# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_8 - 203 GerE PF00196.14 58 0.00019 12.2 0.1 1 1 1.1e-05 0.00037 11.3 0.1 11 35 168 192 166 196 0.94 # 8976 # 9584 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_5 - 554 Peptidase_M56 PF05569.6 299 1.3e-87 284.9 13.3 1 1 8e-89 2.8e-87 283.8 13.3 32 299 2 266 1 266 0.99 # 5976 # 7637 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.262 1_15 - 131 TIGR01978 TIGR01978 243 1.4e-12 38.6 1.7 1 1 4.9e-14 1.7e-12 38.3 1.7 124 208 35 117 6 123 0.76 # 12900 # 13292 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.290 1_16 - 36 Phage_CI_repr PF07022.8 66 3.4e-05 15.4 0.0 1 1 9.9e-07 3.5e-05 15.3 0.0 14 33 17 35 4 36 0.82 # 13475 # 13582 # 1 # ID=1_16;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.324 1_15 - 131 AAA_13 PF13166.1 712 1.4e-06 18.4 0.7 1 1 6.6e-08 2.3e-06 17.7 0.7 499 578 52 120 10 127 0.81 # 12900 # 13292 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.290 1_7 - 193 MarR_2 PF12802.2 62 1.6e-05 16.0 0.0 1 2 0.0094 0.16 3.2 0.1 23 45 112 134 78 137 0.90 # 8271 # 8849 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_7 - 193 MarR_2 PF12802.2 62 1.6e-05 16.0 0.0 2 2 4.5e-05 0.0008 10.6 0.0 7 45 149 184 144 187 0.89 # 8271 # 8849 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_16 - 36 MarR_2 PF12802.2 62 0.00013 13.1 0.0 1 1 7.6e-06 0.00013 13.1 0.0 19 40 15 34 4 34 0.85 # 13475 # 13582 # 1 # ID=1_16;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.324 1_16 - 36 HTH_Crp_2 PF13545.1 76 1e-05 16.7 0.0 1 1 3.1e-07 1.1e-05 16.7 0.0 29 47 16 34 2 35 0.84 # 13475 # 13582 # 1 # ID=1_16;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.324 1_16 - 36 HTH_17 PF12728.2 51 2.3e-05 16.1 0.0 1 1 1e-06 3.7e-05 15.4 0.0 4 21 18 35 16 35 0.92 # 13475 # 13582 # 1 # ID=1_16;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.324 1_16 - 36 HTH_19 PF12844.2 64 1.4e-11 35.8 0.5 1 1 4.2e-13 1.5e-11 35.7 0.5 2 33 5 36 4 36 0.97 # 13475 # 13582 # 1 # ID=1_16;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.324 1_16 - 36 Sigma70_r4_2 PF08281.7 54 6.9e-06 17.0 0.0 1 1 5.1e-07 8.9e-06 16.6 0.0 22 45 11 34 9 35 0.91 # 13475 # 13582 # 1 # ID=1_16;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.324 1_7 - 193 Sigma70_r4_2 PF08281.7 54 0.00032 11.7 0.0 1 1 3.3e-05 0.00057 10.8 0.0 10 48 144 182 143 183 0.86 # 8271 # 8849 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_7 - 193 Mga PF05043.8 87 1.6e-07 23.0 0.6 1 2 0.007 0.24 3.2 0.1 24 52 104 132 74 137 0.83 # 8271 # 8849 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_7 - 193 Mga PF05043.8 87 1.6e-07 23.0 0.6 2 2 1.8e-07 6.4e-06 17.9 0.1 16 56 147 186 143 187 0.94 # 8271 # 8849 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_16 - 36 DUF1323 PF07037.6 122 0.00011 13.8 0.1 1 1 4.4e-06 0.00015 13.4 0.1 3 20 18 35 16 36 0.94 # 13475 # 13582 # 1 # ID=1_16;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.324 1_16 - 36 HTH_31 PF13560.1 64 8.4e-10 30.2 0.1 1 1 2.5e-11 8.7e-10 30.2 0.1 2 35 3 36 2 36 0.97 # 13475 # 13582 # 1 # ID=1_16;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.324 1_7 - 193 HTH_22 PF13309.1 64 3.8e-08 24.5 0.4 1 2 0.084 1.5 0.2 0.0 23 38 70 85 64 85 0.85 # 8271 # 8849 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_7 - 193 HTH_22 PF13309.1 64 3.8e-08 24.5 0.4 2 2 4.8e-08 8.4e-07 20.2 0.1 12 64 136 182 128 182 0.82 # 8271 # 8849 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_8 - 203 HTH_22 PF13309.1 64 1.1e-07 23.1 1.2 1 3 0.054 0.95 0.8 0.0 23 38 71 86 62 95 0.84 # 8976 # 9584 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_8 - 203 HTH_22 PF13309.1 64 1.1e-07 23.1 1.2 2 3 0.0011 0.019 6.2 0.2 2 41 108 147 107 149 0.93 # 8976 # 9584 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_8 - 203 HTH_22 PF13309.1 64 1.1e-07 23.1 1.2 3 3 8.8e-06 0.00015 12.9 0.0 43 61 176 194 171 195 0.94 # 8976 # 9584 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_16 - 36 HTH_37 PF13744.1 80 2.2e-08 25.3 0.3 1 1 6.2e-10 2.2e-08 25.3 0.3 18 50 2 34 1 36 0.95 # 13475 # 13582 # 1 # ID=1_16;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.324 5_1 - 231 MULE PF10551.4 93 7.1e-05 14.4 0.1 1 1 5.9e-06 0.00021 13.0 0.0 19 78 98 154 83 171 0.82 # 44 # 736 # -1 # ID=5_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.330 1_16 - 36 NUMOD1 PF07453.8 37 0.00035 11.9 0.0 1 1 1.6e-05 0.00055 11.3 0.0 18 35 17 34 16 34 0.93 # 13475 # 13582 # 1 # ID=1_16;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.324 4_2 - 124 Thioredoxin_2 PF13098.1 112 4.6e-10 31.2 0.0 1 1 1.8e-11 6.5e-10 30.7 0.0 4 102 28 112 25 118 0.73 # 317 # 688 # -1 # ID=4_2;partial=00;start_type=TTG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.261 2_8 - 315 HTH_36 PF13730.1 55 6.4e-08 24.2 0.5 1 1 1.3e-08 1.5e-07 23.0 0.5 2 54 32 95 31 96 0.85 # 3062 # 4006 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.277 1_7 - 193 HTH_36 PF13730.1 55 9.2e-05 14.0 0.1 1 1 1.7e-05 0.00019 13.0 0.1 28 49 163 184 145 186 0.93 # 8271 # 8849 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_16 - 36 HTH_36 PF13730.1 55 0.00022 12.8 0.0 1 1 2.1e-05 0.00025 12.6 0.0 27 45 17 35 2 35 0.94 # 13475 # 13582 # 1 # ID=1_16;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.324 1_6 - 127 Penicillinase_R PF03965.11 115 1.3e-37 119.8 1.3 1 1 4.3e-39 1.5e-37 119.7 1.3 1 114 8 121 8 122 0.99 # 7627 # 8007 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.249 5_1 - 231 AAA_17 PF13207.1 121 8.1e-05 14.9 0.7 1 1 4e-06 0.00014 14.2 0.7 23 112 30 127 26 178 0.80 # 44 # 736 # -1 # ID=5_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.330 2_3 - 116 HTH_34 PF13601.1 80 0.00013 13.5 0.2 1 1 5.4e-06 0.00019 12.9 0.2 2 49 44 91 43 96 0.93 # 459 # 806 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.256 1_8 - 203 HTH_29 PF13551.1 112 1.6e-06 19.7 0.2 1 1 5.2e-07 9.1e-06 17.3 0.1 4 34 168 197 166 199 0.91 # 8976 # 9584 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_7 - 193 HTH_29 PF13551.1 112 2.7e-06 19.0 0.9 1 2 0.018 0.32 2.7 0.2 32 69 121 156 118 159 0.73 # 8271 # 8849 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_7 - 193 HTH_29 PF13551.1 112 2.7e-06 19.0 0.9 2 2 3.1e-06 5.4e-05 14.8 0.0 7 39 156 187 151 190 0.91 # 8271 # 8849 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_6 - 127 MarR PF01047.17 59 5.4e-09 27.2 0.1 1 1 5.3e-10 9.3e-09 26.4 0.1 1 54 8 65 8 65 0.97 # 7627 # 8007 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.249 1_7 - 193 MarR PF01047.17 59 0.00022 12.4 0.1 1 1 3.3e-05 0.00057 11.1 0.0 1 41 145 184 145 188 0.89 # 8271 # 8849 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 2_3 - 116 HTH_20 PF12840.2 61 2.2e-05 15.7 0.0 1 1 7.7e-07 2.7e-05 15.4 0.0 15 57 48 89 34 93 0.87 # 459 # 806 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.256 1_7 - 193 RuvB_C PF05491.8 76 0.00022 12.3 0.4 1 2 0.038 1.3 0.2 0.1 55 67 121 133 117 139 0.82 # 8271 # 8849 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_7 - 193 RuvB_C PF05491.8 76 0.00022 12.3 0.4 2 2 8.6e-05 0.003 8.7 0.0 6 43 145 178 142 182 0.86 # 8271 # 8849 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 2_3 - 116 HTH_5 PF01022.15 47 1.4e-17 54.6 1.6 1 1 1.4e-18 2.4e-17 53.9 1.6 1 45 41 86 41 88 0.95 # 459 # 806 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.256 1_7 - 193 HTH_5 PF01022.15 47 0.00013 13.1 0.0 1 1 1.4e-05 0.00025 12.2 0.0 5 42 150 187 147 188 0.86 # 8271 # 8849 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_16 - 36 HHH_5 PF14520.1 60 0.00018 13.2 0.0 1 1 5.1e-06 0.00018 13.2 0.0 20 54 2 35 1 36 0.91 # 13475 # 13582 # 1 # ID=1_16;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.324 1_7 - 193 Terminase_5 PF06056.7 58 0.00023 12.2 0.1 1 1 1.2e-05 0.00043 11.3 0.1 7 36 154 183 153 189 0.91 # 8271 # 8849 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_7 - 193 HTH_24 PF13412.1 48 2.6e-10 31.0 0.2 1 1 1.3e-11 4.7e-10 30.2 0.2 1 41 145 184 145 188 0.96 # 8271 # 8849 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_15 - 131 AAA_21 PF13304.1 303 1.4e-11 36.2 0.4 1 1 4.3e-13 1.5e-11 36.1 0.4 197 301 21 115 1 117 0.68 # 12900 # 13292 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.290 1_7 - 193 HTH_AsnC-type PF13404.1 42 0.00012 13.0 0.0 1 1 7.3e-06 0.00026 12.0 0.0 3 41 147 184 145 185 0.87 # 8271 # 8849 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 5_1 - 231 DDE_Tnp_IS240 PF13610.1 140 2.1e-43 139.1 1.4 1 1 8.9e-45 3.1e-43 138.5 1.4 3 139 78 209 76 210 0.95 # 44 # 736 # -1 # ID=5_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.330 1_7 - 193 HTH_IclR PF09339.5 52 9e-05 13.5 0.0 1 1 6.7e-06 0.00023 12.2 0.0 7 43 151 185 150 188 0.85 # 8271 # 8849 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_8 - 203 HTH_7 PF02796.10 45 1.1e-23 74.3 1.3 1 1 8.3e-25 1.5e-23 74.0 0.2 1 44 147 198 147 199 0.95 # 8976 # 9584 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_7 - 193 HTH_7 PF02796.10 45 2.7e-20 63.5 0.2 1 1 3.4e-21 5.9e-20 62.4 0.2 1 44 140 183 140 184 0.98 # 8271 # 8849 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_15 - 131 SbcCD_C PF13558.1 90 5.5e-06 17.7 0.0 1 1 2.5e-06 8.7e-05 13.9 0.0 23 88 44 96 21 98 0.79 # 12900 # 13292 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.290 1_7 - 193 HTH_DeoR PF08220.7 57 2.7e-05 15.1 0.0 1 1 3.5e-06 6.2e-05 14.0 0.0 16 41 162 187 149 189 0.83 # 8271 # 8849 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_6 - 127 HTH_DeoR PF08220.7 57 0.00028 11.9 0.3 1 1 6.9e-05 0.0012 9.9 0.1 8 46 18 60 14 62 0.76 # 7627 # 8007 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.249 1_7 - 193 Phage_antitermQ PF06530.7 126 0.00029 11.9 0.0 1 2 0.021 0.74 0.9 0.0 52 95 58 101 37 112 0.83 # 8271 # 8849 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_7 - 193 Phage_antitermQ PF06530.7 126 0.00029 11.9 0.0 2 2 8.1e-05 0.0028 8.7 0.0 62 101 144 183 141 189 0.90 # 8271 # 8849 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_1 - 163 Peptidase_M50 PF02163.17 192 0.038 4.3 11.1 1 1 0.0036 0.12 2.6 11.1 117 142 35 119 8 124 0.66 # 1172 # 1660 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.188 1_8 - 203 HTH_23 PF13384.1 50 1.9e-09 28.4 0.5 1 1 4.4e-10 3.8e-09 27.5 0.1 4 40 162 198 159 202 0.88 # 8976 # 9584 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_16 - 36 HTH_23 PF13384.1 50 1.8e-08 25.3 0.0 1 1 2.1e-09 1.8e-08 25.3 0.0 8 37 4 35 1 36 0.90 # 13475 # 13582 # 1 # ID=1_16;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.324 1_7 - 193 HTH_23 PF13384.1 50 2.6e-08 24.8 0.0 1 1 7.2e-09 6.3e-08 23.6 0.0 13 42 156 185 150 190 0.86 # 8271 # 8849 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 5_1 - 231 HTH_23 PF13384.1 50 7.3e-05 13.9 0.3 1 1 8.2e-05 0.00072 10.7 0.1 29 41 48 60 47 64 0.93 # 44 # 736 # -1 # ID=5_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.330 1_16 - 36 Sigma70_ECF PF07638.6 185 3.3e-05 15.0 0.0 1 1 9.4e-07 3.3e-05 15.0 0.0 145 170 9 34 2 36 0.89 # 13475 # 13582 # 1 # ID=1_16;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.324 1_7 - 193 UPF0122 PF04297.9 101 0.0001 13.8 0.1 1 1 8.1e-06 0.00028 12.4 0.0 19 59 146 186 142 190 0.86 # 8271 # 8849 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_6 - 127 S-AdoMet_synt_M PF02772.11 120 0.00019 12.8 1.9 1 2 1.4e-05 0.00049 11.5 1.2 64 106 21 62 3 74 0.78 # 7627 # 8007 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.249 1_6 - 127 S-AdoMet_synt_M PF02772.11 120 0.00019 12.8 1.9 2 2 0.045 1.6 0.2 0.0 64 90 89 115 70 126 0.62 # 7627 # 8007 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.249 2_9 - 257 TIGR02168 TIGR02168 1181 1.1e-07 20.9 32.6 1 1 3.8e-09 1.3e-07 20.7 32.6 253 434 48 230 20 247 0.83 # 4450 # 5220 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.267 1_7 - 193 HTH_11 PF08279.7 55 3.9e-09 27.6 0.1 1 1 1e-09 9.1e-09 26.4 0.1 4 41 151 186 147 189 0.81 # 8271 # 8849 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_16 - 36 HTH_11 PF08279.7 55 9.6e-06 16.7 0.1 1 1 1.3e-06 1.2e-05 16.4 0.1 11 34 12 34 2 34 0.76 # 13475 # 13582 # 1 # ID=1_16;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.324 1_8 - 203 HTH_11 PF08279.7 55 9.4e-05 13.5 0.1 1 1 4e-05 0.00035 11.7 0.1 18 34 178 194 166 195 0.80 # 8976 # 9584 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 2_9 - 257 HTH_11 PF08279.7 55 0.00015 12.8 0.0 1 1 7.3e-05 0.00064 10.9 0.0 21 40 7 26 3 30 0.87 # 4450 # 5220 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.267 1_16 - 36 P22_Cro PF14549.1 60 3.9e-06 18.0 0.6 1 1 1.5e-07 5.1e-06 17.6 0.2 11 29 17 35 16 36 0.93 # 13475 # 13582 # 1 # ID=1_16;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.324 1_8 - 203 HTH_28 PF13518.1 52 1.4e-08 26.1 0.1 1 1 4.4e-09 3.9e-08 24.7 0.1 4 34 167 197 166 198 0.94 # 8976 # 9584 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_16 - 36 HTH_28 PF13518.1 52 7.3e-07 20.6 0.1 1 1 8.8e-08 7.7e-07 20.6 0.1 10 32 12 35 2 36 0.82 # 13475 # 13582 # 1 # ID=1_16;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.324 1_7 - 193 HTH_28 PF13518.1 52 1.3e-05 16.6 0.0 1 1 3.8e-06 3.4e-05 15.3 0.0 8 38 156 186 152 189 0.93 # 8271 # 8849 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 5_1 - 231 HTH_28 PF13518.1 52 0.00017 13.1 2.9 1 1 2.3e-05 0.0002 12.8 0.7 14 36 36 60 23 61 0.85 # 44 # 736 # -1 # ID=5_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.330 2_9 - 257 HlyD PF00529.15 305 0.0036 8.0 14.0 1 1 0.00014 0.005 7.5 14.0 43 137 106 202 94 228 0.78 # 4450 # 5220 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.267 1_7 - 193 HTH_Tnp_4 PF13613.1 53 0.00022 12.2 0.0 1 1 1.3e-05 0.00046 11.2 0.0 24 43 165 184 159 186 0.88 # 8271 # 8849 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_8 - 203 CENP-B_N PF04218.8 53 6.6e-08 23.4 3.1 1 2 0.00037 0.013 6.4 0.3 13 35 117 139 115 142 0.85 # 8976 # 9584 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_8 - 203 CENP-B_N PF04218.8 53 6.6e-08 23.4 3.1 2 2 1.6e-07 5.5e-06 17.2 0.2 14 46 167 199 166 200 0.91 # 8976 # 9584 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 2_4 - 206 Virul_fac_BrkB PF03631.10 260 0.0015 9.2 23.5 1 2 7.7e-06 0.00027 11.7 7.6 166 235 11 79 1 81 0.84 # 825 # 1442 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 2_4 - 206 Virul_fac_BrkB PF03631.10 260 0.0015 9.2 23.5 2 2 0.0021 0.075 3.7 8.0 115 180 135 191 107 193 0.63 # 825 # 1442 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 4_2 - 124 Thioredoxin PF00085.15 104 0.00021 12.5 0.0 1 1 1.8e-05 0.00065 10.9 0.0 28 93 38 114 13 122 0.70 # 317 # 688 # -1 # ID=4_2;partial=00;start_type=TTG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.261 1_15 - 131 AAA_15 PF13175.1 415 2.5e-06 18.1 1.5 1 1 1.1e-07 3.9e-06 17.5 1.5 291 411 9 112 2 116 0.69 # 12900 # 13292 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.290 1_7 - 193 TetR_N PF00440.18 47 0.00015 12.8 0.1 1 1 1.7e-05 0.00059 11.0 0.0 16 36 160 180 158 180 0.92 # 8271 # 8849 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 5_1 - 231 rve PF00665.21 120 1.7e-16 51.9 0.4 1 1 1.4e-17 5.1e-16 50.3 0.2 4 117 74 180 71 182 0.87 # 44 # 736 # -1 # ID=5_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.330 1_7 - 193 HTH_Mga PF08280.6 59 0.00021 12.5 1.3 1 1 9.4e-06 0.00033 11.9 0.5 2 44 144 185 143 187 0.91 # 8271 # 8849 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_16 - 36 HTH_25 PF13413.1 62 1.1e-06 19.7 0.1 1 1 3.2e-08 1.1e-06 19.7 0.1 2 27 7 32 6 36 0.89 # 13475 # 13582 # 1 # ID=1_16;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.324 5_1 - 231 HTH_Tnp_1 PF01527.15 76 0.00034 12.1 0.3 1 1 1.9e-05 0.00067 11.1 0.3 24 47 35 60 11 79 0.79 # 44 # 736 # -1 # ID=5_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.330 1_7 - 193 HTH_38 PF13936.1 44 2.5e-06 18.5 0.0 1 1 5.3e-07 6.2e-06 17.2 0.0 13 41 153 181 143 183 0.86 # 8271 # 8849 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_16 - 36 HTH_38 PF13936.1 44 4.3e-06 17.7 0.0 1 1 3.9e-07 4.6e-06 17.6 0.0 12 39 6 34 2 35 0.89 # 13475 # 13582 # 1 # ID=1_16;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.324 1_8 - 203 HTH_38 PF13936.1 44 9.2e-06 16.7 2.2 1 1 1.2e-06 1.4e-05 16.0 0.2 15 39 170 194 160 195 0.93 # 8976 # 9584 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_16 - 36 Sigma70_r4 PF04545.11 50 1.9e-06 18.6 0.0 1 1 1.1e-07 2e-06 18.6 0.0 15 39 10 34 4 36 0.88 # 13475 # 13582 # 1 # ID=1_16;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.324 1_8 - 203 Sigma70_r4 PF04545.11 50 2.5e-05 15.0 0.2 1 1 3.7e-06 6.4e-05 13.7 0.2 9 42 160 197 157 198 0.93 # 8976 # 9584 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_6 - 127 HTH_27 PF13463.1 68 0.00022 13.0 0.0 1 2 4e-05 0.0014 10.4 0.0 4 54 11 64 8 70 0.92 # 7627 # 8007 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.249 1_6 - 127 HTH_27 PF13463.1 68 0.00022 13.0 0.0 2 2 0.058 2 0.3 0.0 6 29 97 121 94 121 0.83 # 7627 # 8007 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.249 1_5 - 554 SprT-like PF10263.4 157 6.1e-05 14.1 0.0 1 1 4.8e-06 0.00017 12.7 0.0 7 71 113 174 108 177 0.79 # 5976 # 7637 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.262 1_7 - 193 HTH_Tnp_IS630 PF01710.11 120 5.4e-05 14.3 0.0 1 1 6e-06 0.0001 13.4 0.0 17 48 159 190 134 192 0.86 # 8271 # 8849 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_8 - 203 HTH_Tnp_IS630 PF01710.11 120 9e-05 13.6 0.1 1 1 1.3e-05 0.00022 12.3 0.1 9 37 166 194 162 201 0.92 # 8976 # 9584 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 2_4 - 206 Cad PF03596.8 191 2e-85 276.7 16.4 1 1 6.7e-87 2.3e-85 276.5 16.4 1 191 12 203 12 203 0.99 # 825 # 1442 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_7 - 193 HTH_40 PF14493.1 91 2.4e-05 16.0 0.0 1 1 2.9e-06 5e-05 15.0 0.0 8 42 155 189 153 191 0.90 # 8271 # 8849 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_8 - 203 HTH_40 PF14493.1 91 5.8e-05 14.8 0.1 1 1 1.1e-05 0.00019 13.1 0.1 7 31 169 193 165 195 0.92 # 8976 # 9584 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_16 - 36 HTH_3 PF01381.17 55 2e-12 38.3 0.6 1 1 7.4e-14 2.6e-12 37.9 0.6 1 30 7 36 7 36 0.99 # 13475 # 13582 # 1 # ID=1_16;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.324 5_1 - 231 DDE_3 PF13358.1 146 4e-07 21.3 0.2 1 1 1.5e-08 5.1e-07 21.0 0.2 17 95 73 150 31 203 0.81 # 44 # 736 # -1 # ID=5_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.330 5_1 - 231 DDE_Tnp_IS66 PF03050.9 271 7.4e-09 26.5 1.1 1 2 1.4e-09 5e-08 23.8 0.3 15 103 26 108 13 140 0.77 # 44 # 736 # -1 # ID=5_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.330 5_1 - 231 DDE_Tnp_IS66 PF03050.9 271 7.4e-09 26.5 1.1 2 2 0.0087 0.3 1.6 0.0 243 261 169 186 162 195 0.78 # 44 # 736 # -1 # ID=5_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.330 1_7 - 193 TrmB PF01978.14 68 2e-06 18.9 0.0 1 1 1.3e-07 4.5e-06 17.8 0.0 8 48 147 186 144 188 0.77 # 8271 # 8849 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 4_2 - 124 Thioredoxin_8 PF13905.1 95 4.5e-06 18.2 0.4 1 2 1.9e-06 6.5e-05 14.5 0.1 1 31 28 58 28 76 0.84 # 317 # 688 # -1 # ID=4_2;partial=00;start_type=TTG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.261 4_2 - 124 Thioredoxin_8 PF13905.1 95 4.5e-06 18.2 0.4 2 2 0.013 0.47 2.1 0.1 67 93 76 104 61 106 0.69 # 317 # 688 # -1 # ID=4_2;partial=00;start_type=TTG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.261 1_15 - 131 ABC_tran PF00005.22 137 5.3e-16 50.6 0.2 1 1 2.2e-17 7.7e-16 50.1 0.2 65 136 2 81 1 82 0.86 # 12900 # 13292 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.290 1_5 - 554 Peptidase_M48 PF01435.13 226 7.8e-05 13.7 0.1 1 1 7.2e-06 0.00025 12.0 0.1 64 126 141 200 81 215 0.73 # 5976 # 7637 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.262 1_15 - 131 SMC_N PF02463.14 220 4.4e-07 20.7 1.3 1 1 1.5e-08 5.1e-07 20.5 1.3 105 213 25 127 4 130 0.69 # 12900 # 13292 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.290 4_2 - 124 TraF PF13728.1 215 1.6e-05 15.8 0.0 1 1 5.4e-07 1.9e-05 15.6 0.0 130 194 38 104 17 116 0.84 # 317 # 688 # -1 # ID=4_2;partial=00;start_type=TTG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.261 1_7 - 193 Trp_repressor PF01371.14 88 1.1e-05 16.8 0.6 1 2 0.057 2 -0.1 0.1 3 33 87 117 85 124 0.83 # 8271 # 8849 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_7 - 193 Trp_repressor PF01371.14 88 1.1e-05 16.8 0.6 2 2 2e-06 6.9e-05 14.2 0.0 39 79 150 190 146 192 0.89 # 8271 # 8849 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 2_8 - 315 RepA_N PF06970.6 76 2e-35 111.9 4.9 1 1 1.8e-36 6.2e-35 110.4 4.9 1 76 15 90 15 90 0.99 # 3062 # 4006 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.277 2_4 - 206 Sdh_cyt PF01127.17 121 0.00096 10.4 15.6 1 2 0.00031 0.011 7.0 1.9 35 120 13 117 2 118 0.59 # 825 # 1442 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 2_4 - 206 Sdh_cyt PF01127.17 121 0.00096 10.4 15.6 2 2 0.001 0.035 5.4 6.2 33 78 144 189 129 192 0.52 # 825 # 1442 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 2_10 - 32 zf-C4_Topoisom PF01396.14 39 5e-06 17.5 0.5 1 1 1.9e-07 6.6e-06 17.1 0.5 3 18 7 22 6 23 0.91 # 5324 # 5419 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.260 1_2 - 209 Ribosomal_L4 PF00573.17 192 0.00033 11.5 1.4 1 2 1.8e-05 0.00063 10.6 0.2 127 182 8 66 2 69 0.80 # 1722 # 2348 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_2 - 209 Ribosomal_L4 PF00573.17 192 0.00033 11.5 1.4 2 2 0.038 1.3 -0.3 0.1 62 76 132 148 96 199 0.70 # 1722 # 2348 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 5_1 - 231 HTH_32 PF13565.1 77 1.6e-06 20.4 0.1 1 2 1.7e-06 3e-05 16.3 0.1 48 76 31 56 13 57 0.85 # 44 # 736 # -1 # ID=5_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.330 5_1 - 231 HTH_32 PF13565.1 77 1.6e-06 20.4 0.1 2 2 0.06 1.1 1.7 0.0 33 73 146 189 118 191 0.76 # 44 # 736 # -1 # ID=5_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.330 1_7 - 193 HTH_32 PF13565.1 77 5.9e-06 18.5 0.3 1 1 6.8e-07 1.2e-05 17.5 0.3 19 77 131 181 118 181 0.80 # 8271 # 8849 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/6ab8a9cc-8555-47ef-a98b-b82b902d882b # Target file: checkm_output/bins/pGCA_001045795.2.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001045795.2.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/6ab8a9cc-8555-47ef-a98b-b82b902d882b checkm_output/bins/pGCA_001045795.2.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Staphylococcus/training_20210111 # Date: Mon Jan 11 14:53:02 2021 # [ok]