.92 # 9574 # 10167 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_1 - 248 HTH_28 PF13518.1 52 0.00014 12.5 0.0 1 1 6.6e-05 0.00031 11.4 0.0 14 37 3 26 1 30 0.91 # 419 # 1162 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.293 1_4 - 209 Dynamin_N PF00350.18 168 5e-05 13.7 2.6 1 1 7.1e-06 0.00014 12.3 2.6 2 35 31 64 31 196 0.64 # 2589 # 3215 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_11 - 198 HTH_Tnp_4 PF13613.1 53 1.9e-05 14.8 0.0 1 1 2.1e-06 4e-05 13.7 0.0 24 45 165 186 159 187 0.90 # 9574 # 10167 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_13 - 272 cobW PF02492.14 178 0.00017 11.7 0.2 1 1 2e-05 0.00038 10.5 0.1 126 171 102 156 63 162 0.72 # 11574 # 12389 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.305 1_4 - 209 MMR_HSR1 PF01926.18 116 2.8e-06 17.9 2.8 1 1 3e-07 5.7e-06 16.9 2.8 3 91 31 134 29 203 0.64 # 2589 # 3215 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_4 - 209 NTPase_1 PF03266.10 168 6.2e-05 13.3 0.3 1 2 0.0012 0.023 5.0 0.0 3 19 31 47 29 57 0.86 # 2589 # 3215 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_4 - 209 NTPase_1 PF03266.10 168 6.2e-05 13.3 0.3 2 2 0.00037 0.0071 6.6 0.2 80 135 134 191 104 207 0.74 # 2589 # 3215 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_16 - 206 Virul_fac_BrkB PF03631.10 260 0.00084 9.2 23.5 1 2 7.7e-06 0.00015 11.7 7.6 166 235 11 79 1 81 0.84 # 14064 # 14681 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.272 1_16 - 206 Virul_fac_BrkB PF03631.10 260 0.00084 9.2 23.5 2 2 0.0021 0.041 3.7 8.0 115 180 135 191 107 193 0.63 # 14064 # 14681 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.272 1_1 - 248 Glu_synthase PF01645.12 368 0.00063 9.2 5.4 1 2 0.069 1.3 -1.7 0.1 17 52 50 84 21 100 0.53 # 419 # 1162 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.293 1_1 - 248 Glu_synthase PF01645.12 368 0.00063 9.2 5.4 2 2 1.4e-05 0.00027 10.4 3.0 11 71 100 159 87 171 0.84 # 419 # 1162 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.293 1_4 - 209 AAA_15 PF13175.1 415 5.6e-09 26.0 9.2 1 2 7.5e-06 0.00014 11.4 5.9 8 91 12 87 4 110 0.60 # 2589 # 3215 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_4 - 209 AAA_15 PF13175.1 415 5.6e-09 26.0 9.2 2 2 5e-07 9.5e-06 15.3 3.3 285 411 82 190 62 194 0.67 # 2589 # 3215 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_4 - 209 FeoB_N PF02421.13 156 1e-05 15.4 3.7 1 2 4.3e-05 0.00082 9.2 0.0 3 24 30 51 28 57 0.89 # 2589 # 3215 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_4 - 209 FeoB_N PF02421.13 156 1e-05 15.4 3.7 2 2 0.00037 0.0071 6.2 1.3 85 131 161 207 129 208 0.78 # 2589 # 3215 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_12 - 481 rve_3 PF13683.1 67 2e-06 17.9 0.5 1 1 6.1e-07 1.2e-05 15.5 0.0 2 35 258 291 257 330 0.77 # 10139 # 11581 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.310 1_11 - 198 TetR_N PF00440.18 47 9.6e-05 12.6 0.1 1 1 2.1e-05 0.0004 10.6 0.0 16 36 160 180 158 180 0.92 # 9574 # 10167 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_12 - 481 rve PF00665.21 120 5.7e-28 88.1 0.0 1 1 5.7e-29 1.1e-27 87.1 0.0 2 119 156 285 155 286 0.89 # 10139 # 11581 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.310 1_3 - 78 HTH_25 PF13413.1 62 1.9e-05 14.9 0.1 1 1 1.5e-06 2.9e-05 14.3 0.1 3 28 8 33 6 41 0.87 # 2174 # 2407 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 1_12 - 481 HTH_Tnp_1 PF01527.15 76 1.3e-05 15.7 0.0 1 1 3e-06 2.8e-05 14.7 0.0 11 57 21 68 14 95 0.82 # 10139 # 11581 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.310 1_1 - 248 HTH_Tnp_1 PF01527.15 76 8.3e-05 13.1 0.8 1 2 0.0002 0.0019 8.8 0.0 24 50 2 29 1 57 0.71 # 419 # 1162 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.293 1_1 - 248 HTH_Tnp_1 PF01527.15 76 8.3e-05 13.1 0.8 2 2 0.031 0.29 1.8 0.7 36 74 107 146 102 148 0.77 # 419 # 1162 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.293 1_11 - 198 HTH_38 PF13936.1 44 1.6e-06 18.3 0.0 1 1 2.2e-07 4.1e-06 16.9 0.0 6 41 146 181 142 183 0.86 # 9574 # 10167 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_3 - 78 Sigma70_r4 PF04545.11 50 0.00014 11.8 0.0 1 1 1.2e-05 0.00022 11.1 0.0 15 41 10 36 5 38 0.87 # 2174 # 2407 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 1_10 - 127 HTH_27 PF13463.1 68 0.00012 13.0 0.0 1 2 4e-05 0.00075 10.4 0.0 4 54 11 64 8 70 0.92 # 8930 # 9310 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.260 1_10 - 127 HTH_27 PF13463.1 68 0.00012 13.0 0.0 2 2 0.058 1.1 0.3 0.0 6 29 97 121 94 121 0.83 # 8930 # 9310 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.260 1_9 - 554 SprT-like PF10263.4 157 2.1e-05 14.8 0.0 1 1 2.6e-06 5e-05 13.6 0.0 7 71 113 174 108 177 0.85 # 7279 # 8940 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.265 1_11 - 198 HTH_Tnp_IS630 PF01710.11 120 2.7e-05 14.4 0.0 1 1 3e-06 5.7e-05 13.4 0.0 17 46 159 188 147 196 0.80 # 9574 # 10167 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_16 - 206 Cad PF03596.8 191 1.1e-85 276.7 16.4 1 1 6.7e-87 1.3e-85 276.5 16.4 1 191 12 203 12 203 0.99 # 14064 # 14681 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.272 1_11 - 198 HTH_40 PF14493.1 91 1.9e-05 15.5 0.0 1 1 1.9e-06 3.7e-05 14.6 0.0 8 41 155 188 153 194 0.88 # 9574 # 10167 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_3 - 78 HTH_3 PF01381.17 55 4.2e-18 55.6 0.0 1 1 2.9e-19 5.5e-18 55.2 0.0 1 55 7 61 7 61 0.98 # 2174 # 2407 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 1_11 - 198 TrmB PF01978.14 68 2.3e-07 21.1 0.0 1 1 2.7e-08 5.2e-07 20.0 0.0 22 49 160 187 145 189 0.82 # 9574 # 10167 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_3 - 78 HTH_26 PF13443.1 63 2e-06 18.6 0.0 1 1 1.2e-07 2.3e-06 18.4 0.0 9 58 14 62 2 65 0.85 # 2174 # 2407 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 1_4 - 209 ABC_tran PF00005.22 137 8.7e-37 117.1 0.1 1 1 6.2e-38 1.2e-36 116.6 0.1 1 136 17 159 17 160 0.93 # 2589 # 3215 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_9 - 554 Peptidase_M48 PF01435.13 226 3.7e-05 13.9 0.1 1 1 5.7e-06 0.00011 12.4 0.1 63 129 140 203 80 237 0.76 # 7279 # 8940 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.265 1_4 - 209 SMC_N PF02463.14 220 6.4e-08 22.6 6.0 1 1 7.9e-09 1.5e-07 21.4 6.0 19 213 21 205 4 208 0.75 # 2589 # 3215 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_11 - 198 Trp_repressor PF01371.14 88 5e-06 17.0 0.4 1 2 0.059 1.1 -0.1 0.1 3 33 87 117 85 124 0.83 # 9574 # 10167 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_11 - 198 Trp_repressor PF01371.14 88 5e-06 17.0 0.4 2 2 2.1e-06 3.9e-05 14.2 0.0 39 80 150 191 146 196 0.89 # 9574 # 10167 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_4 - 209 AAA_29 PF13555.1 62 6.8e-08 22.6 0.1 1 1 6.5e-09 1.2e-07 21.8 0.1 13 40 18 44 12 48 0.84 # 2589 # 3215 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_19 - 322 RepA_N PF06970.6 76 2.5e-36 114.0 3.5 1 1 3.3e-37 6.4e-36 112.7 3.5 1 76 11 86 11 86 0.98 # 16326 # 17291 # -1 # ID=1_19;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.281 1_16 - 206 Sdh_cyt PF01127.17 121 0.00052 10.4 15.6 1 2 0.00031 0.0059 7.0 1.9 35 120 13 117 2 118 0.59 # 14064 # 14681 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.272 1_16 - 206 Sdh_cyt PF01127.17 121 0.00052 10.4 15.6 2 2 0.001 0.019 5.4 6.2 33 78 144 189 129 192 0.52 # 14064 # 14681 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.272 1_12 - 481 LZ_Tnp_IS481 PF13011.1 85 0.00011 13.2 0.0 1 1 1.3e-05 0.00024 12.1 0.0 24 59 32 67 22 77 0.88 # 10139 # 11581 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.310 1_12 - 481 HTH_32 PF13565.1 77 3.2e-07 21.7 0.0 1 1 8.1e-08 7.7e-07 20.5 0.0 1 76 49 125 49 126 0.83 # 10139 # 11581 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.310 1_11 - 198 HTH_32 PF13565.1 77 5.9e-06 17.7 0.2 1 1 1.4e-06 1.3e-05 16.5 0.2 19 77 131 181 118 181 0.80 # 9574 # 10167 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_6 - 645 MgtE PF01769.11 135 0.064 4.1 20.0 1 2 0.0023 0.045 4.6 6.1 35 107 195 261 183 264 0.88 # 3542 # 5476 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.264 1_6 - 645 MgtE PF01769.11 135 0.064 4.1 20.0 2 2 0.00097 0.018 5.9 4.0 45 104 539 598 522 604 0.85 # 3542 # 5476 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.264 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/c9ec941e-bf1b-4d1f-986c-292d2beee647 # Target file: checkm_output/bins/pGCA_001611365.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001611365.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c9ec941e-bf1b-4d1f-986c-292d2beee647 checkm_output/bins/pGCA_001611365.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Staphylococcus/training_20210111 # Date: Mon Jan 11 14:53:46 2021 # [ok]