# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_2 - 159 RepL PF05732.6 165 1.8e-72 233.3 4.8 1 1 6.2e-74 2.1e-72 233.1 4.8 1 148 1 148 1 156 0.98 # 1601 # 2077 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_26 - 544 Peptidase_M56 PF05569.6 299 7e-82 266.0 9.9 1 1 2.1e-83 7e-82 266.0 9.9 42 299 2 256 1 256 0.98 # 21267 # 22898 # -1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.268 1_24 - 193 MarR_2 PF12802.2 62 1.2e-05 16.4 0.0 1 2 0.0094 0.16 3.2 0.1 23 45 112 134 78 137 0.90 # 20055 # 20633 # -1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_24 - 193 MarR_2 PF12802.2 62 1.2e-05 16.4 0.0 2 2 3.4e-05 0.00058 11.0 0.0 7 45 149 184 144 187 0.90 # 20055 # 20633 # -1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_22 - 123 MarR_2 PF12802.2 62 0.00011 13.3 0.0 1 1 1.9e-05 0.00033 11.8 0.0 24 55 59 90 33 93 0.84 # 18681 # 19049 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.344 3_1 - 245 Methyltransf_11 PF08241.7 95 1.9e-06 19.7 0.0 1 1 1.1e-07 3.7e-06 18.8 0.0 2 60 36 94 35 99 0.91 # 52 # 786 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 3_2 - 159 HTH_Crp_2 PF13545.1 76 7.2e-07 20.4 0.2 1 1 6.8e-08 1.2e-06 19.7 0.2 30 67 78 115 60 122 0.88 # 1601 # 2077 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_22 - 123 HTH_Crp_2 PF13545.1 76 3.8e-06 18.1 0.1 1 2 0.035 0.59 1.4 0.0 42 58 29 45 22 61 0.73 # 18681 # 19049 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.344 1_22 - 123 HTH_Crp_2 PF13545.1 76 3.8e-06 18.1 0.1 2 2 1.7e-06 2.8e-05 15.3 0.1 32 62 60 90 32 97 0.85 # 18681 # 19049 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.344 3_1 - 245 Methyltransf_4 PF02390.12 197 5.9e-06 16.8 0.3 1 2 1.7e-07 5.9e-06 16.8 0.3 20 97 31 101 4 104 0.77 # 52 # 786 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 3_1 - 245 Methyltransf_4 PF02390.12 197 5.9e-06 16.8 0.3 2 2 0.093 3.2 -1.9 0.1 136 159 187 207 168 229 0.62 # 52 # 786 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 4_1 - 121 HTH_17 PF12728.2 51 0.002 9.8 6.9 1 1 7.3e-05 0.0012 10.5 3.0 12 41 41 78 26 82 0.79 # 2 # 364 # -1 # ID=4_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 4_3 - 121 HTH_17 PF12728.2 51 0.002 9.8 6.9 1 1 7.3e-05 0.0012 10.5 3.0 12 41 41 78 26 82 0.79 # 1557 # 1919 # 1 # ID=4_3;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_24 - 193 Sigma70_r4_2 PF08281.7 54 0.00012 12.9 0.0 1 1 6.1e-06 0.00021 12.2 0.0 10 49 144 183 143 184 0.88 # 20055 # 20633 # -1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_24 - 193 Mga PF05043.8 87 2.2e-07 22.6 0.5 1 2 0.007 0.24 3.2 0.1 24 52 104 132 74 137 0.83 # 20055 # 20633 # -1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_24 - 193 Mga PF05043.8 87 2.2e-07 22.6 0.5 2 2 2.8e-07 9.4e-06 17.3 0.0 16 56 147 186 143 187 0.94 # 20055 # 20633 # -1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_24 - 193 HTH_30 PF13556.1 59 0.00022 12.2 0.1 1 1 1.3e-05 0.00044 11.3 0.1 3 37 151 185 150 190 0.93 # 20055 # 20633 # -1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 3_1 - 245 Methyltransf_31 PF13847.1 152 5.9e-06 17.3 2.8 1 1 2.9e-07 1e-05 16.6 2.6 2 76 29 98 28 225 0.74 # 52 # 786 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 3_2 - 159 FUR PF01475.14 120 9e-06 17.0 0.1 1 2 0.0067 0.23 2.8 0.0 78 102 12 36 2 50 0.71 # 1601 # 2077 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 3_2 - 159 FUR PF01475.14 120 9e-06 17.0 0.1 2 2 9e-06 0.00031 12.1 0.1 12 60 59 108 53 111 0.76 # 1601 # 2077 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_24 - 193 Mor PF08765.6 108 0.00025 12.2 0.1 1 1 1.5e-05 0.0005 11.3 0.1 71 102 159 190 121 192 0.83 # 20055 # 20633 # -1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_24 - 193 HTH_22 PF13309.1 64 3.7e-08 24.5 0.4 1 2 0.084 1.4 0.2 0.0 23 38 70 85 64 85 0.85 # 20055 # 20633 # -1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_24 - 193 HTH_22 PF13309.1 64 3.7e-08 24.5 0.4 2 2 4.8e-08 8.1e-07 20.2 0.1 12 64 136 182 128 182 0.82 # 20055 # 20633 # -1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_23 - 203 HTH_22 PF13309.1 64 2.5e-07 21.9 1.5 1 2 0.00096 0.016 6.4 0.3 3 41 109 147 107 149 0.93 # 19321 # 19929 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_23 - 203 HTH_22 PF13309.1 64 2.5e-07 21.9 1.5 2 2 8.8e-06 0.00015 12.9 0.0 43 61 176 194 171 195 0.94 # 19321 # 19929 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_20 - 225 MULE PF10551.4 93 7.6e-05 14.3 0.0 1 1 1e-05 0.00017 13.2 0.0 19 76 92 146 63 161 0.84 # 15761 # 16435 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_7 - 225 MULE PF10551.4 93 0.00021 12.9 0.0 1 1 2.7e-05 0.00046 11.8 0.0 19 76 92 146 63 161 0.84 # 4293 # 4967 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.347 1_20 - 225 HEM4 PF02602.10 231 0.00015 12.4 0.0 1 1 2.4e-05 0.00027 11.6 0.0 125 154 24 53 9 71 0.78 # 15761 # 16435 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 4_1 - 121 HEM4 PF02602.10 231 0.0002 12.0 0.0 1 1 2.1e-05 0.00024 11.7 0.0 124 155 23 54 8 71 0.78 # 2 # 364 # -1 # ID=4_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 4_3 - 121 HEM4 PF02602.10 231 0.0002 12.0 0.0 1 1 2.1e-05 0.00024 11.7 0.0 124 155 23 54 8 71 0.78 # 1557 # 1919 # 1 # ID=4_3;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_16 - 123 Phos_pyr_kin PF08543.7 246 2.2e-05 15.1 0.0 1 1 6.8e-07 2.3e-05 15.0 0.0 136 233 20 106 2 119 0.80 # 12352 # 12720 # 1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.339 1_14 - 312 HTH_36 PF13730.1 55 1.2e-07 23.3 0.9 1 1 2.8e-08 3.1e-07 21.9 0.9 2 54 32 95 31 96 0.86 # 10002 # 10937 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.272 3_2 - 159 HTH_36 PF13730.1 55 0.00018 13.0 0.0 1 1 3e-05 0.00034 12.2 0.0 26 54 77 105 61 106 0.84 # 1601 # 2077 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_24 - 193 HTH_36 PF13730.1 55 0.00021 12.8 0.1 1 1 3.7e-05 0.00042 11.9 0.1 28 49 163 184 145 186 0.93 # 20055 # 20633 # -1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_21 - 728 Hydrolase PF00702.21 215 2.3e-47 153.5 0.6 1 1 1.4e-48 4.9e-47 152.4 0.6 1 213 409 630 409 632 0.91 # 16505 # 18688 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.382 1_25 - 127 Penicillinase_R PF03965.11 115 1.3e-37 119.8 1.3 1 1 4.3e-39 1.5e-37 119.7 1.3 1 114 8 121 8 122 0.99 # 20897 # 21277 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.255 3_1 - 245 RrnaAD PF00398.15 262 1.4e-75 245.0 4.4 1 1 4.6e-77 1.6e-75 244.9 4.4 1 262 1 244 1 244 0.97 # 52 # 786 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 3_1 - 245 MTS PF05175.9 170 1.1e-05 16.3 0.0 1 1 4.8e-07 1.6e-05 15.7 0.0 25 113 24 109 14 125 0.83 # 52 # 786 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 1_20 - 225 AAA_17 PF13207.1 121 1.3e-06 20.7 1.1 1 1 2.5e-07 2.1e-06 20.0 1.1 23 113 24 122 21 206 0.85 # 15761 # 16435 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 4_1 - 121 AAA_17 PF13207.1 121 1.4e-06 20.6 1.2 1 1 2e-07 1.7e-06 20.3 1.2 23 110 24 119 17 121 0.85 # 2 # 364 # -1 # ID=4_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 4_3 - 121 AAA_17 PF13207.1 121 1.4e-06 20.6 1.2 1 1 2e-07 1.7e-06 20.3 1.2 23 110 24 119 17 121 0.85 # 1557 # 1919 # 1 # ID=4_3;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_7 - 225 AAA_17 PF13207.1 121 4.3e-06 19.0 0.8 1 1 7.1e-07 6e-06 18.5 0.8 23 113 24 122 19 204 0.85 # 4293 # 4967 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.347 3_1 - 245 DOT1 PF08123.8 205 1.1e-05 16.2 1.3 1 2 1.9e-06 6.3e-05 13.7 0.0 29 91 17 77 13 116 0.83 # 52 # 786 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 3_1 - 245 DOT1 PF08123.8 205 1.1e-05 16.2 1.3 2 2 0.016 0.53 0.9 0.6 78 133 180 229 169 236 0.57 # 52 # 786 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 1_17 - 274 HTH_1 PF00126.22 60 7e-18 55.6 0.0 1 1 3.8e-19 1.3e-17 54.8 0.0 5 60 5 60 1 60 0.92 # 12944 # 13765 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.298 1_22 - 123 HTH_34 PF13601.1 80 1.7e-07 22.7 0.0 1 1 9e-09 3.1e-07 21.8 0.0 2 49 44 91 43 95 0.93 # 18681 # 19049 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.344 1_23 - 203 HTH_29 PF13551.1 112 8.2e-07 20.6 0.2 1 1 4.7e-07 8e-06 17.4 0.0 4 34 168 197 166 200 0.91 # 19321 # 19929 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_24 - 193 HTH_29 PF13551.1 112 1.1e-06 20.2 0.6 1 2 0.018 0.31 2.7 0.2 32 69 121 156 118 159 0.73 # 20055 # 20633 # -1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_24 - 193 HTH_29 PF13551.1 112 1.1e-06 20.2 0.6 2 2 1.1e-06 1.9e-05 16.2 0.0 7 39 156 187 151 190 0.91 # 20055 # 20633 # -1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_25 - 127 MarR PF01047.17 59 5.2e-09 27.2 0.1 1 1 1.1e-09 9.1e-09 26.4 0.1 1 54 8 65 8 65 0.97 # 20897 # 21277 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.255 1_22 - 123 MarR PF01047.17 59 1.5e-06 19.3 0.0 1 1 3.7e-07 3.2e-06 18.3 0.0 14 51 53 90 36 91 0.89 # 18681 # 19049 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.344 3_2 - 159 MarR PF01047.17 59 5.3e-05 14.3 0.3 1 1 1.1e-05 9.1e-05 13.6 0.3 19 50 78 109 64 111 0.86 # 1601 # 2077 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_24 - 193 MarR PF01047.17 59 0.00019 12.6 0.1 1 1 5.9e-05 0.0005 11.2 0.0 1 41 145 184 145 188 0.89 # 20055 # 20633 # -1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 3_1 - 245 Methyltransf_12 PF08242.7 99 0.00024 13.0 0.2 1 1 1.9e-05 0.00066 11.6 0.0 2 56 36 88 35 114 0.83 # 52 # 786 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 1_22 - 123 HTH_20 PF12840.2 61 1.1e-14 45.5 0.0 1 1 8.7e-16 1.5e-14 45.0 0.0 2 61 34 93 33 93 0.97 # 18681 # 19049 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.344 3_2 - 159 HTH_20 PF12840.2 61 2.5e-05 15.5 0.0 1 1 2.4e-06 4e-05 14.8 0.0 25 56 77 108 65 111 0.93 # 1601 # 2077 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_24 - 193 RuvB_C PF05491.8 76 0.00024 12.2 0.4 1 2 0.038 1.3 0.2 0.1 55 67 121 133 117 139 0.82 # 20055 # 20633 # -1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_24 - 193 RuvB_C PF05491.8 76 0.00024 12.2 0.4 2 2 8.6e-05 0.0029 8.7 0.0 6 43 145 178 142 182 0.86 # 20055 # 20633 # -1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_22 - 123 HTH_5 PF01022.15 47 1.2e-19 61.2 0.0 1 1 7.6e-21 2.6e-19 60.1 0.0 1 46 41 87 41 88 0.97 # 18681 # 19049 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.344 1_24 - 193 Terminase_5 PF06056.7 58 0.00011 13.2 0.1 1 1 6.2e-06 0.00021 12.3 0.1 7 36 154 183 153 189 0.92 # 20055 # 20633 # -1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_24 - 193 HTH_24 PF13412.1 48 2e-10 31.4 0.3 1 1 3.1e-11 3.5e-10 30.6 0.3 1 41 145 184 145 188 0.96 # 20055 # 20633 # -1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 3_2 - 159 HTH_24 PF13412.1 48 1.1e-07 22.7 1.5 1 2 0.018 0.2 2.6 0.0 5 21 57 73 55 77 0.89 # 1601 # 2077 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 3_2 - 159 HTH_24 PF13412.1 48 1.1e-07 22.7 1.5 2 2 1.2e-07 1.4e-06 19.1 0.4 18 48 77 107 76 107 0.96 # 1601 # 2077 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_22 - 123 HTH_24 PF13412.1 48 8.5e-05 13.4 0.0 1 1 1.3e-05 0.00015 12.6 0.0 2 47 41 86 41 87 0.92 # 18681 # 19049 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.344 1_24 - 193 HTH_AsnC-type PF13404.1 42 6e-05 14.0 0.0 1 1 3.8e-06 0.00013 12.9 0.0 3 41 147 184 145 185 0.90 # 20055 # 20633 # -1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_20 - 225 DDE_Tnp_IS240 PF13610.1 140 8.5e-45 143.5 2.7 1 1 1.4e-45 1.2e-44 143.1 2.7 3 139 72 203 70 204 0.95 # 15761 # 16435 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_7 - 225 DDE_Tnp_IS240 PF13610.1 140 8.4e-44 140.3 2.7 1 1 1.4e-44 1.2e-43 139.9 2.7 3 139 72 203 70 204 0.95 # 4293 # 4967 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.347 4_1 - 121 DDE_Tnp_IS240 PF13610.1 140 1.9e-23 74.4 1.5 1 1 3.5e-24 2.9e-23 73.8 1.5 3 52 72 121 70 121 0.97 # 2 # 364 # -1 # ID=4_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 4_3 - 121 DDE_Tnp_IS240 PF13610.1 140 1.9e-23 74.4 1.5 1 1 3.5e-24 2.9e-23 73.8 1.5 3 52 72 121 70 121 0.97 # 1557 # 1919 # 1 # ID=4_3;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_24 - 193 HTH_IclR PF09339.5 52 8.6e-05 13.5 0.0 1 1 1.3e-05 0.00022 12.2 0.0 7 43 151 185 150 188 0.85 # 20055 # 20633 # -1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_22 - 123 HTH_IclR PF09339.5 52 0.00024 12.1 0.0 1 1 2.7e-05 0.00045 11.2 0.0 9 48 36 86 32 89 0.78 # 18681 # 19049 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.344 1_23 - 203 HTH_7 PF02796.10 45 6.7e-24 75.0 2.1 1 1 7.5e-25 1.3e-23 74.1 0.2 1 45 147 199 147 199 0.95 # 19321 # 19929 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_24 - 193 HTH_7 PF02796.10 45 7.8e-20 62.0 0.2 1 1 9.9e-21 1.7e-19 60.9 0.2 1 43 140 182 140 184 0.98 # 20055 # 20633 # -1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_24 - 193 HTH_DeoR PF08220.7 57 0.0001 13.3 0.0 1 1 1.4e-05 0.00023 12.1 0.0 16 41 162 187 149 189 0.83 # 20055 # 20633 # -1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_25 - 127 HTH_DeoR PF08220.7 57 0.00027 11.9 0.3 1 1 6.9e-05 0.0012 9.9 0.1 8 46 18 60 14 62 0.76 # 20897 # 21277 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.255 1_24 - 193 Phage_antitermQ PF06530.7 126 0.00019 12.4 0.0 1 2 0.011 0.38 1.7 0.0 48 95 55 101 23 113 0.73 # 20055 # 20633 # -1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_24 - 193 Phage_antitermQ PF06530.7 126 0.00019 12.4 0.0 2 2 9.1e-05 0.0031 8.5 0.0 62 101 144 183 141 189 0.90 # 20055 # 20633 # -1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_23 - 203 HTH_23 PF13384.1 50 2.7e-09 27.9 0.1 1 1 1.4e-09 6.9e-09 26.6 0.1 6 39 164 197 159 199 0.89 # 19321 # 19929 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_24 - 193 HTH_23 PF13384.1 50 1.2e-08 25.9 0.0 1 1 5.5e-09 2.7e-08 24.8 0.0 13 42 156 185 150 190 0.86 # 20055 # 20633 # -1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_20 - 225 HTH_23 PF13384.1 50 4e-06 17.9 0.9 1 1 1.4e-05 7e-05 13.9 0.1 28 41 41 54 40 57 0.92 # 15761 # 16435 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_7 - 225 HTH_23 PF13384.1 50 4.5e-06 17.7 1.4 1 1 1.4e-05 7e-05 13.9 0.1 28 41 41 54 40 57 0.92 # 4293 # 4967 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.347 4_1 - 121 HTH_23 PF13384.1 50 1.7e-05 15.9 4.4 1 1 1.5e-05 7.2e-05 13.9 0.7 28 41 41 54 40 70 0.93 # 2 # 364 # -1 # ID=4_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 4_3 - 121 HTH_23 PF13384.1 50 1.7e-05 15.9 4.4 1 1 1.5e-05 7.2e-05 13.9 0.7 28 41 41 54 40 70 0.93 # 1557 # 1919 # 1 # ID=4_3;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 3_2 - 159 HTH_23 PF13384.1 50 0.00022 12.3 0.0 1 1 9.1e-05 0.00044 11.4 0.0 19 45 78 103 68 108 0.88 # 1601 # 2077 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 2_3 - 88 GyrI-like PF06445.10 155 3.6e-15 47.7 0.2 1 1 1.2e-16 4.1e-15 47.5 0.2 1 80 1 81 1 86 0.95 # 2243 # 2506 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_21 - 728 Hydrolase_3 PF08282.7 254 1.9e-06 19.0 3.6 1 2 0.068 2.3 -1.0 0.1 15 36 549 570 543 587 0.86 # 16505 # 18688 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.382 1_21 - 728 Hydrolase_3 PF08282.7 254 1.9e-06 19.0 3.6 2 2 7.1e-08 2.4e-06 18.6 1.0 194 239 604 650 602 654 0.85 # 16505 # 18688 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.382 1_24 - 193 UPF0122 PF04297.9 101 6.6e-05 14.3 0.1 1 1 5.8e-06 0.0002 12.8 0.0 19 59 146 186 142 190 0.86 # 20055 # 20633 # -1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_25 - 127 S-AdoMet_synt_M PF02772.11 120 0.00019 12.8 1.9 1 2 1.4e-05 0.00048 11.5 1.2 64 106 21 62 3 74 0.78 # 20897 # 21277 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.255 1_25 - 127 S-AdoMet_synt_M PF02772.11 120 0.00019 12.8 1.9 2 2 0.045 1.5 0.2 0.0 64 90 89 115 70 126 0.62 # 20897 # 21277 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.255 1_15 - 256 TIGR02168 TIGR02168 1181 3.2e-06 16.1 35.0 1 1 1.2e-07 4e-06 15.8 35.0 253 436 48 231 30 245 0.81 # 11377 # 12144 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.270 1_24 - 193 HTH_11 PF08279.7 55 4.6e-09 27.3 0.1 1 1 1.3e-09 1.1e-08 26.0 0.1 4 41 151 186 147 189 0.81 # 20055 # 20633 # -1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 3_2 - 159 HTH_11 PF08279.7 55 0.00012 13.1 0.2 1 1 2.7e-05 0.00023 12.2 0.2 16 43 77 104 61 112 0.82 # 1601 # 2077 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_23 - 203 HTH_11 PF08279.7 55 0.00013 13.1 1.3 1 1 4e-05 0.00034 11.7 0.1 18 34 178 194 166 195 0.80 # 19321 # 19929 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_15 - 256 HTH_11 PF08279.7 55 0.00014 12.9 0.0 1 1 9e-05 0.00077 10.6 0.0 19 40 5 26 2 34 0.87 # 11377 # 12144 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.270 1_20 - 225 Arg_repressor PF01316.16 70 0.0001 13.3 0.0 1 1 2.8e-05 0.00031 11.7 0.0 24 48 30 54 25 74 0.81 # 15761 # 16435 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 4_1 - 121 Arg_repressor PF01316.16 70 0.0002 12.3 0.0 1 1 3.1e-05 0.00035 11.6 0.0 24 48 30 54 25 75 0.80 # 2 # 364 # -1 # ID=4_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 4_3 - 121 Arg_repressor PF01316.16 70 0.0002 12.3 0.0 1 1 3.1e-05 0.00035 11.6 0.0 24 48 30 54 25 75 0.80 # 1557 # 1919 # 1 # ID=4_3;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_23 - 203 HTH_28 PF13518.1 52 1.1e-08 26.4 0.0 1 1 5.5e-09 3.1e-08 25.0 0.0 4 34 167 197 166 200 0.94 # 19321 # 19929 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_24 - 193 HTH_28 PF13518.1 52 7.6e-06 17.3 0.0 1 1 3.2e-06 1.8e-05 16.1 0.0 8 38 156 186 152 189 0.93 # 20055 # 20633 # -1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 4_1 - 121 HTH_28 PF13518.1 52 1.9e-05 16.1 0.4 1 1 1.1e-05 6.3e-05 14.4 0.4 15 36 31 54 17 55 0.80 # 2 # 364 # -1 # ID=4_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 4_3 - 121 HTH_28 PF13518.1 52 1.9e-05 16.1 0.4 1 1 1.1e-05 6.3e-05 14.4 0.4 15 36 31 54 17 55 0.80 # 1557 # 1919 # 1 # ID=4_3;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_20 - 225 HTH_28 PF13518.1 52 3e-05 15.4 0.4 1 1 2.4e-05 0.00014 13.3 0.4 15 36 31 54 17 55 0.80 # 15761 # 16435 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 3_2 - 159 HTH_28 PF13518.1 52 3.1e-05 15.4 0.0 1 1 1.5e-05 8.5e-05 14.0 0.0 1 41 56 105 56 111 0.82 # 1601 # 2077 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_21 - 728 HAD PF12710.2 192 1.6e-16 52.4 0.0 1 1 1e-17 3.4e-16 51.3 0.0 1 191 412 628 412 629 0.59 # 16505 # 18688 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.382 1_15 - 256 HlyD PF00529.15 305 0.00034 11.3 17.2 1 1 7.3e-06 0.00025 11.7 15.8 43 133 106 195 95 216 0.83 # 11377 # 12144 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.270 3_1 - 245 Methyltransf_26 PF13659.1 117 5.2e-09 27.6 0.0 1 1 2e-10 6.8e-09 27.2 0.0 2 81 32 105 31 148 0.90 # 52 # 786 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 4_1 - 121 HTH_Tnp_4 PF13613.1 53 4.6e-05 14.4 0.4 1 1 2.4e-05 0.0002 12.3 0.4 30 49 41 60 17 63 0.82 # 2 # 364 # -1 # ID=4_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 4_3 - 121 HTH_Tnp_4 PF13613.1 53 4.6e-05 14.4 0.4 1 1 2.4e-05 0.0002 12.3 0.4 30 49 41 60 17 63 0.82 # 1557 # 1919 # 1 # ID=4_3;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_7 - 225 HTH_Tnp_4 PF13613.1 53 6.3e-05 13.9 0.3 1 1 2.5e-05 0.00021 12.3 0.3 30 49 41 60 18 63 0.83 # 4293 # 4967 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.347 1_20 - 225 HTH_Tnp_4 PF13613.1 53 6.5e-05 13.9 0.3 1 1 2.6e-05 0.00022 12.2 0.3 30 49 41 60 18 63 0.84 # 15761 # 16435 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 3_1 - 245 PCMT PF01135.14 210 1.2e-06 19.5 0.0 1 1 1e-07 3.5e-06 18.0 0.0 53 126 10 80 3 86 0.86 # 52 # 786 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 1_23 - 203 CENP-B_N PF04218.8 53 5.8e-07 20.3 2.8 1 2 0.0024 0.08 3.9 0.3 13 26 117 130 115 143 0.85 # 19321 # 19929 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_23 - 203 CENP-B_N PF04218.8 53 5.8e-07 20.3 2.8 2 2 2.9e-07 9.8e-06 16.4 0.1 14 44 167 197 166 202 0.88 # 19321 # 19929 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_16 - 123 PfkB PF00294.19 301 2.7e-19 60.7 0.0 1 1 9.5e-21 3.2e-19 60.5 0.0 190 297 16 113 4 118 0.84 # 12352 # 12720 # 1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.339 3_2 - 159 GntR PF00392.16 64 8.9e-05 13.4 0.0 1 1 5.4e-06 0.00018 12.4 0.0 17 59 69 111 57 112 0.87 # 1601 # 2077 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_14 - 312 YTH PF04146.10 140 4e-05 14.6 0.1 1 1 2.7e-06 9.2e-05 13.5 0.1 35 116 54 142 41 180 0.64 # 10002 # 10937 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.272 2_2 - 214 Biotin_lipoyl_2 PF13533.1 50 0.00029 11.9 0.0 1 1 2.4e-05 0.0008 10.5 0.0 19 30 177 188 177 190 0.88 # 1336 # 1977 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.252 1_22 - 123 Fe_dep_repress PF01325.14 60 6.7e-05 14.2 0.0 1 2 0.014 0.48 1.9 0.0 35 46 28 39 19 43 0.80 # 18681 # 19049 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.344 1_22 - 123 Fe_dep_repress PF01325.14 60 6.7e-05 14.2 0.0 2 2 3.9e-05 0.0013 10.1 0.0 26 57 60 91 53 94 0.91 # 18681 # 19049 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.344 1_24 - 193 TetR_N PF00440.18 47 0.00015 12.9 0.1 1 1 1.7e-05 0.00058 11.0 0.0 16 36 160 180 158 180 0.92 # 20055 # 20633 # -1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_20 - 225 rve PF00665.21 120 5.2e-19 59.9 0.6 1 1 4e-19 3.4e-18 57.3 0.4 2 117 66 174 65 176 0.93 # 15761 # 16435 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_7 - 225 rve PF00665.21 120 1.6e-17 55.2 0.7 1 1 3.7e-18 3.2e-17 54.2 0.3 2 117 66 174 65 176 0.93 # 4293 # 4967 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.347 4_1 - 121 rve PF00665.21 120 1.3e-08 26.4 0.3 1 1 9.3e-09 7.9e-08 23.9 0.2 2 59 66 120 65 121 0.91 # 2 # 364 # -1 # ID=4_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 4_3 - 121 rve PF00665.21 120 1.3e-08 26.4 0.3 1 1 9.3e-09 7.9e-08 23.9 0.2 2 59 66 120 65 121 0.91 # 1557 # 1919 # 1 # ID=4_3;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_24 - 193 HTH_Mga PF08280.6 59 0.00028 12.1 1.2 1 1 2.1e-05 0.0007 10.8 0.3 2 44 144 185 143 187 0.91 # 20055 # 20633 # -1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 4_1 - 121 HTH_Tnp_1 PF01527.15 76 0.00015 13.1 0.3 1 1 1.3e-05 0.00015 13.1 0.3 24 47 29 54 5 70 0.76 # 2 # 364 # -1 # ID=4_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 4_3 - 121 HTH_Tnp_1 PF01527.15 76 0.00015 13.1 0.3 1 1 1.3e-05 0.00015 13.1 0.3 24 47 29 54 5 70 0.76 # 1557 # 1919 # 1 # ID=4_3;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_20 - 225 HTH_Tnp_1 PF01527.15 76 0.0031 8.9 3.7 1 1 0.00049 0.0055 8.1 1.0 24 47 29 54 5 77 0.79 # 15761 # 16435 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_24 - 193 HTH_38 PF13936.1 44 5.8e-07 20.5 0.0 1 1 8e-08 1.4e-06 19.3 0.0 13 43 153 183 143 184 0.87 # 20055 # 20633 # -1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_23 - 203 HTH_38 PF13936.1 44 5.7e-06 17.3 2.7 1 2 0.076 1.3 0.1 0.4 6 24 121 139 119 143 0.82 # 19321 # 19929 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_23 - 203 HTH_38 PF13936.1 44 5.7e-06 17.3 2.7 2 2 6.2e-07 1.1e-05 16.4 0.1 15 39 170 194 158 198 0.90 # 19321 # 19929 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 3_1 - 245 Methyltransf_23 PF13489.1 161 1.7e-05 15.9 0.0 1 1 1.5e-06 4.9e-05 14.5 0.0 11 67 17 78 8 119 0.71 # 52 # 786 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 1_23 - 203 Sigma70_r4 PF04545.11 50 5.5e-05 13.9 0.3 1 1 3.7e-06 0.00013 12.7 0.3 9 42 160 197 159 198 0.94 # 19321 # 19929 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_25 - 127 HTH_27 PF13463.1 68 0.00022 13.0 0.0 1 2 4e-05 0.0014 10.4 0.0 4 54 11 64 8 70 0.92 # 20897 # 21277 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.255 1_25 - 127 HTH_27 PF13463.1 68 0.00022 13.0 0.0 2 2 0.058 2 0.3 0.0 6 29 97 121 94 121 0.83 # 20897 # 21277 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.255 1_26 - 544 SprT-like PF10263.4 157 3.4e-05 14.9 0.0 1 1 2.5e-06 8.4e-05 13.6 0.0 7 71 103 164 98 168 0.85 # 21267 # 22898 # -1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.268 1_24 - 193 HTH_Tnp_IS630 PF01710.11 120 4.8e-05 14.4 0.0 1 1 5.2e-06 8.8e-05 13.6 0.0 17 48 159 190 137 192 0.86 # 20055 # 20633 # -1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_23 - 203 HTH_Tnp_IS630 PF01710.11 120 6.9e-05 13.9 0.1 1 1 1.2e-05 0.0002 12.5 0.1 9 37 166 194 163 201 0.91 # 19321 # 19929 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_24 - 193 HTH_40 PF14493.1 91 2.6e-05 15.8 0.0 1 1 4.9e-06 5.6e-05 14.8 0.0 8 42 155 189 153 191 0.90 # 20055 # 20633 # -1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_23 - 203 HTH_40 PF14493.1 91 5.9e-05 14.7 0.1 1 1 1.6e-05 0.00018 13.1 0.1 7 31 169 193 165 195 0.92 # 19321 # 19929 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_22 - 123 HTH_40 PF14493.1 91 0.00012 13.7 0.1 1 2 0.0082 0.093 4.5 0.0 46 84 7 50 1 51 0.78 # 18681 # 19049 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.344 1_22 - 123 HTH_40 PF14493.1 91 0.00012 13.7 0.1 2 2 6.8e-05 0.00077 11.1 0.0 3 46 45 88 43 119 0.86 # 18681 # 19049 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.344 1_20 - 225 DDE_3 PF13358.1 146 2.2e-06 18.9 0.4 1 1 2.4e-07 4.1e-06 18.0 0.3 26 95 74 144 58 205 0.75 # 15761 # 16435 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_7 - 225 DDE_3 PF13358.1 146 3.4e-06 18.3 0.3 1 1 3e-07 5.1e-06 17.7 0.3 26 95 74 144 55 206 0.76 # 4293 # 4967 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.347 4_1 - 121 DDE_Tnp_IS66 PF03050.9 271 4.7e-08 23.9 0.5 1 1 6e-09 5.1e-08 23.8 0.5 15 97 20 96 7 118 0.77 # 2 # 364 # -1 # ID=4_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 4_3 - 121 DDE_Tnp_IS66 PF03050.9 271 4.7e-08 23.9 0.5 1 1 6e-09 5.1e-08 23.8 0.5 15 97 20 96 7 118 0.77 # 1557 # 1919 # 1 # ID=4_3;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_7 - 225 DDE_Tnp_IS66 PF03050.9 271 6.7e-08 23.4 0.9 1 2 7.3e-08 6.2e-07 20.2 0.3 16 97 21 96 7 137 0.76 # 4293 # 4967 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.347 1_7 - 225 DDE_Tnp_IS66 PF03050.9 271 6.7e-08 23.4 0.9 2 2 0.03 0.25 1.8 0.0 243 264 163 184 153 190 0.82 # 4293 # 4967 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.347 1_20 - 225 DDE_Tnp_IS66 PF03050.9 271 1.7e-07 22.0 4.4 1 2 4.4e-08 3.7e-07 20.9 1.3 16 97 21 96 7 134 0.75 # 15761 # 16435 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_20 - 225 DDE_Tnp_IS66 PF03050.9 271 1.7e-07 22.0 4.4 2 2 0.026 0.22 2.0 0.1 243 264 163 184 132 190 0.84 # 15761 # 16435 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 3_2 - 159 FaeA PF04703.7 62 0.00022 12.8 0.1 1 1 1.1e-05 0.00036 12.1 0.1 13 47 74 108 56 112 0.77 # 1601 # 2077 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_24 - 193 TrmB PF01978.14 68 1.7e-06 19.1 0.0 1 1 2.5e-07 4.2e-06 17.9 0.0 8 48 147 186 144 188 0.77 # 20055 # 20633 # -1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_22 - 123 TrmB PF01978.14 68 4.5e-06 17.8 0.0 1 1 4.5e-07 7.7e-06 17.0 0.0 15 62 49 97 41 101 0.84 # 18681 # 19049 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.344 1_26 - 544 Peptidase_M48 PF01435.13 226 0.00017 12.5 0.1 1 1 1.3e-05 0.00044 11.2 0.1 66 121 133 185 84 208 0.75 # 21267 # 22898 # -1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.268 3_1 - 245 Methyltransf_18 PF12847.2 112 7.4e-08 24.4 0.0 1 1 3e-09 1e-07 23.9 0.0 3 66 32 91 30 151 0.76 # 52 # 786 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 1_24 - 193 Trp_repressor PF01371.14 88 1e-05 16.9 0.7 1 2 0.057 1.9 -0.1 0.1 3 33 87 117 85 124 0.83 # 20055 # 20633 # -1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_24 - 193 Trp_repressor PF01371.14 88 1e-05 16.9 0.7 2 2 2.8e-06 9.4e-05 13.7 0.1 39 79 150 190 146 192 0.89 # 20055 # 20633 # -1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_14 - 312 RepA_N PF06970.6 76 2.8e-35 111.5 6.4 1 1 2.4e-36 8e-35 110.0 6.4 1 76 15 90 15 90 0.99 # 10002 # 10937 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.272 3_1 - 245 Methyltransf_25 PF13649.1 101 0.00023 12.9 0.0 1 1 1.5e-05 0.0005 11.9 0.0 1 69 34 96 34 121 0.83 # 52 # 786 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 3_1 - 245 NodS PF05401.6 201 1e-05 16.4 0.0 1 1 4.8e-07 1.6e-05 15.7 0.0 44 107 31 94 9 115 0.84 # 52 # 786 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 3_1 - 245 TIGR00755 TIGR00755 256 7.9e-48 154.0 1.2 1 1 2.9e-49 1e-47 153.6 1.2 6 254 7 237 3 239 0.88 # 52 # 786 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 1_20 - 225 HTH_32 PF13565.1 77 1.6e-08 26.7 0.8 1 2 1.6e-06 1.1e-05 17.6 0.1 49 76 26 50 11 51 0.86 # 15761 # 16435 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_20 - 225 HTH_32 PF13565.1 77 1.6e-08 26.7 0.8 2 2 0.0026 0.018 7.3 0.1 28 63 135 171 102 183 0.72 # 15761 # 16435 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_7 - 225 HTH_32 PF13565.1 77 6.5e-07 21.5 0.5 1 2 9.4e-06 6.4e-05 15.2 0.1 49 76 26 50 11 51 0.88 # 4293 # 4967 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.347 1_7 - 225 HTH_32 PF13565.1 77 6.5e-07 21.5 0.5 2 2 0.021 0.14 4.4 0.0 30 63 138 171 100 183 0.74 # 4293 # 4967 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.347 4_1 - 121 HTH_32 PF13565.1 77 2.3e-06 19.8 0.1 1 1 7.2e-07 4.9e-06 18.7 0.1 48 76 25 50 9 51 0.86 # 2 # 364 # -1 # ID=4_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 4_3 - 121 HTH_32 PF13565.1 77 2.3e-06 19.8 0.1 1 1 7.2e-07 4.9e-06 18.7 0.1 48 76 25 50 9 51 0.86 # 1557 # 1919 # 1 # ID=4_3;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_24 - 193 HTH_32 PF13565.1 77 5.9e-06 18.5 0.3 1 1 1.7e-06 1.2e-05 17.5 0.3 19 77 131 181 118 181 0.80 # 20055 # 20633 # -1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/bee3ee22-24bb-42e9-945c-62b9d0bd5ab8 # Target file: checkm_output/bins/pGCA_001296985.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001296985.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/bee3ee22-24bb-42e9-945c-62b9d0bd5ab8 checkm_output/bins/pGCA_001296985.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Staphylococcus/training_20210111 # Date: Mon Jan 11 14:53:17 2021 # [ok]