# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_23 - 131 Methyltransf_10 PF05971.7 299 0.00026 12.6 0.2 1 2 0.016 1.1 0.6 0.0 16 39 18 43 2 75 0.69 # 24321 # 24713 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.242 1_23 - 131 Methyltransf_10 PF05971.7 299 0.00026 12.6 0.2 2 2 1.7e-05 0.0012 10.4 0.0 135 175 83 123 69 128 0.89 # 24321 # 24713 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.242 1_68 - 620 AAA_2 PF07724.9 171 1.8e-36 118.1 0.2 1 2 0.0014 0.1 5.0 0.1 5 77 46 119 44 132 0.77 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_68 - 620 AAA_2 PF07724.9 171 1.8e-36 118.1 0.2 2 2 6.4e-36 4.6e-34 110.2 0.0 5 169 303 452 300 454 0.90 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_68 - 620 Torsin PF06309.6 127 2e-08 26.6 0.0 1 2 1.4e-08 1e-06 21.2 0.0 9 80 256 328 249 359 0.87 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_68 - 620 Torsin PF06309.6 127 2e-08 26.6 0.0 2 2 0.0096 0.69 2.3 0.0 68 110 497 539 488 549 0.89 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_64 - 99 TIGR01744 TIGR01744 191 0.00034 12.4 0.1 1 2 0.04 2.8 -0.4 0.0 85 123 10 43 4 45 0.55 # 48065 # 48361 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.306 1_64 - 99 TIGR01744 TIGR01744 191 0.00034 12.4 0.1 2 2 8.6e-06 0.00062 11.6 0.0 76 121 40 89 28 92 0.76 # 48065 # 48361 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.306 1_68 - 620 AAA_18 PF13238.1 129 3.3e-06 19.9 2.8 1 2 0.0021 0.076 5.8 0.1 1 71 47 109 47 132 0.77 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_68 - 620 AAA_18 PF13238.1 129 3.3e-06 19.9 2.8 2 2 1.9e-05 0.0007 12.4 0.0 3 36 306 347 305 425 0.71 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_55 - 283 AAA_18 PF13238.1 129 0.0004 13.2 7.2 1 1 1.8e-05 0.00064 12.5 4.5 8 97 19 158 18 189 0.73 # 40222 # 41070 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.297 1_26 - 191 MarR_2 PF12802.2 62 9.9e-05 14.5 0.0 1 1 3.2e-06 0.00023 13.3 0.0 13 43 157 185 151 186 0.92 # 26226 # 26798 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.307 1_55 - 283 YhjQ PF06564.7 244 5.4e-05 15.0 0.0 1 1 1.9e-06 0.00014 13.7 0.0 9 145 16 159 9 175 0.68 # 40222 # 41070 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.297 1_68 - 620 AAA_24 PF13479.1 213 6.7e-06 18.2 0.8 1 3 9e-05 0.0064 8.5 0.0 5 79 46 121 45 144 0.86 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_68 - 620 AAA_24 PF13479.1 213 6.7e-06 18.2 0.8 2 3 0.0008 0.058 5.4 0.0 6 28 304 326 299 344 0.84 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_68 - 620 AAA_24 PF13479.1 213 6.7e-06 18.2 0.8 3 3 0.023 1.7 0.6 0.3 57 101 462 516 424 613 0.64 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_26 - 191 HTH_17 PF12728.2 51 0.00047 12.9 1.0 1 1 1.6e-05 0.0012 11.6 0.1 2 25 164 187 164 188 0.94 # 26226 # 26798 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.307 1_68 - 620 AAA_22 PF13401.1 131 5.1e-11 35.3 0.0 1 2 4.5e-08 3.2e-06 19.8 0.1 7 114 47 140 45 158 0.74 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_68 - 620 AAA_22 PF13401.1 131 5.1e-11 35.3 0.0 2 2 0.00035 0.025 7.2 0.0 7 28 304 325 299 395 0.68 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_58 - 89 HTH_19 PF12844.2 64 1.1e-11 37.2 0.0 1 1 4.2e-13 1.5e-11 36.7 0.0 4 58 17 73 16 79 0.87 # 42218 # 42484 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.258 1_26 - 191 HTH_19 PF12844.2 64 0.00012 14.6 0.1 1 1 1e-05 0.00037 13.0 0.1 5 37 156 188 153 190 0.88 # 26226 # 26798 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.307 1_16 - 220 DUF3816 PF12822.2 172 0.02 7.2 31.4 1 2 2.5e-06 0.00018 13.9 11.6 37 167 10 142 5 144 0.63 # 21748 # 22407 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.289 1_16 - 220 DUF3816 PF12822.2 172 0.02 7.2 31.4 2 2 0.067 4.9 -0.6 11.9 52 162 154 213 150 219 0.45 # 21748 # 22407 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.289 1_26 - 191 Mga PF05043.8 87 0.00019 14.2 0.4 1 1 1.1e-05 0.00078 12.2 0.1 22 55 155 188 149 190 0.92 # 26226 # 26798 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.307 1_5 - 1804 RNA_pol_Rpb2_6 PF00562.23 386 5.5e-20 63.8 5.6 1 2 3.3e-06 0.00024 12.3 0.1 81 106 748 773 730 778 0.86 # 8178 # 13589 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.331 1_5 - 1804 RNA_pol_Rpb2_6 PF00562.23 386 5.5e-20 63.8 5.6 2 2 2.9e-18 2.1e-16 52.0 0.0 236 292 790 845 786 951 0.85 # 8178 # 13589 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.331 1_23 - 131 UPF0223 PF05256.7 88 0.00025 13.6 3.2 1 2 0.00065 0.047 6.3 0.1 25 52 36 63 34 71 0.89 # 24321 # 24713 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.242 1_23 - 131 UPF0223 PF05256.7 88 0.00025 13.6 3.2 2 2 0.00018 0.013 8.1 0.5 37 67 91 123 65 127 0.73 # 24321 # 24713 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.242 1_55 - 283 Mor PF08765.6 108 5.1e-05 15.5 0.1 1 1 1.6e-06 0.00011 14.4 0.1 49 95 229 278 227 280 0.91 # 40222 # 41070 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.297 1_68 - 620 AAA_23 PF13476.1 202 0.00052 12.8 7.0 1 2 0.046 3.3 0.4 0.1 92 143 69 121 9 251 0.66 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_68 - 620 AAA_23 PF13476.1 202 0.00052 12.8 7.0 2 2 6.8e-06 0.00049 12.9 3.1 24 168 306 484 298 617 0.58 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_68 - 620 Mg_chelatase PF01078.16 207 1.4e-05 16.8 0.1 1 5 0.026 1.9 0.0 0.0 24 42 46 64 44 82 0.82 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_68 - 620 Mg_chelatase PF01078.16 207 1.4e-05 16.8 0.1 2 5 0.046 3.3 -0.8 0.0 31 57 83 109 74 118 0.82 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_68 - 620 Mg_chelatase PF01078.16 207 1.4e-05 16.8 0.1 3 5 0.0015 0.11 4.0 0.0 109 151 113 159 109 166 0.83 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_68 - 620 Mg_chelatase PF01078.16 207 1.4e-05 16.8 0.1 4 5 0.00063 0.045 5.3 0.0 25 43 304 322 273 362 0.78 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_68 - 620 Mg_chelatase PF01078.16 207 1.4e-05 16.8 0.1 5 5 0.027 1.9 -0.0 0.0 108 157 363 410 351 431 0.73 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_58 - 89 HTH_31 PF13560.1 64 8.7e-08 24.8 0.0 1 1 1.6e-09 1.2e-07 24.4 0.0 13 57 25 69 15 82 0.86 # 42218 # 42484 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.258 1_2 - 1287 T4SS-DNA_transf PF02534.9 469 2.1e-17 55.2 12.4 1 3 3.3e-10 2.4e-08 25.3 0.1 44 186 275 430 218 457 0.71 # 1168 # 5028 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.323 1_2 - 1287 T4SS-DNA_transf PF02534.9 469 2.1e-17 55.2 12.4 2 3 0.082 5.9 -2.3 0.0 213 250 543 579 518 580 0.81 # 1168 # 5028 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.323 1_2 - 1287 T4SS-DNA_transf PF02534.9 469 2.1e-17 55.2 12.4 3 3 5.8e-14 4.2e-12 37.7 0.4 305 433 813 951 779 955 0.78 # 1168 # 5028 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.323 1_58 - 89 HTH_37 PF13744.1 80 1.5e-07 23.6 0.0 1 1 4.1e-09 2.9e-07 22.7 0.0 27 67 22 62 19 65 0.93 # 42218 # 42484 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.258 1_49 - 146 SSB PF00436.20 104 2.1e-10 32.9 2.1 1 1 4.4e-12 3.2e-10 32.3 2.1 1 104 3 100 3 100 0.85 # 37662 # 38099 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 1_61 - 365 HTH_36 PF13730.1 55 1e-05 18.1 0.6 1 1 2.5e-06 8.9e-05 15.1 0.2 14 55 105 147 101 147 0.87 # 45638 # 46732 # -1 # ID=1_61;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.307 1_59 - 356 HTH_36 PF13730.1 55 1.1e-05 18.1 1.3 1 1 1.1e-06 4.1e-05 16.2 0.6 2 55 31 95 30 95 0.86 # 42836 # 43903 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.293 1_55 - 283 AAA_31 PF13614.1 157 9.5e-05 14.8 1.0 1 1 1e-05 0.00072 12.0 1.0 9 148 17 161 10 169 0.69 # 40222 # 41070 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.297 1_68 - 620 AAA_17 PF13207.1 121 0.00013 15.3 1.5 1 2 0.094 3.4 1.0 0.0 2 34 47 82 46 137 0.58 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_68 - 620 AAA_17 PF13207.1 121 0.00013 15.3 1.5 2 2 4.6e-05 0.0016 11.7 0.2 6 33 308 340 304 510 0.78 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_55 - 283 AAA_17 PF13207.1 121 0.00036 13.8 1.1 1 1 3.2e-05 0.0011 12.2 1.1 9 77 19 88 18 184 0.64 # 40222 # 41070 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.297 1_68 - 620 TIGR02397 TIGR02397 355 5e-07 21.3 0.6 1 2 0.00033 0.024 5.9 0.0 102 223 94 230 82 253 0.73 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_68 - 620 TIGR02397 TIGR02397 355 5e-07 21.3 0.6 2 2 2.7e-06 0.00019 12.8 0.0 16 57 274 322 268 327 0.67 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_68 - 620 Sigma54_activat PF00158.21 168 5.1e-05 15.2 0.1 1 3 0.0044 0.32 2.9 0.0 96 131 113 152 28 163 0.78 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_68 - 620 Sigma54_activat PF00158.21 168 5.1e-05 15.2 0.1 2 3 0.0015 0.11 4.4 0.0 25 42 304 321 284 334 0.88 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_68 - 620 Sigma54_activat PF00158.21 168 5.1e-05 15.2 0.1 3 3 0.0087 0.62 1.9 0.0 95 157 363 425 356 434 0.81 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_27 - 237 ALMT PF11744.3 406 0.093 3.7 11.6 1 1 0.002 0.14 3.1 11.6 275 389 103 218 70 235 0.48 # 26837 # 27547 # 1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.267 1_48 - 82 SymE_toxin PF08845.5 57 0.00011 14.5 0.0 1 1 2e-06 0.00014 14.2 0.0 25 53 15 43 3 47 0.85 # 37349 # 37594 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.268 1_68 - 620 ResIII PF04851.10 184 2.7e-09 29.5 2.8 1 3 0.0028 0.2 3.9 0.0 25 42 44 61 22 77 0.77 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_68 - 620 ResIII PF04851.10 184 2.7e-09 29.5 2.8 2 3 4.8e-06 0.00034 12.9 0.0 137 175 92 139 63 153 0.66 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_68 - 620 ResIII PF04851.10 184 2.7e-09 29.5 2.8 3 3 5.2e-05 0.0038 9.5 0.0 8 44 277 320 271 361 0.87 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_26 - 191 HTH_29 PF13551.1 112 0.0012 11.5 1.5 1 2 0.015 1.1 1.9 0.2 37 64 128 153 121 161 0.74 # 26226 # 26798 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.307 1_26 - 191 HTH_29 PF13551.1 112 0.0012 11.5 1.5 2 2 0.00016 0.012 8.3 0.0 9 35 160 186 157 189 0.85 # 26226 # 26798 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.307 1_61 - 365 HTH_5 PF01022.15 47 0.00016 13.8 0.0 1 1 4.5e-06 0.00033 12.8 0.0 24 46 126 148 123 149 0.92 # 45638 # 46732 # -1 # ID=1_61;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.307 1_61 - 365 HTH_24 PF13412.1 48 9.1e-07 20.7 0.1 1 1 3.6e-08 2.6e-06 19.3 0.1 15 48 115 148 94 148 0.80 # 45638 # 46732 # -1 # ID=1_61;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.307 1_44 - 130 DNA_pol3_gamma3 PF12169.3 143 0.00025 13.2 0.0 1 1 5.7e-06 0.00041 12.6 0.0 22 51 65 94 61 97 0.90 # 35390 # 35779 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 1_68 - 620 TIGR00390 TIGR00390 441 2.5e-07 22.0 0.0 1 3 0.00047 0.034 5.1 0.0 48 75 45 72 31 82 0.84 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_68 - 620 TIGR00390 TIGR00390 441 2.5e-07 22.0 0.0 2 3 0.0094 0.68 0.8 0.0 240 287 102 150 80 162 0.77 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_68 - 620 TIGR00390 TIGR00390 441 2.5e-07 22.0 0.0 3 3 7e-06 0.00051 11.1 0.0 42 67 296 321 291 325 0.85 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_68 - 620 IstB_IS21 PF01695.12 178 3.2e-08 25.6 0.1 1 3 7.6e-05 0.0054 8.6 0.0 44 64 44 61 2 168 0.79 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_68 - 620 IstB_IS21 PF01695.12 178 3.2e-08 25.6 0.1 2 3 0.047 3.4 -0.5 0.0 100 141 151 192 143 200 0.87 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_68 - 620 IstB_IS21 PF01695.12 178 3.2e-08 25.6 0.1 3 3 3.8e-06 0.00027 12.8 0.0 48 69 302 323 291 330 0.88 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_26 - 191 HTH_IclR PF09339.5 52 0.00051 12.1 0.0 1 1 1.7e-05 0.0012 10.9 0.0 16 39 161 184 156 186 0.91 # 26226 # 26798 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.307 1_48 - 82 Antitoxin-MazE PF04014.13 47 1.9e-07 23.2 0.1 1 1 4.7e-09 3.4e-07 22.4 0.1 2 37 9 43 8 51 0.92 # 37349 # 37594 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.268 1_26 - 191 HTH_7 PF02796.10 45 3e-07 22.7 0.1 1 1 1.4e-08 9.9e-07 21.1 0.1 1 42 143 184 143 187 0.85 # 26226 # 26798 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.307 1_12 - 114 TerC PF03741.11 184 0.00055 11.8 0.8 1 1 1.3e-05 0.00094 11.1 0.8 54 86 8 54 2 104 0.68 # 19691 # 20032 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.298 1_16 - 220 Peptidase_M50 PF02163.17 192 0.024 6.0 6.2 1 1 0.0012 0.086 4.2 6.2 85 118 7 61 2 219 0.76 # 21748 # 22407 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.289 1_55 - 283 ATP_bind_1 PF03029.12 238 0.0045 8.9 4.3 1 2 0.00014 0.01 7.8 1.4 6 68 19 81 17 158 0.59 # 40222 # 41070 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.297 1_55 - 283 ATP_bind_1 PF03029.12 238 0.0045 8.9 4.3 2 2 0.041 2.9 -0.3 0.1 175 207 242 278 197 282 0.58 # 40222 # 41070 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.297 1_68 - 620 AAA PF00004.24 132 3.8e-18 58.4 1.1 1 2 2.1e-11 1.5e-09 30.6 0.1 1 111 47 151 47 171 0.77 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_68 - 620 AAA PF00004.24 132 3.8e-18 58.4 1.1 2 2 1.4e-09 1e-07 24.7 0.0 3 120 306 421 304 433 0.77 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_4 - 705 AAA_10 PF12846.2 304 5e-08 25.1 0.5 1 1 1.4e-09 5e-08 25.1 0.5 53 214 392 586 364 619 0.80 # 5921 # 8035 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.315 1_55 - 283 AAA_10 PF12846.2 304 0.00015 13.7 0.2 1 2 3.3e-05 0.0012 10.7 0.0 11 48 19 62 17 97 0.77 # 40222 # 41070 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.297 1_55 - 283 AAA_10 PF12846.2 304 0.00015 13.7 0.2 2 2 0.027 0.97 1.2 0.1 32 95 156 226 113 279 0.53 # 40222 # 41070 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.297 1_68 - 620 DEAD PF00270.24 169 4.2e-05 15.5 0.0 1 3 0.0017 0.12 4.3 0.0 12 32 44 62 25 70 0.77 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_68 - 620 DEAD PF00270.24 169 4.2e-05 15.5 0.0 2 3 0.0026 0.19 3.7 0.0 116 159 105 149 89 158 0.62 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_68 - 620 DEAD PF00270.24 169 4.2e-05 15.5 0.0 3 3 0.0044 0.31 2.9 0.0 17 31 304 318 277 323 0.84 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_5 - 1804 RNA_pol_Rpb1_2 PF00623.15 166 6.3e-16 51.2 0.6 1 1 2.4e-16 1.7e-14 46.5 0.0 86 162 1185 1265 1139 1269 0.74 # 8178 # 13589 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.331 1_68 - 620 AAA_16 PF13191.1 185 1.3e-10 33.9 0.0 1 3 6.8e-06 0.00049 12.5 0.0 5 51 28 70 25 83 0.78 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_68 - 620 AAA_16 PF13191.1 185 1.3e-10 33.9 0.0 2 3 0.00035 0.025 7.0 0.0 131 175 87 136 79 146 0.69 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_68 - 620 AAA_16 PF13191.1 185 1.3e-10 33.9 0.0 3 3 3.6e-05 0.0026 10.2 0.0 2 43 274 320 273 347 0.82 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_12 - 114 Peptidase_S49_N PF08496.5 155 0.0007 11.8 10.0 1 1 1.2e-05 0.0009 11.5 10.0 11 91 6 86 3 107 0.58 # 19691 # 20032 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.298 1_26 - 191 HTH_23 PF13384.1 50 2.6e-06 19.5 0.0 1 1 9.1e-08 6.5e-06 18.2 0.0 7 40 152 186 148 189 0.90 # 26226 # 26798 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.307 1_26 - 191 HTH_6 PF01418.12 77 0.00012 14.3 0.0 1 1 4.4e-06 0.00032 12.9 0.0 33 56 162 185 158 186 0.91 # 26226 # 26798 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.307 1_69 - 1335 TIGR02168 TIGR02168 1181 4.4e-06 16.7 86.9 1 3 6.9e-07 5e-05 13.2 23.1 683 939 614 867 584 879 0.62 # 53941 # 57945 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.359 1_69 - 1335 TIGR02168 TIGR02168 1181 4.4e-06 16.7 86.9 2 3 1.9e-05 0.0013 8.5 38.9 669 984 886 1200 875 1202 0.73 # 53941 # 57945 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.359 1_69 - 1335 TIGR02168 TIGR02168 1181 4.4e-06 16.7 86.9 3 3 4.9e-05 0.0035 7.1 8.5 685 804 1206 1326 1201 1334 0.56 # 53941 # 57945 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.359 1_8 - 631 TIGR01051 TIGR01051 632 1.7e-17 55.7 10.5 1 1 5.9e-19 4.2e-17 54.4 10.5 14 554 42 605 38 627 0.73 # 15119 # 17011 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.315 1_61 - 365 HTH_11 PF08279.7 55 5.4e-06 18.5 0.1 1 1 4.3e-07 1.6e-05 17.0 0.1 15 44 117 146 115 152 0.89 # 45638 # 46732 # -1 # ID=1_61;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.307 1_26 - 191 HTH_11 PF08279.7 55 0.00015 13.9 0.1 1 1 1.9e-05 0.00067 11.8 0.1 6 37 155 185 151 186 0.87 # 26226 # 26798 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.307 1_55 - 283 MipZ PF09140.6 261 7.3e-09 27.5 1.2 1 2 9.1e-07 6.5e-05 14.5 0.1 2 42 10 51 9 69 0.80 # 40222 # 41070 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.297 1_55 - 283 MipZ PF09140.6 261 7.3e-09 27.5 1.2 2 2 6.1e-06 0.00044 11.8 0.1 57 131 90 164 77 184 0.77 # 40222 # 41070 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.297 1_2 - 1287 TrwB_AAD_bind PF10412.4 386 1.4e-09 29.4 0.3 1 2 0.013 0.92 0.4 0.0 44 127 313 410 287 461 0.68 # 1168 # 5028 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.323 1_2 - 1287 TrwB_AAD_bind PF10412.4 386 1.4e-09 29.4 0.3 2 2 2.4e-10 1.8e-08 25.8 0.1 248 371 816 948 780 955 0.85 # 1168 # 5028 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.323 1_26 - 191 HTH_28 PF13518.1 52 0.00038 13.0 0.0 1 1 1.2e-05 0.00084 11.8 0.0 8 35 158 186 151 189 0.84 # 26226 # 26798 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.307 1_55 - 283 VirC1 PF07015.6 231 9.2e-06 17.3 0.1 1 2 0.0005 0.036 5.5 0.0 3 40 10 48 9 66 0.87 # 40222 # 41070 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.297 1_55 - 283 VirC1 PF07015.6 231 9.2e-06 17.3 0.1 2 2 2.7e-05 0.002 9.7 0.0 80 112 128 160 95 177 0.83 # 40222 # 41070 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.297 1_55 - 283 Fer4_NifH PF00142.13 273 7.3e-05 14.4 0.0 1 1 1.9e-06 0.00014 13.6 0.0 8 37 17 47 11 98 0.80 # 40222 # 41070 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.297 1_55 - 283 PCMT PF01135.14 210 2.1e-05 16.6 0.0 1 1 5.2e-07 3.7e-05 15.7 0.0 61 129 25 96 7 103 0.81 # 40222 # 41070 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.297 1_61 - 365 RPA_C PF08784.6 102 0.00047 13.0 1.5 1 1 1.8e-05 0.0013 11.6 0.1 27 95 76 147 58 148 0.72 # 45638 # 46732 # -1 # ID=1_61;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.307 1_54 - 82 Ribosomal_S10 PF00338.17 97 0.00026 13.3 0.3 1 1 4.4e-06 0.00032 13.0 0.3 21 71 17 67 8 76 0.91 # 39977 # 40222 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.297 1_64 - 99 Transposase_1 PF01359.13 81 0.00054 12.2 0.7 1 1 1e-05 0.00075 11.8 0.1 41 76 38 73 35 78 0.89 # 48065 # 48361 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.306 1_55 - 283 DUF87 PF01935.12 229 0.00086 11.6 3.2 1 1 0.0001 0.0073 8.5 3.1 33 76 19 79 17 272 0.82 # 40222 # 41070 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.297 1_23 - 131 PNPase PF03726.9 83 8.3e-05 15.3 1.1 1 2 0.0023 0.16 4.8 0.0 25 61 9 42 7 56 0.88 # 24321 # 24713 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.242 1_23 - 131 PNPase PF03726.9 83 8.3e-05 15.3 1.1 2 2 7.7e-05 0.0055 9.5 0.2 50 74 106 130 88 130 0.86 # 24321 # 24713 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.242 1_26 - 191 TetR_N PF00440.18 47 1.8e-05 16.8 0.1 1 2 0.026 1.9 0.7 0.0 13 21 9 17 6 17 0.91 # 26226 # 26798 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.307 1_26 - 191 TetR_N PF00440.18 47 1.8e-05 16.8 0.1 2 2 2.5e-06 0.00018 13.6 0.0 16 38 163 185 159 189 0.87 # 26226 # 26798 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.307 1_58 - 89 HTH_25 PF13413.1 62 0.00012 14.2 0.0 1 1 2.1e-06 0.00015 13.9 0.0 10 39 26 55 21 84 0.90 # 42218 # 42484 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.258 1_26 - 191 HTH_38 PF13936.1 44 7.4e-08 24.4 0.0 1 1 2.6e-09 1.9e-07 23.1 0.0 18 44 161 187 151 187 0.88 # 26226 # 26798 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.307 1_27 - 237 DUF2201_N PF13203.1 292 0.00028 12.5 8.1 1 1 4.8e-06 0.00035 12.2 8.1 140 231 119 209 59 223 0.76 # 26837 # 27547 # 1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.267 1_58 - 89 HTH_3 PF01381.17 55 2.6e-12 38.9 0.0 1 1 1.2e-13 4.2e-12 38.3 0.0 8 53 25 71 17 73 0.89 # 42218 # 42484 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.258 1_26 - 191 HTH_3 PF01381.17 55 0.00039 12.8 0.0 1 1 2.3e-05 0.00084 11.7 0.0 6 32 160 186 155 190 0.89 # 26226 # 26798 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.307 1_26 - 191 TrmB PF01978.14 68 2e-05 16.7 0.1 1 1 6.6e-07 4.7e-05 15.5 0.1 19 45 160 186 155 186 0.90 # 26226 # 26798 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.307 1_55 - 283 CbiA PF01656.18 195 2.8e-19 61.7 0.0 1 1 4.9e-21 3.5e-19 61.4 0.0 1 128 11 165 11 241 0.74 # 40222 # 41070 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.297 1_68 - 620 KAP_NTPase PF07693.9 325 5.7e-05 14.6 0.6 1 2 2.2e-06 0.00016 13.1 0.0 23 134 47 155 29 229 0.73 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_68 - 620 KAP_NTPase PF07693.9 325 5.7e-05 14.6 0.6 2 2 0.05 3.6 -1.2 0.4 209 267 488 547 463 608 0.71 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_58 - 89 HTH_26 PF13443.1 63 4e-06 19.5 0.1 1 1 9.5e-08 6.9e-06 18.7 0.0 10 57 26 73 15 84 0.87 # 42218 # 42484 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.258 1_70 - 110 DUF2232 PF09991.4 290 0.00027 12.4 2.3 1 1 5.1e-06 0.00037 12.0 2.3 53 111 37 95 31 103 0.92 # 58062 # 58391 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.388 1_68 - 620 TIGR00678 TIGR00678 188 0.00029 12.6 0.0 1 2 0.014 1 1.0 0.0 146 171 167 192 151 202 0.84 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_68 - 620 TIGR00678 TIGR00678 188 0.00029 12.6 0.0 2 2 7e-05 0.005 8.6 0.0 9 41 296 328 289 351 0.83 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_27 - 237 HSP70 PF00012.15 602 0.051 3.8 22.3 1 1 0.001 0.072 3.3 22.3 490 599 121 230 100 233 0.51 # 26837 # 27547 # 1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.267 1_22 - 84 zf-DHHC PF01529.15 174 0.087 4.6 8.8 1 1 0.0022 0.16 3.8 8.8 101 158 19 77 14 81 0.67 # 24046 # 24297 # 1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.214 1_26 - 191 Trp_repressor PF01371.14 88 0.001 11.5 2.2 1 2 0.0077 0.55 2.7 0.1 17 34 104 121 91 129 0.74 # 26226 # 26798 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.307 1_26 - 191 Trp_repressor PF01371.14 88 0.001 11.5 2.2 2 2 0.00029 0.021 7.3 0.1 47 69 161 183 155 189 0.87 # 26226 # 26798 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.307 1_68 - 620 RuvB_N PF05496.7 234 1.7e-07 23.0 0.0 1 2 1.1e-05 0.00082 10.9 0.0 38 114 32 123 21 168 0.75 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_68 - 620 RuvB_N PF05496.7 234 1.7e-07 23.0 0.0 2 2 3.4e-05 0.0024 9.3 0.0 10 72 262 323 254 330 0.83 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_59 - 356 RepA_N PF06970.6 76 7.3e-38 120.8 3.2 1 1 3e-39 2.2e-37 119.2 3.2 1 76 14 89 14 89 0.99 # 42836 # 43903 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.293 1_68 - 620 AAA_5 PF07728.9 139 1.4e-13 43.2 0.0 1 2 5.4e-05 0.0039 9.4 0.0 1 32 46 77 46 85 0.89 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_68 - 620 AAA_5 PF07728.9 139 1.4e-13 43.2 0.0 2 2 3.4e-11 2.4e-09 29.5 0.0 3 125 305 413 303 423 0.84 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_2 - 1287 TraG-D_C PF12696.2 128 3.5e-22 71.1 0.3 1 1 4.8e-24 3.5e-22 71.1 0.3 4 126 815 942 812 944 0.84 # 1168 # 5028 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.323 1_27 - 237 DUF948 PF06103.6 90 0.0041 9.5 16.1 1 3 0.00018 0.013 7.9 9.2 4 77 88 174 87 187 0.59 # 26837 # 27547 # 1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.267 1_27 - 237 DUF948 PF06103.6 90 0.0041 9.5 16.1 2 3 0.013 0.93 1.9 0.8 29 51 158 180 150 201 0.66 # 26837 # 27547 # 1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.267 1_27 - 237 DUF948 PF06103.6 90 0.0041 9.5 16.1 3 3 0.0058 0.42 3.0 1.1 33 59 208 234 179 236 0.58 # 26837 # 27547 # 1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.267 1_26 - 191 HTH_32 PF13565.1 77 2.8e-05 17.3 0.4 1 2 0.091 6.6 0.1 0.0 50 50 74 74 21 95 0.53 # 26226 # 26798 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.307 1_26 - 191 HTH_32 PF13565.1 77 2.8e-05 17.3 0.4 2 2 2.3e-06 0.00017 14.9 0.1 16 76 131 183 122 184 0.71 # 26226 # 26798 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.307 1_68 - 620 RNA_helicase PF00910.17 107 0.00043 12.9 0.0 1 2 0.0081 0.59 2.8 0.0 1 29 47 74 47 118 0.67 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_68 - 620 RNA_helicase PF00910.17 107 0.00043 12.9 0.0 2 2 0.00047 0.034 6.8 0.0 2 22 305 325 304 350 0.85 # 51995 # 53854 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/356e52a9-1ad8-4c8f-a1f8-55d373783e39 # Target file: checkm_output/bins/pGCA_001028645.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001028645.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/356e52a9-1ad8-4c8f-a1f8-55d373783e39 checkm_output/bins/pGCA_001028645.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Staphylococcus/training_20210111 # Date: Mon Jan 11 14:53:04 2021 # [ok]