# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_2 - 159 RepL PF05732.6 165 2.7e-73 233.3 4.8 1 1 6.2e-74 3.1e-73 233.1 4.8 1 148 1 148 1 156 0.98 # 432 # 908 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_1 - 274 TIGR00406 TIGR00406 288 7.4e-06 13.9 0.0 1 1 2.3e-06 1.2e-05 13.2 0.0 155 203 77 128 69 175 0.81 # 777 # 1598 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.252 1_1 - 274 Methyltransf_32 PF13679.1 141 1.1e-07 20.3 0.0 1 1 4.1e-08 2.1e-07 19.4 0.0 13 77 71 131 61 146 0.77 # 777 # 1598 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.252 1_1 - 274 Methyltransf_11 PF08241.7 95 5.5e-11 31.6 0.0 1 1 8.8e-11 2.2e-10 29.7 0.0 1 89 87 168 87 174 0.85 # 777 # 1598 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.252 2_3 - 245 Methyltransf_11 PF08241.7 95 2.8e-07 19.7 0.0 1 1 2.2e-07 5.5e-07 18.8 0.0 2 60 36 94 35 99 0.91 # 1356 # 2090 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 2_2 - 159 HTH_Crp_2 PF13545.1 76 1.1e-07 20.4 0.2 1 1 3.4e-08 1.7e-07 19.7 0.2 30 67 78 115 60 122 0.88 # 432 # 908 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_1 - 274 Methyltransf_4 PF02390.12 197 3.5e-08 21.3 3.6 1 2 5.8e-08 1.4e-07 19.3 0.2 17 78 79 147 56 158 0.77 # 777 # 1598 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.252 1_1 - 274 Methyltransf_4 PF02390.12 197 3.5e-08 21.3 3.6 2 2 0.004 0.01 3.6 0.4 112 160 153 226 152 258 0.63 # 777 # 1598 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.252 2_3 - 245 Methyltransf_4 PF02390.12 197 8.6e-07 16.8 0.3 1 1 3.4e-07 8.6e-07 16.8 0.3 20 97 31 101 4 104 0.77 # 1356 # 2090 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 1_1 - 274 Pox_MCEL PF03291.11 332 6.4e-07 17.1 6.8 1 2 1.9e-07 9.7e-07 16.5 2.7 13 110 29 131 17 136 0.69 # 777 # 1598 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.252 1_1 - 274 Pox_MCEL PF03291.11 332 6.4e-07 17.1 6.8 2 2 0.0033 0.017 2.6 0.1 175 220 164 209 160 246 0.71 # 777 # 1598 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.252 1_1 - 274 Methyltransf_31 PF13847.1 152 1.2e-14 42.9 1.2 1 1 9.1e-15 2.3e-14 41.9 1.2 2 120 81 184 80 237 0.73 # 777 # 1598 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.252 2_3 - 245 Methyltransf_31 PF13847.1 152 8.6e-07 17.3 2.8 1 1 5.9e-07 1.5e-06 16.6 2.6 2 76 29 98 28 225 0.74 # 1356 # 2090 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 2_2 - 159 FUR PF01475.14 120 1.3e-06 17.0 0.1 1 2 0.0067 0.033 2.8 0.0 78 102 12 36 2 50 0.71 # 432 # 908 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 2_2 - 159 FUR PF01475.14 120 1.3e-06 17.0 0.1 2 2 9e-06 4.5e-05 12.1 0.1 12 60 59 108 53 111 0.76 # 432 # 908 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_2 - 335 Ribosomal_L11 PF00298.14 69 4.4e-05 12.4 2.0 1 1 2.1e-05 0.0001 11.2 0.1 16 43 23 51 16 62 0.91 # 1781 # 2785 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.302 2_2 - 159 HTH_36 PF13730.1 55 2.7e-05 13.0 0.0 1 1 1e-05 5e-05 12.2 0.0 26 54 77 105 61 106 0.84 # 432 # 908 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 2_3 - 245 RrnaAD PF00398.15 262 2.1e-76 245.0 4.4 1 1 9.2e-77 2.3e-76 244.9 4.4 1 262 1 244 1 244 0.97 # 1356 # 2090 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 1_1 - 274 RrnaAD PF00398.15 262 2e-06 15.6 0.0 1 1 1.2e-06 3e-06 15.0 0.0 19 91 71 143 64 162 0.85 # 777 # 1598 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.252 2_3 - 245 MTS PF05175.9 170 1.6e-06 16.3 0.0 1 1 4.8e-07 2.4e-06 15.7 0.0 25 113 24 109 14 125 0.83 # 1356 # 2090 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 2_3 - 245 DOT1 PF08123.8 205 1.6e-06 16.2 1.3 1 2 1.9e-06 9.3e-06 13.7 0.0 29 91 17 77 13 116 0.83 # 1356 # 2090 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 2_3 - 245 DOT1 PF08123.8 205 1.6e-06 16.2 1.3 2 2 0.016 0.078 0.9 0.6 78 133 180 229 169 236 0.57 # 1356 # 2090 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 1_1 - 274 PrmA PF06325.8 295 2e-07 19.0 0.2 1 2 9.7e-08 4.8e-07 17.7 0.1 154 204 74 127 69 154 0.80 # 777 # 1598 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.252 1_1 - 274 PrmA PF06325.8 295 2e-07 19.0 0.2 2 2 0.097 0.48 -2.0 0.0 15 73 160 218 152 242 0.56 # 777 # 1598 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.252 1_1 - 274 CMAS PF02353.15 273 1.5e-05 12.8 0.0 1 1 4e-06 2e-05 12.4 0.0 41 109 61 131 21 166 0.87 # 777 # 1598 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.252 2_2 - 159 MarR PF01047.17 59 7.8e-06 14.3 0.3 1 1 2.7e-06 1.3e-05 13.6 0.3 19 50 78 109 64 111 0.86 # 432 # 908 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_1 - 274 Methyltransf_12 PF08242.7 99 8.6e-07 18.2 0.2 1 1 1.1e-06 2.8e-06 16.5 0.1 2 57 88 144 87 218 0.81 # 777 # 1598 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.252 2_3 - 245 Methyltransf_12 PF08242.7 99 3.6e-05 13.0 0.2 1 1 3.9e-05 9.7e-05 11.6 0.0 2 56 36 88 35 114 0.83 # 1356 # 2090 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 2_2 - 159 HTH_20 PF12840.2 61 3.7e-06 15.5 0.0 1 1 1.2e-06 5.9e-06 14.8 0.0 25 56 77 108 65 111 0.93 # 432 # 908 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 2_2 - 159 HTH_24 PF13412.1 48 1.5e-08 22.7 1.5 1 2 0.0059 0.029 2.6 0.0 5 21 57 73 55 77 0.89 # 432 # 908 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 2_2 - 159 HTH_24 PF13412.1 48 1.5e-08 22.7 1.5 2 2 4.1e-08 2.1e-07 19.1 0.4 18 48 77 107 76 107 0.96 # 432 # 908 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_1 - 274 GCD14 PF08704.5 247 2.8e-06 15.6 0.0 1 2 1.2e-05 5.9e-05 11.3 0.0 27 87 69 129 60 141 0.87 # 777 # 1598 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.252 1_1 - 274 GCD14 PF08704.5 247 2.8e-06 15.6 0.0 2 2 0.0083 0.042 1.9 0.1 158 190 205 237 198 268 0.69 # 777 # 1598 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.252 2_2 - 159 HTH_23 PF13384.1 50 3.3e-05 12.3 0.0 1 1 1.3e-05 6.5e-05 11.4 0.0 19 45 78 103 68 108 0.88 # 432 # 908 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_1 - 274 Ubie_methyltran PF01209.13 233 1.4e-06 16.2 0.3 1 1 6.3e-07 3.1e-06 15.1 0.1 39 122 74 152 58 176 0.80 # 777 # 1598 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.252 2_2 - 159 HTH_11 PF08279.7 55 1.8e-05 13.1 0.2 1 1 6.7e-06 3.4e-05 12.2 0.2 16 43 77 104 61 112 0.82 # 432 # 908 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 2_2 - 159 HTH_28 PF13518.1 52 4.6e-06 15.4 0.0 1 1 2.5e-06 1.3e-05 14.0 0.0 1 41 56 105 56 111 0.82 # 432 # 908 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_1 - 274 FtsJ PF01728.14 181 2.9e-05 12.8 0.1 1 1 1.2e-05 5.9e-05 11.8 0.1 8 89 70 170 68 266 0.70 # 777 # 1598 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.252 1_1 - 274 TIGR03534 TIGR03534 253 2e-07 19.0 0.0 1 1 5.9e-08 3e-07 18.5 0.0 76 147 67 137 64 185 0.77 # 777 # 1598 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.252 2_3 - 245 Methyltransf_26 PF13659.1 117 7.6e-10 27.6 0.0 1 1 4e-10 1e-09 27.2 0.0 2 81 32 105 31 148 0.90 # 1356 # 2090 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 1_1 - 274 Methyltransf_26 PF13659.1 117 1.5e-07 20.2 0.0 1 1 7.7e-08 1.9e-07 19.9 0.0 3 75 85 151 83 211 0.89 # 777 # 1598 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.252 2_3 - 245 PCMT PF01135.14 210 1.8e-07 19.5 0.0 1 1 2.1e-07 5.2e-07 18.0 0.0 53 126 10 80 3 86 0.86 # 1356 # 2090 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 1_1 - 274 PCMT PF01135.14 210 6.6e-06 14.4 0.0 1 1 4.1e-06 1e-05 13.8 0.0 62 120 68 129 42 148 0.83 # 777 # 1598 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.252 2_2 - 159 GntR PF00392.16 64 1.3e-05 13.4 0.0 1 1 5.4e-06 2.7e-05 12.4 0.0 17 59 69 111 57 112 0.87 # 432 # 908 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_1 - 274 Methyltransf_23 PF13489.1 161 2.3e-07 19.3 0.1 1 1 1.6e-07 4.1e-07 18.5 0.1 12 60 71 152 61 229 0.70 # 777 # 1598 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.252 2_3 - 245 Methyltransf_23 PF13489.1 161 2.6e-06 15.9 0.0 1 1 2.9e-06 7.3e-06 14.5 0.0 11 67 17 78 8 119 0.71 # 1356 # 2090 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 1_1 - 274 TIGR01934 TIGR01934 223 2.2e-09 25.2 0.2 1 2 1.5e-09 7.6e-09 23.5 0.0 31 140 74 173 70 193 0.83 # 777 # 1598 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.252 1_1 - 274 TIGR01934 TIGR01934 223 2.2e-09 25.2 0.2 2 2 0.071 0.36 -1.6 0.1 63 114 212 263 201 265 0.71 # 777 # 1598 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.252 2_2 - 159 FaeA PF04703.7 62 3.2e-05 12.8 0.1 1 1 1.1e-05 5.3e-05 12.1 0.1 13 47 74 108 56 112 0.77 # 432 # 908 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 2_3 - 245 Methyltransf_18 PF12847.2 112 1.1e-08 24.4 0.0 1 1 6.1e-09 1.5e-08 23.9 0.0 3 66 32 91 30 151 0.76 # 1356 # 2090 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 1_1 - 274 Methyltransf_18 PF12847.2 112 1.8e-08 23.7 0.0 1 1 1.2e-08 3e-08 23.0 0.0 4 87 85 175 82 214 0.74 # 777 # 1598 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.252 1_1 - 274 Methyltransf_25 PF13649.1 101 7.9e-11 31.0 0.0 1 1 7.3e-11 1.8e-10 29.8 0.0 1 75 86 154 86 174 0.85 # 777 # 1598 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.252 2_3 - 245 Methyltransf_25 PF13649.1 101 3.4e-05 12.9 0.0 1 1 2.9e-05 7.3e-05 11.9 0.0 1 69 34 96 34 121 0.83 # 1356 # 2090 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 2_3 - 245 NodS PF05401.6 201 1.5e-06 16.4 0.0 1 1 4.8e-07 2.4e-06 15.7 0.0 44 107 31 94 9 115 0.84 # 1356 # 2090 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 2_3 - 245 TIGR00755 TIGR00755 256 1.2e-48 154.0 1.2 1 1 2.9e-49 1.5e-48 153.6 1.2 6 254 7 237 3 239 0.88 # 1356 # 2090 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/1ee73975-27b0-4093-99a1-ec8729ca7e5f # Target file: checkm_output/bins/pGCA_001465635.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001465635.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/1ee73975-27b0-4093-99a1-ec8729ca7e5f checkm_output/bins/pGCA_001465635.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Staphylococcus/training_20210111 # Date: Mon Jan 11 14:53:22 2021 # [ok]