# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_4 - 225 MULE PF10551.4 93 9.9e-05 12.9 0.0 1 1 1.4e-05 0.00022 11.8 0.0 19 76 92 146 63 161 0.84 # 1852 # 2526 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.347 1_7 - 225 HEM4 PF02602.10 231 7.7e-05 12.3 0.0 1 1 8e-06 0.00013 11.6 0.0 125 154 24 53 9 70 0.79 # 5264 # 5938 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_3 - 123 Phos_pyr_kin PF08543.7 246 1e-05 15.1 0.0 1 1 6.8e-07 1.1e-05 15.0 0.0 136 233 20 106 2 119 0.80 # 1855 # 2223 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.339 1_1 - 146 HTH_36 PF13730.1 55 1.9e-08 24.7 0.9 1 1 2.1e-09 3.4e-08 24.0 0.9 2 54 32 95 31 96 0.86 # 3 # 440 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.267 1_8 - 187 Hydrolase PF00702.21 215 6.2e-25 79.1 0.5 1 1 5.4e-26 8.7e-25 78.6 0.5 120 213 1 89 1 91 0.97 # 6008 # 6568 # -1 # ID=1_8;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 1_7 - 225 AAA_17 PF13207.1 121 6.2e-07 20.6 1.2 1 1 1.3e-07 1.1e-06 19.9 1.2 23 113 24 122 21 206 0.85 # 5264 # 5938 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 2_4 - 225 AAA_17 PF13207.1 121 2e-06 19.0 0.8 1 1 3.5e-07 2.8e-06 18.5 0.8 23 113 24 122 19 204 0.85 # 1852 # 2526 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.347 1_4 - 274 HTH_1 PF00126.22 60 3.3e-18 55.6 0.0 1 1 3.8e-19 6e-18 54.8 0.0 5 60 5 60 1 60 0.92 # 2447 # 3268 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.298 1_8 - 187 DUF1700 PF08006.6 181 0.00038 10.1 3.8 1 1 3.8e-05 0.00061 9.4 3.8 74 124 129 180 117 184 0.83 # 6008 # 6568 # -1 # ID=1_8;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 1_7 - 225 DDE_Tnp_IS240 PF13610.1 140 9.1e-45 142.4 2.7 1 1 1.6e-45 1.3e-44 141.9 2.7 3 139 72 203 70 204 0.95 # 5264 # 5938 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 2_4 - 225 DDE_Tnp_IS240 PF13610.1 140 3.9e-44 140.3 2.7 1 1 6.8e-45 5.4e-44 139.9 2.7 3 139 72 203 70 204 0.95 # 1852 # 2526 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.347 1_7 - 225 HTH_23 PF13384.1 50 1.9e-06 17.9 0.9 1 1 4.1e-06 3.3e-05 13.9 0.1 28 41 41 54 40 57 0.92 # 5264 # 5938 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 2_4 - 225 HTH_23 PF13384.1 50 2.1e-06 17.7 1.4 1 2 0.095 0.76 0.0 0.0 18 27 26 35 18 38 0.82 # 1852 # 2526 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.347 2_4 - 225 HTH_23 PF13384.1 50 2.1e-06 17.7 1.4 2 2 4.1e-06 3.3e-05 13.9 0.1 28 41 41 54 40 57 0.92 # 1852 # 2526 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.347 1_8 - 187 Hydrolase_3 PF08282.7 254 5e-08 23.1 3.3 1 2 0.011 0.18 1.6 0.0 15 36 8 29 3 50 0.84 # 6008 # 6568 # -1 # ID=1_8;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 1_8 - 187 Hydrolase_3 PF08282.7 254 5e-08 23.1 3.3 2 2 9.8e-09 1.6e-07 21.4 1.1 194 239 63 109 60 115 0.86 # 6008 # 6568 # -1 # ID=1_8;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 1_2 - 256 TIGR02168 TIGR02168 1181 1.5e-06 16.1 35.0 1 1 1.2e-07 1.9e-06 15.8 35.0 253 436 48 231 30 245 0.81 # 880 # 1647 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.270 1_2 - 256 HTH_11 PF08279.7 55 6.5e-05 12.9 0.0 1 1 2.3e-05 0.00036 10.6 0.0 19 40 5 26 2 34 0.87 # 880 # 1647 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.270 1_7 - 225 Arg_repressor PF01316.16 70 4.8e-05 13.3 0.0 1 1 9.2e-06 0.00015 11.7 0.0 24 48 30 54 25 74 0.81 # 5264 # 5938 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_7 - 225 HTH_28 PF13518.1 52 1.4e-05 15.4 0.4 1 1 4e-06 6.4e-05 13.3 0.4 15 36 31 54 17 55 0.80 # 5264 # 5938 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_8 - 187 HAD PF12710.2 192 3.4e-13 40.5 0.0 1 1 3e-14 4.8e-13 40.0 0.0 92 191 11 87 1 88 0.77 # 6008 # 6568 # -1 # ID=1_8;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 1_2 - 256 HlyD PF00529.15 305 0.00016 11.3 17.2 1 1 7.3e-06 0.00012 11.7 15.8 43 133 106 195 95 216 0.83 # 880 # 1647 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.270 2_4 - 225 HTH_Tnp_4 PF13613.1 53 3e-05 13.9 0.3 1 1 1.2e-05 9.8e-05 12.3 0.3 30 49 41 60 18 63 0.83 # 1852 # 2526 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.347 1_7 - 225 HTH_Tnp_4 PF13613.1 53 3.1e-05 13.9 0.3 1 1 1.3e-05 0.0001 12.2 0.3 30 49 41 60 18 63 0.84 # 5264 # 5938 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_8 - 187 IF2_N PF04760.10 54 2e-05 14.6 0.1 1 1 3e-06 4.9e-05 13.4 0.1 9 36 5 30 2 32 0.89 # 6008 # 6568 # -1 # ID=1_8;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 1_3 - 123 PfkB PF00294.19 301 1.3e-19 60.7 0.0 1 1 9.5e-21 1.5e-19 60.5 0.0 190 297 16 113 4 118 0.84 # 1855 # 2223 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.339 1_1 - 146 YTH PF04146.10 140 1.3e-05 15.1 0.1 1 1 1.1e-06 1.8e-05 14.7 0.1 35 104 54 132 35 145 0.67 # 3 # 440 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.267 1_7 - 225 rve PF00665.21 120 8.3e-19 58.2 0.6 1 2 0.083 0.66 0.5 0.0 83 102 30 49 12 52 0.89 # 5264 # 5938 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_7 - 225 rve PF00665.21 120 8.3e-19 58.2 0.6 2 2 6.8e-19 5.5e-18 55.6 0.4 2 117 66 174 65 176 0.93 # 5264 # 5938 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 2_4 - 225 rve PF00665.21 120 7.4e-18 55.2 0.7 1 1 1.9e-18 1.5e-17 54.2 0.3 2 117 66 174 65 176 0.93 # 1852 # 2526 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.347 1_7 - 225 HTH_Tnp_1 PF01527.15 76 0.0014 9.0 3.7 1 2 0.00011 0.0017 8.7 0.3 24 47 29 54 5 69 0.77 # 5264 # 5938 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_7 - 225 HTH_Tnp_1 PF01527.15 76 0.0014 9.0 3.7 2 2 0.047 0.76 0.2 0.2 38 54 98 114 71 138 0.59 # 5264 # 5938 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_7 - 225 DDE_3 PF13358.1 146 1.6e-06 18.3 0.3 1 1 3.6e-07 2.9e-06 17.4 0.3 26 95 74 144 57 206 0.76 # 5264 # 5938 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 2_4 - 225 DDE_3 PF13358.1 146 1.6e-06 18.3 0.3 1 1 3e-07 2.4e-06 17.7 0.3 26 95 74 144 55 206 0.76 # 1852 # 2526 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.347 2_4 - 225 DDE_Tnp_IS66 PF03050.9 271 3.1e-08 23.4 0.9 1 2 3.7e-08 2.9e-07 20.2 0.3 16 97 21 96 7 137 0.76 # 1852 # 2526 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.347 2_4 - 225 DDE_Tnp_IS66 PF03050.9 271 3.1e-08 23.4 0.9 2 2 0.015 0.12 1.8 0.0 243 264 163 184 153 190 0.82 # 1852 # 2526 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.347 1_7 - 225 DDE_Tnp_IS66 PF03050.9 271 7.8e-08 22.1 4.1 1 2 2.1e-08 1.7e-07 21.0 1.3 16 97 21 96 7 135 0.75 # 5264 # 5938 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_7 - 225 DDE_Tnp_IS66 PF03050.9 271 7.8e-08 22.1 4.1 2 2 0.016 0.13 1.7 0.1 243 264 163 184 156 190 0.81 # 5264 # 5938 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_1 - 146 RepA_N PF06970.6 76 3.9e-36 113.1 6.4 1 1 4.6e-37 7.4e-36 112.2 6.4 1 76 15 90 15 90 0.99 # 3 # 440 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.267 1_7 - 225 HTH_32 PF13565.1 77 1.2e-08 26.1 0.7 1 2 6.3e-07 5.1e-06 17.6 0.1 49 76 26 50 11 51 0.86 # 5264 # 5938 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_7 - 225 HTH_32 PF13565.1 77 1.2e-08 26.1 0.7 2 2 0.0017 0.013 6.7 0.0 28 63 135 171 102 183 0.72 # 5264 # 5938 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 2_4 - 225 HTH_32 PF13565.1 77 3.1e-07 21.5 0.5 1 2 3.8e-06 3e-05 15.2 0.1 49 76 26 50 11 51 0.88 # 1852 # 2526 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.347 2_4 - 225 HTH_32 PF13565.1 77 3.1e-07 21.5 0.5 2 2 0.0085 0.068 4.4 0.0 30 63 138 171 100 183 0.74 # 1852 # 2526 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.347 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/a0b0eb9e-e8e5-48ad-b68a-3c683c3b4bf8 # Target file: checkm_output/bins/pGCA_001457495.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001457495.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/a0b0eb9e-e8e5-48ad-b68a-3c683c3b4bf8 checkm_output/bins/pGCA_001457495.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Staphylococcus/training_20210111 # Date: Mon Jan 11 14:53:22 2021 # [ok]